PDB Short entry for 5BQD HEADER TRANSCRIPTION 28-MAY-15 5BQD TITLE CRYSTAL STRUCTURE OF TBX5 (1-239) DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-BOX TRANSCRIPTION FACTOR TBX5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: T-BOX PROTEIN 5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIPL KEYWDS CARDIAC, TRANSCRIPTION FACTOR, CHD, NKX, TBX, DNA BINDING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.PRADHAN,S.GOPAL,A.PATEL,H.KASAHARA,H.J.NAM REVDAT 4 06-MAR-24 5BQD 1 LINK REVDAT 3 20-SEP-17 5BQD 1 JRNL REMARK REVDAT 2 06-APR-16 5BQD 1 JRNL REVDAT 1 16-MAR-16 5BQD 0 JRNL AUTH L.PRADHAN,S.GOPAL,S.LI,S.ASHUR,S.SURYANARAYANAN,H.KASAHARA, JRNL AUTH 2 H.J.NAM JRNL TITL INTERMOLECULAR INTERACTIONS OF CARDIAC TRANSCRIPTION FACTORS JRNL TITL 2 NKX2.5 AND TBX5. JRNL REF BIOCHEMISTRY V. 55 1702 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26926761 JRNL DOI 10.1021/ACS.BIOCHEM.6B00171 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0422 - 6.2223 0.99 1621 160 0.2542 0.2587 REMARK 3 2 6.2223 - 4.9403 1.00 1501 151 0.2327 0.2782 REMARK 3 3 4.9403 - 4.3162 0.99 1445 143 0.1897 0.2284 REMARK 3 4 4.3162 - 3.9218 0.99 1427 143 0.2170 0.2533 REMARK 3 5 3.9218 - 3.6408 0.96 1384 141 0.2622 0.3250 REMARK 3 6 3.6408 - 3.4262 0.98 1396 139 0.2759 0.3185 REMARK 3 7 3.4262 - 3.2546 0.99 1388 139 0.2658 0.3179 REMARK 3 8 3.2546 - 3.1130 0.99 1422 143 0.2681 0.3434 REMARK 3 9 3.1130 - 2.9932 1.00 1395 140 0.2635 0.3331 REMARK 3 10 2.9932 - 2.8899 1.00 1403 141 0.2686 0.3236 REMARK 3 11 2.8899 - 2.7995 1.00 1384 138 0.2629 0.2979 REMARK 3 12 2.7995 - 2.7195 1.00 1373 137 0.2880 0.3962 REMARK 3 13 2.7195 - 2.6479 0.99 1413 142 0.3221 0.4055 REMARK 3 14 2.6479 - 2.5833 0.95 1333 132 0.3335 0.3741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3113 REMARK 3 ANGLE : 1.259 4210 REMARK 3 CHIRALITY : 0.048 451 REMARK 3 PLANARITY : 0.006 534 REMARK 3 DIHEDRAL : 14.386 1152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 704K REMARK 200 DATA SCALING SOFTWARE : HKL-2000 704K REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.583 REMARK 200 RESOLUTION RANGE LOW (A) : 49.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX 1.9-1692 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE PH 6.4 10MM REMARK 280 MGSO4 1.8M AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.67400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 227.34800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.51100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 284.18500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.83700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.67400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 227.34800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 284.18500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 170.51100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.83700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 HIS A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 ASP A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 CYS A 24 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 GLU A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 233 REMARK 465 LYS A 234 REMARK 465 GLY A 235 REMARK 465 PHE A 236 REMARK 465 ARG A 237 REMARK 465 GLY A 238 REMARK 465 SER A 239 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 PHE B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 HIS B 12 REMARK 465 THR B 13 REMARK 465 PRO B 14 REMARK 465 LEU B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 17 REMARK 465 ASP B 18 REMARK 465 ALA B 19 REMARK 465 LYS B 20 REMARK 465 ASP B 21 REMARK 465 LEU B 22 REMARK 465 PRO B 23 REMARK 465 CYS B 24 REMARK 465 ASP B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 GLU B 29 REMARK 465 SER B 30 REMARK 465 ALA B 31 REMARK 465 LEU B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 465 PRO B 35 REMARK 465 SER B 36 REMARK 465 LYS B 37 REMARK 465 SER B 38 REMARK 465 PRO B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 PRO B 42 REMARK 465 GLN B 43 REMARK 465 ALA B 44 REMARK 465 ALA B 45 REMARK 465 ASP B 189 REMARK 465 GLU B 190 REMARK 465 ASN B 191 REMARK 465 ASN B 192 REMARK 465 GLY B 193 REMARK 465 PHE B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 LYS B 197 REMARK 465 PRO B 231 REMARK 465 PHE B 232 REMARK 465 ALA B 233 REMARK 465 LYS B 234 REMARK 465 GLY B 235 REMARK 465 PHE B 236 REMARK 465 ARG B 237 REMARK 465 GLY B 238 REMARK 465 SER B 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 180 O HOH A 301 1.87 REMARK 500 OE1 GLN A 156 O HOH A 302 1.94 REMARK 500 N VAL A 91 O HOH A 303 2.07 REMARK 500 CD GLN A 156 O HOH A 302 2.09 REMARK 500 CG GLN A 156 O HOH A 302 2.11 REMARK 500 O GLU B 208 O HOH B 401 2.12 REMARK 500 OH TYR B 87 O HOH B 402 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE2 PHE A 232 OE2 GLU B 228 8545 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 202 CB CYS A 202 SG 0.249 REMARK 500 CYS B 202 CB CYS B 202 SG 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 130 -148.76 -141.92 REMARK 500 ASN A 198 32.46 -94.41 REMARK 500 ASN A 230 108.75 -50.76 REMARK 500 PRO A 231 35.77 -70.48 REMARK 500 GLN B 49 -139.22 -75.41 REMARK 500 MET B 51 -1.15 -144.01 REMARK 500 ASP B 110 -162.04 -163.37 REMARK 500 PRO B 129 135.25 -2.40 REMARK 500 ALA B 130 55.80 -117.97 REMARK 500 MET B 131 -173.71 126.33 REMARK 500 GLN B 218 -52.07 -120.21 REMARK 500 LEU B 225 109.44 -31.86 REMARK 500 GLU B 228 33.11 -97.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 DBREF 5BQD A 1 239 UNP Q99593 TBX5_HUMAN 1 239 DBREF 5BQD B 1 239 UNP Q99593 TBX5_HUMAN 1 239 SEQRES 1 A 239 MET ALA ASP ALA ASP GLU GLY PHE GLY LEU ALA HIS THR SEQRES 2 A 239 PRO LEU GLU PRO ASP ALA LYS ASP LEU PRO CYS ASP SER SEQRES 3 A 239 LYS PRO GLU SER ALA LEU GLY ALA PRO SER LYS SER PRO SEQRES 4 A 239 SER SER PRO GLN ALA ALA PHE THR GLN GLN GLY MET GLU SEQRES 5 A 239 GLY ILE LYS VAL PHE LEU HIS GLU ARG GLU LEU TRP LEU SEQRES 6 A 239 LYS PHE HIS GLU VAL GLY THR GLU MET ILE ILE THR LYS SEQRES 7 A 239 ALA GLY ARG ARG MET PHE PRO SER TYR LYS VAL LYS VAL SEQRES 8 A 239 THR GLY LEU ASN PRO LYS THR LYS TYR ILE LEU LEU MET SEQRES 9 A 239 ASP ILE VAL PRO ALA ASP ASP HIS ARG TYR LYS PHE ALA SEQRES 10 A 239 ASP ASN LYS TRP SER VAL THR GLY LYS ALA GLU PRO ALA SEQRES 11 A 239 MET PRO GLY ARG LEU TYR VAL HIS PRO ASP SER PRO ALA SEQRES 12 A 239 THR GLY ALA HIS TRP MET ARG GLN LEU VAL SER PHE GLN SEQRES 13 A 239 LYS LEU LYS LEU THR ASN ASN HIS LEU ASP PRO PHE GLY SEQRES 14 A 239 HIS ILE ILE LEU ASN SER MET HIS LYS TYR GLN PRO ARG SEQRES 15 A 239 LEU HIS ILE VAL LYS ALA ASP GLU ASN ASN GLY PHE GLY SEQRES 16 A 239 SER LYS ASN THR ALA PHE CYS THR HIS VAL PHE PRO GLU SEQRES 17 A 239 THR ALA PHE ILE ALA VAL THR SER TYR GLN ASN HIS LYS SEQRES 18 A 239 ILE THR GLN LEU LYS ILE GLU ASN ASN PRO PHE ALA LYS SEQRES 19 A 239 GLY PHE ARG GLY SER SEQRES 1 B 239 MET ALA ASP ALA ASP GLU GLY PHE GLY LEU ALA HIS THR SEQRES 2 B 239 PRO LEU GLU PRO ASP ALA LYS ASP LEU PRO CYS ASP SER SEQRES 3 B 239 LYS PRO GLU SER ALA LEU GLY ALA PRO SER LYS SER PRO SEQRES 4 B 239 SER SER PRO GLN ALA ALA PHE THR GLN GLN GLY MET GLU SEQRES 5 B 239 GLY ILE LYS VAL PHE LEU HIS GLU ARG GLU LEU TRP LEU SEQRES 6 B 239 LYS PHE HIS GLU VAL GLY THR GLU MET ILE ILE THR LYS SEQRES 7 B 239 ALA GLY ARG ARG MET PHE PRO SER TYR LYS VAL LYS VAL SEQRES 8 B 239 THR GLY LEU ASN PRO LYS THR LYS TYR ILE LEU LEU MET SEQRES 9 B 239 ASP ILE VAL PRO ALA ASP ASP HIS ARG TYR LYS PHE ALA SEQRES 10 B 239 ASP ASN LYS TRP SER VAL THR GLY LYS ALA GLU PRO ALA SEQRES 11 B 239 MET PRO GLY ARG LEU TYR VAL HIS PRO ASP SER PRO ALA SEQRES 12 B 239 THR GLY ALA HIS TRP MET ARG GLN LEU VAL SER PHE GLN SEQRES 13 B 239 LYS LEU LYS LEU THR ASN ASN HIS LEU ASP PRO PHE GLY SEQRES 14 B 239 HIS ILE ILE LEU ASN SER MET HIS LYS TYR GLN PRO ARG SEQRES 15 B 239 LEU HIS ILE VAL LYS ALA ASP GLU ASN ASN GLY PHE GLY SEQRES 16 B 239 SER LYS ASN THR ALA PHE CYS THR HIS VAL PHE PRO GLU SEQRES 17 B 239 THR ALA PHE ILE ALA VAL THR SER TYR GLN ASN HIS LYS SEQRES 18 B 239 ILE THR GLN LEU LYS ILE GLU ASN ASN PRO PHE ALA LYS SEQRES 19 B 239 GLY PHE ARG GLY SER HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *11(H2 O) HELIX 1 AA1 GLU A 60 GLY A 71 1 12 HELIX 2 AA2 GLY A 145 GLN A 151 1 7 HELIX 3 AA3 PHE A 206 ALA A 210 5 5 HELIX 4 AA4 ASN A 219 GLU A 228 1 10 HELIX 5 AA5 GLU B 60 GLY B 71 1 12 HELIX 6 AA6 GLY B 145 GLN B 151 1 7 HELIX 7 AA7 PHE B 206 ALA B 210 5 5 HELIX 8 AA8 ASN B 219 GLN B 224 1 6 SHEET 1 AA1 9 TYR A 136 VAL A 137 0 SHEET 2 AA1 9 LYS A 99 PRO A 108 -1 N MET A 104 O TYR A 136 SHEET 3 AA1 9 LYS A 178 LYS A 187 -1 O GLN A 180 N VAL A 107 SHEET 4 AA1 9 ALA A 200 VAL A 205 -1 O ALA A 200 N LYS A 187 SHEET 5 AA1 9 GLN A 43 GLN A 48 -1 N ALA A 44 O VAL A 205 SHEET 6 AA1 9 ALA B 200 VAL B 205 -1 O PHE B 201 N THR A 47 SHEET 7 AA1 9 LYS B 178 LYS B 187 -1 N ILE B 185 O CYS B 202 SHEET 8 AA1 9 LYS B 99 PRO B 108 -1 N LEU B 103 O HIS B 184 SHEET 9 AA1 9 TYR B 136 VAL B 137 -1 O TYR B 136 N MET B 104 SHEET 1 AA2 3 TYR B 136 VAL B 137 0 SHEET 2 AA2 3 LYS B 99 PRO B 108 -1 N MET B 104 O TYR B 136 SHEET 3 AA2 3 ALA B 143 THR B 144 -1 O ALA B 143 N TYR B 100 SHEET 1 AA3 5 TYR B 136 VAL B 137 0 SHEET 2 AA3 5 LYS B 99 PRO B 108 -1 N MET B 104 O TYR B 136 SHEET 3 AA3 5 LYS B 178 LYS B 187 -1 O HIS B 184 N LEU B 103 SHEET 4 AA3 5 PHE B 211 VAL B 214 -1 O PHE B 211 N TYR B 179 SHEET 5 AA3 5 GLU B 73 ILE B 75 1 N MET B 74 O VAL B 214 SHEET 1 AA4 3 TYR A 136 VAL A 137 0 SHEET 2 AA4 3 LYS A 99 PRO A 108 -1 N MET A 104 O TYR A 136 SHEET 3 AA4 3 ALA A 143 THR A 144 -1 O ALA A 143 N TYR A 100 SHEET 1 AA5 6 TYR A 136 VAL A 137 0 SHEET 2 AA5 6 LYS A 99 PRO A 108 -1 N MET A 104 O TYR A 136 SHEET 3 AA5 6 ALA A 143 THR A 144 -1 O ALA A 143 N TYR A 100 SHEET 4 AA5 6 LYS A 178 LYS A 187 0 SHEET 5 AA5 6 PHE A 211 VAL A 214 -1 O PHE A 211 N TYR A 179 SHEET 6 AA5 6 GLU A 73 ILE A 75 1 N MET A 74 O VAL A 214 SHEET 1 AA6 3 LYS A 55 LEU A 58 0 SHEET 2 AA6 3 LYS A 88 THR A 92 -1 O THR A 92 N LYS A 55 SHEET 3 AA6 3 VAL A 153 SER A 154 -1 O VAL A 153 N VAL A 89 SHEET 1 AA7 3 ARG A 81 ARG A 82 0 SHEET 2 AA7 3 LYS A 159 THR A 161 -1 O LEU A 160 N ARG A 81 SHEET 3 AA7 3 ILE A 171 ILE A 172 1 O ILE A 171 N THR A 161 SHEET 1 AA8 2 ARG A 113 ALA A 117 0 SHEET 2 AA8 2 LYS A 120 GLY A 125 -1 O SER A 122 N LYS A 115 SHEET 1 AA9 3 LYS B 55 LEU B 58 0 SHEET 2 AA9 3 LYS B 88 THR B 92 -1 O THR B 92 N LYS B 55 SHEET 3 AA9 3 VAL B 153 SER B 154 -1 O VAL B 153 N VAL B 89 SHEET 1 AB1 3 ARG B 81 ARG B 82 0 SHEET 2 AB1 3 LYS B 159 THR B 161 -1 O LEU B 160 N ARG B 81 SHEET 3 AB1 3 ILE B 171 ILE B 172 1 O ILE B 171 N LYS B 159 SHEET 1 AB2 2 HIS B 112 ALA B 117 0 SHEET 2 AB2 2 LYS B 120 LYS B 126 -1 O THR B 124 N ARG B 113 LINK O HOH A 308 MG MG B 301 8445 1555 2.34 CISPEP 1 PHE A 84 PRO A 85 0 2.59 CISPEP 2 SER A 141 PRO A 142 0 -5.95 CISPEP 3 PHE B 84 PRO B 85 0 3.38 CISPEP 4 MET B 131 PRO B 132 0 -9.55 CISPEP 5 SER B 141 PRO B 142 0 -10.82 SITE 1 AC1 3 HOH A 308 ILE B 75 ARG B 81 SITE 1 AC2 1 ARG B 81 SITE 1 AC3 3 ASN A 119 THR B 77 ARG B 81 CRYST1 81.455 81.455 341.022 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012277 0.007088 0.000000 0.00000 SCALE2 0.000000 0.014176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002932 0.00000