PDB Short entry for 5C13 HEADER HYDROLASE 12-JUN-15 5C13 TITLE CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO HISTONE H3C4ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: PHD FINGER DOMAIN, UNP RESIDUES 853-915; COMPND 5 SYNONYM: 140 KDA TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR,TBP- COMPND 6 ASSOCIATED FACTOR 3,TRANSCRIPTION INITIATION FACTOR TFIID 140 KDA COMPND 7 SUBUNIT,TAFII140; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: H3 PEPTIDE; COMPND 11 CHAIN: P, D, F, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED H3 PEPTIDE 1-10 WITH K4CME3 SOURCE 16 MODIFICATION KEYWDS ZINC FINGER PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,J.HUANG REVDAT 3 15-NOV-23 5C13 1 ATOM REVDAT 2 27-SEP-17 5C13 1 REMARK REVDAT 1 25-NOV-15 5C13 0 JRNL AUTH J.HUANG,H.LI JRNL TITL CRYSTAL STRUCTURE OF JARID1A PHD FINGER BOUND TO HISTONE JRNL TITL 2 H3C4ME3 PEPTIDE JRNL REF NAT COMMUN 2015 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6238 - 3.5921 0.98 2868 170 0.2049 0.2586 REMARK 3 2 3.5921 - 2.8517 0.99 2869 156 0.2195 0.2830 REMARK 3 3 2.8517 - 2.4914 1.00 2829 157 0.2367 0.3021 REMARK 3 4 2.4914 - 2.2637 0.99 2830 157 0.2439 0.2813 REMARK 3 5 2.2637 - 2.1014 0.98 2845 120 0.2448 0.3321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2184 REMARK 3 ANGLE : 1.557 2984 REMARK 3 CHIRALITY : 0.070 280 REMARK 3 PLANARITY : 0.010 384 REMARK 3 DIHEDRAL : 16.894 796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03M MAGNESIUM CHLORIDE, 0.03M REMARK 280 CALCIUM CHLORIDE, 0.1M MES, 0.1M IMIDAZOLE, PH6.5, 15% PEGMME REMARK 280 550, 15% PEG 20K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.05250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 854 REMARK 465 SER A 855 REMARK 465 ALA A 915 REMARK 465 ASN A 916 REMARK 465 LYS A 917 REMARK 465 ALA P 7 REMARK 465 ARG P 8 REMARK 465 LYS P 9 REMARK 465 SER P 10 REMARK 465 GLY C 854 REMARK 465 SER C 855 REMARK 465 ALA C 915 REMARK 465 ASN C 916 REMARK 465 LYS C 917 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 GLY E 854 REMARK 465 SER E 855 REMARK 465 ALA E 915 REMARK 465 ASN E 916 REMARK 465 LYS E 917 REMARK 465 ALA F 7 REMARK 465 ARG F 8 REMARK 465 LYS F 9 REMARK 465 SER F 10 REMARK 465 GLY G 854 REMARK 465 SER G 855 REMARK 465 ALA G 915 REMARK 465 ASN G 916 REMARK 465 LYS G 917 REMARK 465 ALA H 7 REMARK 465 ARG H 8 REMARK 465 LYS H 9 REMARK 465 SER H 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN P 5 O HOH P 101 1.35 REMARK 500 HH TYR C 892 O HOH C 1102 1.46 REMARK 500 HG1 THR P 3 O HOH P 102 1.49 REMARK 500 H MET G 900 O HOH G 1103 1.51 REMARK 500 HH TYR E 892 O HOH E 1102 1.57 REMARK 500 HH TYR A 892 O HOH A 1104 1.60 REMARK 500 O GLY A 879 O HOH A 1101 1.86 REMARK 500 O THR G 901 O HOH G 1101 2.01 REMARK 500 O HOH A 1117 O HOH E 1114 2.01 REMARK 500 NE2 GLN P 5 O HOH P 101 2.05 REMARK 500 O HOH P 101 O HOH P 103 2.06 REMARK 500 O GLY G 879 O HOH G 1102 2.09 REMARK 500 O HOH G 1115 O HOH G 1116 2.11 REMARK 500 N MET E 856 O HOH E 1101 2.13 REMARK 500 O LYS C 875 O HOH C 1101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 878 -96.14 -88.08 REMARK 500 SER A 880 133.99 -37.67 REMARK 500 ASP A 887 -65.36 -102.40 REMARK 500 CYS A 911 141.77 72.16 REMARK 500 ASP C 877 91.72 -66.52 REMARK 500 ASP C 878 -82.25 -85.73 REMARK 500 SER C 880 143.41 -23.70 REMARK 500 ASP C 887 -70.95 -101.27 REMARK 500 CYS C 911 139.80 68.18 REMARK 500 ASP E 877 70.18 -67.54 REMARK 500 ASP E 878 -87.83 -82.33 REMARK 500 SER E 880 130.10 -26.82 REMARK 500 ASP E 887 -67.12 -103.98 REMARK 500 ASP E 889 19.55 58.62 REMARK 500 CYS E 911 140.53 70.30 REMARK 500 ASP G 878 -86.92 -67.40 REMARK 500 SER G 880 144.99 -37.56 REMARK 500 ASP G 887 -77.39 -100.70 REMARK 500 CYS G 911 138.87 69.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 878 GLY C 879 -148.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 870 SG REMARK 620 2 CYS A 873 SG 112.9 REMARK 620 3 HIS A 893 ND1 102.6 97.4 REMARK 620 4 CYS A 896 SG 115.4 115.9 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 885 SG REMARK 620 2 CYS A 888 SG 107.4 REMARK 620 3 CYS A 911 SG 107.9 118.8 REMARK 620 4 CYS A 914 SG 105.6 107.3 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 870 SG REMARK 620 2 CYS C 873 SG 113.9 REMARK 620 3 HIS C 893 ND1 102.0 96.7 REMARK 620 4 CYS C 896 SG 116.5 114.8 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 885 SG REMARK 620 2 CYS C 888 SG 110.7 REMARK 620 3 CYS C 911 SG 110.7 113.9 REMARK 620 4 CYS C 914 SG 104.4 107.5 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 870 SG REMARK 620 2 CYS E 873 SG 117.6 REMARK 620 3 HIS E 893 ND1 101.9 100.1 REMARK 620 4 CYS E 896 SG 113.4 111.8 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 885 SG REMARK 620 2 CYS E 888 SG 107.1 REMARK 620 3 CYS E 911 SG 109.6 117.0 REMARK 620 4 CYS E 914 SG 109.5 105.8 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 870 SG REMARK 620 2 CYS G 873 SG 112.5 REMARK 620 3 HIS G 893 ND1 100.5 99.0 REMARK 620 4 CYS G 896 SG 116.4 111.5 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 885 SG REMARK 620 2 CYS G 888 SG 107.7 REMARK 620 3 CYS G 911 SG 109.2 115.9 REMARK 620 4 CYS G 914 SG 106.9 109.2 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ D 4 through REMARK 800 GLN D 5 bound to THR D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ F 4 through REMARK 800 GLN F 5 bound to THR F 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ H 4 through REMARK 800 GLN H 5 bound to THR H 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ P 4 through REMARK 800 GLN P 5 bound to THR P 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C11 RELATED DB: PDB DBREF 5C13 A 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 P 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 C 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 D 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 E 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 F 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 G 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 H 1 10 PDB 5C13 5C13 1 10 SEQADV 5C13 GLY A 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER A 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET A 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY C 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER C 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET C 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY E 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER E 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET E 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY G 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER G 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET G 856 UNP Q5VWG9 EXPRESSION TAG SEQRES 1 A 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 A 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 A 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 A 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 A 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 P 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 C 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 C 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 C 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 C 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 C 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 D 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 E 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 E 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 E 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 E 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 E 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 F 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 G 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 G 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 G 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 G 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 G 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 H 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER HET 4WQ P 4 31 HET 4WQ D 4 31 HET 4WQ F 4 31 HET 4WQ H 4 31 HET ZN A1001 1 HET ZN A1002 1 HET ZN C1001 1 HET ZN C1002 1 HET ZN E1001 1 HET ZN E1002 1 HET ZN G1001 1 HET ZN G1002 1 HETNAM 4WQ (2S)-2-AMINO-7,7-DIMETHYLOCTANOIC ACID HETNAM ZN ZINC ION FORMUL 2 4WQ 4(C10 H21 N O2) FORMUL 9 ZN 8(ZN 2+) FORMUL 17 HOH *78(H2 O) HELIX 1 AA1 PRO A 895 GLY A 898 5 4 HELIX 2 AA2 PRO C 895 GLY C 898 5 4 HELIX 3 AA3 PRO E 895 GLY E 898 5 4 HELIX 4 AA4 PRO G 895 GLY G 898 5 4 SHEET 1 AA1 5 GLN A 866 TRP A 868 0 SHEET 2 AA1 5 VAL A 858 ARG A 860 -1 N ILE A 859 O ILE A 867 SHEET 3 AA1 5 THR F 3 GLN F 5 -1 O THR F 3 N ARG A 860 SHEET 4 AA1 5 MET E 882 GLY E 884 -1 N MET E 882 O 4WQ F 4 SHEET 5 AA1 5 TRP E 891 HIS E 893 -1 O TYR E 892 N ILE E 883 SHEET 1 AA2 3 TRP A 891 HIS A 893 0 SHEET 2 AA2 3 MET A 882 GLY A 884 -1 N ILE A 883 O TYR A 892 SHEET 3 AA2 3 THR P 3 4WQ P 4 -1 O 4WQ P 4 N MET A 882 SHEET 1 AA3 5 GLN C 866 ILE C 869 0 SHEET 2 AA3 5 TYR C 857 ARG C 860 -1 N ILE C 859 O ILE C 867 SHEET 3 AA3 5 THR H 3 GLN H 5 -1 O THR H 3 N ARG C 860 SHEET 4 AA3 5 MET G 882 GLY G 884 -1 N MET G 882 O 4WQ H 4 SHEET 5 AA3 5 TRP G 891 HIS G 893 -1 O TYR G 892 N ILE G 883 SHEET 1 AA4 3 TRP C 891 HIS C 893 0 SHEET 2 AA4 3 MET C 882 GLY C 884 -1 N ILE C 883 O TYR C 892 SHEET 3 AA4 3 THR D 3 4WQ D 4 -1 O 4WQ D 4 N MET C 882 SHEET 1 AA5 2 TYR E 857 ARG E 860 0 SHEET 2 AA5 2 GLN E 866 ILE E 869 -1 O ILE E 867 N ILE E 859 SHEET 1 AA6 2 VAL G 858 ARG G 860 0 SHEET 2 AA6 2 GLN G 866 TRP G 868 -1 O ILE G 867 N ILE G 859 LINK C THR P 3 N 4WQ P 4 1555 1555 1.33 LINK C 4WQ P 4 N GLN P 5 1555 1555 1.34 LINK C THR D 3 N 4WQ D 4 1555 1555 1.33 LINK C 4WQ D 4 N GLN D 5 1555 1555 1.34 LINK C THR F 3 N 4WQ F 4 1555 1555 1.32 LINK C 4WQ F 4 N GLN F 5 1555 1555 1.34 LINK C THR H 3 N 4WQ H 4 1555 1555 1.33 LINK C 4WQ H 4 N GLN H 5 1555 1555 1.34 LINK SG CYS A 870 ZN ZN A1002 1555 1555 2.21 LINK SG CYS A 873 ZN ZN A1002 1555 1555 2.35 LINK SG CYS A 885 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 888 ZN ZN A1001 1555 1555 2.23 LINK ND1 HIS A 893 ZN ZN A1002 1555 1555 2.04 LINK SG CYS A 896 ZN ZN A1002 1555 1555 2.29 LINK SG CYS A 911 ZN ZN A1001 1555 1555 2.45 LINK SG CYS A 914 ZN ZN A1001 1555 1555 2.42 LINK SG CYS C 870 ZN ZN C1002 1555 1555 2.27 LINK SG CYS C 873 ZN ZN C1002 1555 1555 2.33 LINK SG CYS C 885 ZN ZN C1001 1555 1555 2.32 LINK SG CYS C 888 ZN ZN C1001 1555 1555 2.15 LINK ND1 HIS C 893 ZN ZN C1002 1555 1555 2.03 LINK SG CYS C 896 ZN ZN C1002 1555 1555 2.26 LINK SG CYS C 911 ZN ZN C1001 1555 1555 2.43 LINK SG CYS C 914 ZN ZN C1001 1555 1555 2.42 LINK SG CYS E 870 ZN ZN E1002 1555 1555 2.26 LINK SG CYS E 873 ZN ZN E1002 1555 1555 2.29 LINK SG CYS E 885 ZN ZN E1001 1555 1555 2.40 LINK SG CYS E 888 ZN ZN E1001 1555 1555 2.18 LINK ND1 HIS E 893 ZN ZN E1002 1555 1555 2.07 LINK SG CYS E 896 ZN ZN E1002 1555 1555 2.33 LINK SG CYS E 911 ZN ZN E1001 1555 1555 2.49 LINK SG CYS E 914 ZN ZN E1001 1555 1555 2.46 LINK SG CYS G 870 ZN ZN G1002 1555 1555 2.28 LINK SG CYS G 873 ZN ZN G1002 1555 1555 2.34 LINK SG CYS G 885 ZN ZN G1001 1555 1555 2.42 LINK SG CYS G 888 ZN ZN G1001 1555 1555 2.21 LINK ND1 HIS G 893 ZN ZN G1002 1555 1555 1.92 LINK SG CYS G 896 ZN ZN G1002 1555 1555 2.30 LINK SG CYS G 911 ZN ZN G1001 1555 1555 2.36 LINK SG CYS G 914 ZN ZN G1001 1555 1555 2.47 SITE 1 AC1 5 CYS A 885 CYS A 888 PHE A 910 CYS A 911 SITE 2 AC1 5 CYS A 914 SITE 1 AC2 4 CYS A 870 CYS A 873 HIS A 893 CYS A 896 SITE 1 AC3 5 CYS C 885 CYS C 888 PHE C 910 CYS C 911 SITE 2 AC3 5 CYS C 914 SITE 1 AC4 4 CYS C 870 CYS C 873 HIS C 893 CYS C 896 SITE 1 AC5 5 CYS E 885 CYS E 888 PHE E 910 CYS E 911 SITE 2 AC5 5 CYS E 914 SITE 1 AC6 4 CYS E 870 CYS E 873 HIS E 893 CYS E 896 SITE 1 AC7 5 CYS G 885 CYS G 888 PHE G 910 CYS G 911 SITE 2 AC7 5 CYS G 914 SITE 1 AC8 4 CYS G 870 CYS G 873 HIS G 893 CYS G 896 SITE 1 AC9 8 TRP C 868 PRO C 881 MET C 882 TRP C 891 SITE 2 AC9 8 THR D 3 THR D 6 TYR G 857 VAL G 858 SITE 1 AD1 7 TYR A 857 VAL A 858 ILE A 859 PRO E 881 SITE 2 AD1 7 MET E 882 THR F 3 THR F 6 SITE 1 AD2 8 TYR C 857 VAL C 858 ILE C 859 TRP G 868 SITE 2 AD2 8 PRO G 881 MET G 882 THR H 3 THR H 6 SITE 1 AD3 9 PRO A 881 MET A 882 TRP A 891 TYR E 857 SITE 2 AD3 9 VAL E 858 THR P 3 THR P 6 HOH P 101 SITE 3 AD3 9 HOH P 103 CRYST1 30.212 50.105 85.949 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033099 0.000000 0.000002 0.00000 SCALE2 0.000000 0.019958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011635 0.00000