PDB Short entry for 5C5A HEADER LIGASE 19-JUN-15 5C5A TITLE CRYSTAL STRUCTURE OF HDM2 IN COMPLEX WITH NUTLIN-3A CAVEAT 5C5A ASN B 79 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING COMPND 5 PROTEIN MDM2; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DRUG DESIGN, HDM2, COMPLEX STRUCTURE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ORTS,M.A.WAELTI,M.MARSH,L.VERA,A.D.GOSSERT,P.GUENTERT,R.RIEK REVDAT 2 10-JAN-24 5C5A 1 REMARK REVDAT 1 29-JUN-16 5C5A 0 JRNL AUTH J.ORTS,M.A.WAELTI,M.MARSH,L.VERA,A.D.GOSSERT,P.GUENTERT, JRNL AUTH 2 R.RIEK JRNL TITL NMR MOLECULAR REPLACEMENT, NMR2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.8 REMARK 3 NUMBER OF REFLECTIONS : 53749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.780 REMARK 3 FREE R VALUE TEST SET COUNT : 3521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6475 - 3.3491 0.95 4873 180 0.1509 0.1522 REMARK 3 2 3.3491 - 2.6584 0.95 4934 190 0.1316 0.1492 REMARK 3 3 2.6584 - 2.3224 0.95 4877 190 0.1282 0.1387 REMARK 3 4 2.3224 - 2.1101 0.94 4816 193 0.1121 0.0967 REMARK 3 5 2.1101 - 1.9588 0.95 4854 191 0.1115 0.1628 REMARK 3 6 1.9588 - 1.8434 0.95 4969 196 0.1222 0.1281 REMARK 3 7 1.8434 - 1.7510 0.95 4850 164 0.1289 0.1388 REMARK 3 8 1.7510 - 1.6748 0.95 4759 216 0.1273 0.1558 REMARK 3 9 1.6748 - 1.6103 0.93 4874 165 0.1417 0.1876 REMARK 3 10 1.6103 - 1.5548 0.92 4676 195 0.1558 0.1750 REMARK 3 11 1.5548 - 1.5061 0.92 4698 178 0.1731 0.2306 REMARK 3 12 1.5061 - 1.4631 0.89 4588 179 0.1911 0.1899 REMARK 3 13 1.4631 - 1.4246 0.86 4345 206 0.2076 0.2133 REMARK 3 14 1.4246 - 1.3898 0.85 4421 178 0.2357 0.3062 REMARK 3 15 1.3898 - 1.3582 0.83 4227 152 0.2582 0.3439 REMARK 3 16 1.3582 - 1.3293 0.78 4046 168 0.2626 0.3254 REMARK 3 17 1.3293 - 1.3027 0.67 3431 143 0.2837 0.2705 REMARK 3 18 1.3027 - 1.2781 0.57 2958 116 0.2851 0.3207 REMARK 3 19 1.2781 - 1.2553 0.48 2417 90 0.3031 0.2757 REMARK 3 20 1.2553 - 1.2340 0.38 1965 82 0.3315 0.2823 REMARK 3 21 1.2340 - 1.2141 0.30 1512 57 0.3173 0.3461 REMARK 3 22 1.2141 - 1.1954 0.22 1135 47 0.3152 0.2936 REMARK 3 23 1.1954 - 1.1779 0.14 747 17 0.3235 0.4497 REMARK 3 24 1.1779 - 1.1613 0.07 379 24 0.3550 0.4235 REMARK 3 25 1.1613 - 1.1456 0.03 162 4 0.4376 0.5061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1708 REMARK 3 ANGLE : 1.593 2322 REMARK 3 CHIRALITY : 0.189 256 REMARK 3 PLANARITY : 0.009 338 REMARK 3 DIHEDRAL : 12.080 702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.146 REMARK 200 RESOLUTION RANGE LOW (A) : 41.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06794 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, 2.2M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.81500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 319 O HOH B 380 2.05 REMARK 500 O HOH B 366 O HOH B 382 2.06 REMARK 500 O HOH B 357 O HOH B 366 2.08 REMARK 500 O HOH A 382 O HOH A 386 2.12 REMARK 500 O HOH B 360 O HOH B 368 2.14 REMARK 500 O HOH A 377 O HOH A 384 2.15 REMARK 500 O HOH A 375 O HOH A 377 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 362 O HOH B 380 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 52 CB GLU A 52 CG -0.120 REMARK 500 GLU B 52 CB GLU B 52 CG -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 77.13 -156.77 REMARK 500 ASN A 79 9.00 53.13 REMARK 500 GLN B 71 76.17 -159.28 REMARK 500 ASN B 79 30.38 -89.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NUT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NUT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 206 DBREF 5C5A A 20 111 UNP Q00987 MDM2_HUMAN 20 111 DBREF 5C5A B 20 111 UNP Q00987 MDM2_HUMAN 20 111 SEQRES 1 A 92 PRO ALA SER GLU GLN GLU THR LEU VAL ARG PRO LYS PRO SEQRES 2 A 92 LEU LEU LEU LYS LEU LEU LYS SER VAL GLY ALA GLN LYS SEQRES 3 A 92 ASP THR TYR THR MET LYS GLU VAL LEU PHE TYR LEU GLY SEQRES 4 A 92 GLN TYR ILE MET THR LYS ARG LEU TYR ASP GLU LYS GLN SEQRES 5 A 92 GLN HIS ILE VAL TYR CYS SER ASN ASP LEU LEU GLY ASP SEQRES 6 A 92 LEU PHE GLY VAL PRO SER PHE SER VAL LYS GLU HIS ARG SEQRES 7 A 92 LYS ILE TYR THR MET ILE TYR ARG ASN LEU VAL VAL VAL SEQRES 8 A 92 ASN SEQRES 1 B 92 PRO ALA SER GLU GLN GLU THR LEU VAL ARG PRO LYS PRO SEQRES 2 B 92 LEU LEU LEU LYS LEU LEU LYS SER VAL GLY ALA GLN LYS SEQRES 3 B 92 ASP THR TYR THR MET LYS GLU VAL LEU PHE TYR LEU GLY SEQRES 4 B 92 GLN TYR ILE MET THR LYS ARG LEU TYR ASP GLU LYS GLN SEQRES 5 B 92 GLN HIS ILE VAL TYR CYS SER ASN ASP LEU LEU GLY ASP SEQRES 6 B 92 LEU PHE GLY VAL PRO SER PHE SER VAL LYS GLU HIS ARG SEQRES 7 B 92 LYS ILE TYR THR MET ILE TYR ARG ASN LEU VAL VAL VAL SEQRES 8 B 92 ASN HET NUT A 201 70 HET SO4 A 202 5 HET CL A 203 1 HET IOD A 204 1 HET NUT B 201 70 HET SO4 B 202 5 HET CL B 203 1 HET IOD B 204 1 HET IOD B 205 1 HET IOD B 206 1 HETNAM NUT 4-({(4S,5R)-4,5-BIS(4-CHLOROPHENYL)-2-[4-METHOXY-2- HETNAM 2 NUT (PROPAN-2-YLOXY)PHENYL]-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NUT YL}CARBONYL)PIPERAZIN-2-ONE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETSYN NUT NUTLIN 3A FORMUL 3 NUT 2(C30 H30 CL2 N4 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CL 2(CL 1-) FORMUL 6 IOD 4(I 1-) FORMUL 13 HOH *172(H2 O) HELIX 1 AA1 LYS A 31 GLY A 42 1 12 HELIX 2 AA2 MET A 50 ARG A 65 1 16 HELIX 3 AA3 ASP A 80 GLY A 87 1 8 HELIX 4 AA4 GLU A 95 ARG A 105 1 11 HELIX 5 AA5 LYS B 31 GLY B 42 1 12 HELIX 6 AA6 MET B 50 ARG B 65 1 16 HELIX 7 AA7 ASP B 80 GLY B 87 1 8 HELIX 8 AA8 GLU B 95 ARG B 105 1 11 SHEET 1 AA1 3 TYR A 48 THR A 49 0 SHEET 2 AA1 3 LEU A 27 PRO A 30 -1 N VAL A 28 O TYR A 48 SHEET 3 AA1 3 LEU A 107 VAL A 109 -1 O VAL A 108 N ARG A 29 SHEET 1 AA2 3 TYR A 67 ASP A 68 0 SHEET 2 AA2 3 GLN A 71 TYR A 76 -1 O ILE A 74 N ASP A 68 SHEET 3 AA2 3 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 AA3 3 TYR B 48 THR B 49 0 SHEET 2 AA3 3 LEU B 27 PRO B 30 -1 N VAL B 28 O TYR B 48 SHEET 3 AA3 3 LEU B 107 VAL B 109 -1 O VAL B 108 N ARG B 29 SHEET 1 AA4 3 TYR B 67 ASP B 68 0 SHEET 2 AA4 3 GLN B 71 TYR B 76 -1 O ILE B 74 N ASP B 68 SHEET 3 AA4 3 SER B 90 SER B 92 -1 O PHE B 91 N VAL B 75 SITE 1 AC1 12 LEU A 54 GLY A 58 GLN A 59 MET A 62 SITE 2 AC1 12 GLN A 72 VAL A 93 HIS A 96 ILE A 99 SITE 3 AC1 12 TYR A 100 HOH A 335 HOH A 350 ARG B 29 SITE 1 AC2 3 ARG A 105 HOH A 302 HOH A 304 SITE 1 AC3 2 THR A 26 LYS A 51 SITE 1 AC4 12 ARG A 29 LEU B 54 GLY B 58 GLN B 59 SITE 2 AC4 12 MET B 62 GLN B 72 VAL B 93 HIS B 96 SITE 3 AC4 12 ILE B 99 TYR B 100 HOH B 332 HOH B 347 SITE 1 AC5 7 SER B 22 GLU B 23 GLN B 24 LYS B 70 SITE 2 AC5 7 HOH B 304 HOH B 320 HOH B 329 SITE 1 AC6 2 THR B 26 LYS B 51 SITE 1 AC7 1 LEU A 33 SITE 1 AC8 1 LEU B 33 CRYST1 41.620 43.630 52.670 90.00 90.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024027 0.000000 0.000016 0.00000 SCALE2 0.000000 0.022920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018986 0.00000