PDB Short entry for 5CDP HEADER ISOMERASE 04-JUL-15 5CDP TITLE 2.45A STRUCTURE OF ETOPOSIDE WITH S.AUREUS DNA GYRASE AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 9-491; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 417-542, 580-640; COMPND 11 SYNONYM: GREEK KEY DELETION CONSTRUCT; COMPND 12 EC: 5.99.1.3,5.99.1.3; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(*AP*GP*CP*CP*GP*TP*AP*G*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 17 CHAIN: E, F; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'- COMPND 21 D(*AP*GP*CP*CP*GP*TP*AP*G*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 22 CHAIN: G, H; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN N315); SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: GYRA, SA0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN N315); SOURCE 10 ORGANISM_TAXID: 158879; SOURCE 11 STRAIN: N315; SOURCE 12 GENE: GYRB, SA0005; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS TYPE IIA TOPOISOMERASE, ANTIBACTERIAL, INHIBITOR, ISOMERASE, FUSION KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.BAX,V.SRIKANNATHASAN,P.F.CHAN REVDAT 2 10-JAN-24 5CDP 1 COMPND HETNAM LINK REVDAT 1 16-DEC-15 5CDP 0 JRNL AUTH P.F.CHAN,V.SRIKANNATHASAN,J.HUANG,H.CUI,A.P.FOSBERRY,M.GU, JRNL AUTH 2 M.M.HANN,M.HIBBS,P.HOMES,K.INGRAHAM,J.PIZZOLLO,C.SHEN, JRNL AUTH 3 A.J.SHILLINGS,C.E.SPITZFADEN,R.TANNER,A.J.THEOBALD, JRNL AUTH 4 R.A.STAVENGER,B.D.BAX,M.N.GWYNN JRNL TITL STRUCTURAL BASIS OF DNA GYRASE INHIBITION BY ANTIBACTERIAL JRNL TITL 2 QPT-1, ANTICANCER DRUG ETOPOSIDE AND MOXIFLOXACIN. JRNL REF NAT COMMUN V. 6 10048 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26640131 JRNL DOI 10.1038/NCOMMS10048 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.SRIKANNATHASAN,A.WOHLKONIG,A.SHILLINGS,O.SINGH,P.F.CHAN, REMARK 1 AUTH 2 J.HUANG,M.N.GWYNN,A.P.FOSBERRY,P.HOMES,M.HIBBS,A.J.THEOBALD, REMARK 1 AUTH 3 C.SPITZFADEN,B.D.BAX REMARK 1 TITL CRYSTALLIZATION AND INITIAL CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 COVALENT DNA-CLEAVAGE COMPLEXES OF STAPHYLOCCOCUS AUREUS DNA REMARK 1 TITL 3 GYRASE WITH QPT-1, MOXIFLOXACIN AND ETOPOSIDE. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 71 1242 2015 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 26457513 REMARK 1 DOI 10.1107/S2053230X15015290 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 70923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2860 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5110 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2192 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4932 REMARK 3 BIN R VALUE (WORKING SET) : 0.2181 REMARK 3 BIN FREE R VALUE : 0.2491 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10611 REMARK 3 NUCLEIC ACID ATOMS : 799 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 767 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92030 REMARK 3 B22 (A**2) : 0.92030 REMARK 3 B33 (A**2) : -1.84070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.283 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.347 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.218 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.345 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.221 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 12151 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 16614 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4397 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 335 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1700 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 12151 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1594 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 14423 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.37 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|417 - B|608 M|1001 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.5671 54.1391 63.5699 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.0452 REMARK 3 T33: 0.0276 T12: 0.0139 REMARK 3 T13: 0.0149 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 3.2051 L22: 0.4943 REMARK 3 L33: 0.6927 L12: 0.2480 REMARK 3 L13: -1.0224 L23: -0.3826 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.3411 S13: 0.2569 REMARK 3 S21: -0.0010 S22: 0.0126 S23: 0.1253 REMARK 3 S31: -0.0323 S32: 0.0476 S33: -0.0256 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|29 - A|244 A|328 - A|369 A|461 - A|491 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.1545 29.4476 34.4189 REMARK 3 T TENSOR REMARK 3 T11: -0.0252 T22: -0.1168 REMARK 3 T33: -0.0367 T12: 0.0116 REMARK 3 T13: 0.0199 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.0036 L22: 1.0030 REMARK 3 L33: 0.8450 L12: 0.1172 REMARK 3 L13: -0.0144 L23: -0.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0128 S13: -0.1333 REMARK 3 S21: 0.0892 S22: 0.0093 S23: -0.0178 REMARK 3 S31: 0.0350 S32: 0.0281 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|374 - A|379 A|451 - A|460 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.7393 -2.1517 40.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: -0.0737 REMARK 3 T33: 0.1256 T12: 0.0397 REMARK 3 T13: 0.0051 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: -1.3516 L22: 2.4014 REMARK 3 L33: 0.5606 L12: 1.1690 REMARK 3 L13: 0.8437 L23: -0.6525 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0571 S13: -0.0003 REMARK 3 S21: -0.0107 S22: -0.0445 S23: -0.0679 REMARK 3 S31: 0.0215 S32: 0.0961 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|380 - A|450 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.4855 -13.3272 46.3929 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: -0.0537 REMARK 3 T33: 0.0540 T12: 0.0313 REMARK 3 T13: 0.0109 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.7484 L22: 1.6300 REMARK 3 L33: 0.0005 L12: 0.7670 REMARK 3 L13: 0.6343 L23: 0.1133 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -0.1881 S13: -0.0610 REMARK 3 S21: -0.0320 S22: -0.0445 S23: -0.2155 REMARK 3 S31: 0.0880 S32: -0.1848 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|9 - A|28 B|609 - B|640 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.9666 47.0118 61.8178 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0796 REMARK 3 T33: 0.0046 T12: 0.0330 REMARK 3 T13: -0.0003 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.9039 L22: 0.8306 REMARK 3 L33: 4.4554 L12: -0.0902 REMARK 3 L13: 0.7658 L23: 2.3874 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.3004 S13: 0.0583 REMARK 3 S21: 0.1801 S22: -0.0176 S23: -0.0874 REMARK 3 S31: 0.1145 S32: 0.1026 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { D|417 - D|608 M|1 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.4807 53.7790 16.5289 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1253 REMARK 3 T33: 0.0673 T12: 0.0498 REMARK 3 T13: 0.0214 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 4.4306 L22: 1.4106 REMARK 3 L33: 0.6911 L12: -0.8232 REMARK 3 L13: -0.5783 L23: 0.5159 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.3700 S13: 0.3353 REMARK 3 S21: -0.0734 S22: 0.0344 S23: -0.1200 REMARK 3 S31: -0.2424 S32: -0.0363 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { C|29 - C|244 C|328 - C|329 C|461 - C|490 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.6388 34.1843 48.0776 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: -0.0883 REMARK 3 T33: -0.0252 T12: 0.0650 REMARK 3 T13: 0.0200 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.0923 L22: 0.5551 REMARK 3 L33: 0.6315 L12: -0.0406 REMARK 3 L13: -0.0590 L23: 0.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.0134 S13: -0.1600 REMARK 3 S21: -0.0493 S22: -0.0280 S23: 0.0127 REMARK 3 S31: 0.0122 S32: 0.0138 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { C|373 - C|379 C|451 - C|460 } REMARK 3 ORIGIN FOR THE GROUP (A): -22.9210 2.4373 43.8096 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: -0.0712 REMARK 3 T33: 0.1655 T12: -0.0118 REMARK 3 T13: 0.0325 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: -0.0022 L22: 2.0690 REMARK 3 L33: 0.6855 L12: -0.5518 REMARK 3 L13: 1.3587 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0257 S13: 0.0314 REMARK 3 S21: -0.0152 S22: -0.0651 S23: 0.0841 REMARK 3 S31: 0.0502 S32: -0.0382 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { C|380 - C|450 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.3218 -11.7244 40.7547 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: -0.1042 REMARK 3 T33: 0.0402 T12: 0.0261 REMARK 3 T13: 0.0143 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.5642 L22: 1.4889 REMARK 3 L33: 0.2998 L12: -0.5585 REMARK 3 L13: -0.0225 L23: -0.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.0972 S13: -0.1630 REMARK 3 S21: 0.0023 S22: -0.0481 S23: 0.0320 REMARK 3 S31: 0.0542 S32: 0.0968 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { C|10 - C|28 D|609 - D|639 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.8219 49.8194 18.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1349 REMARK 3 T33: -0.0166 T12: 0.0860 REMARK 3 T13: -0.0120 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.1185 L22: 0.9928 REMARK 3 L33: 3.8957 L12: -0.4596 REMARK 3 L13: 1.8084 L23: -0.9612 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.2974 S13: 0.0284 REMARK 3 S21: -0.1661 S22: -0.0072 S23: -0.0028 REMARK 3 S31: 0.0290 S32: -0.1634 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { E|1 - E|8 F|2008 - F|2019 I|1 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.9598 50.9478 40.3780 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: -0.0035 REMARK 3 T33: 0.1563 T12: -0.0441 REMARK 3 T13: -0.0267 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.9631 L22: 0.2604 REMARK 3 L33: 1.4662 L12: -0.7961 REMARK 3 L13: -0.2890 L23: 0.3679 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: 0.1388 S13: 0.1285 REMARK 3 S21: -0.1856 S22: 0.0074 S23: 0.1239 REMARK 3 S31: -0.2016 S32: -0.2386 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { E|2008 - E|2020 F|1 - F|8 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.7039 53.6406 39.6435 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.0245 REMARK 3 T33: 0.1576 T12: 0.1406 REMARK 3 T13: -0.0299 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.6889 L22: 0.8307 REMARK 3 L33: 1.0586 L12: 0.9277 REMARK 3 L13: -0.5733 L23: -0.4774 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.0809 S13: 0.1575 REMARK 3 S21: 0.1459 S22: 0.0163 S23: -0.0702 REMARK 3 S31: -0.1380 S32: 0.1771 S33: 0.0299 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2XCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM BISTRIS PH6.2, 11% PEG 5000 MME, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.08133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 274.16267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 205.62200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 342.70333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.54067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, G, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAINS B AND D IS A GREEK KEY DELETION CONSTRUCT IN WHICH RESIDUES REMARK 400 544-579 OF GYRB HAVE BEEN DELETED AND REPLACED WITH TWO RESIDUES TG. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE C 9 REMARK 465 GLY C 491 REMARK 465 ALA D 640 REMARK 465 DG G 2008 REMARK 465 DG H 2008 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 9 CG1 CG2 CD1 REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 LYS B 581 CG CD CE NZ REMARK 470 ASN C 10 CG OD1 ND2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 LYS C 227 CG CD CE NZ REMARK 470 LEU C 490 CG CD1 CD2 REMARK 470 LYS D 417 CG CD CE NZ REMARK 470 LYS D 607 CG CD CE NZ REMARK 470 DT H2020 C4' O4' C3' O3' C2' C1' N1 REMARK 470 DT H2020 C2 O2 N3 C4 O4 C5 C7 REMARK 470 DT H2020 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC G2012 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT G2014 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT G2020 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC H2013 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H2014 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC H2019 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -100.27 56.48 REMARK 500 ARG A 33 -71.48 -160.95 REMARK 500 MET A 58 46.14 -84.34 REMARK 500 ALA A 162 75.96 47.36 REMARK 500 ALA A 176 -137.44 -101.85 REMARK 500 ALA A 221 -119.83 57.27 REMARK 500 ASP A 311 -2.31 73.08 REMARK 500 PRO A 326 3.50 -65.51 REMARK 500 ASN A 334 85.16 -150.81 REMARK 500 TYR B 580 -147.35 43.80 REMARK 500 ARG C 33 -71.53 -160.81 REMARK 500 MET C 58 45.61 -83.27 REMARK 500 ALA C 162 76.32 47.10 REMARK 500 ALA C 176 -138.04 -102.73 REMARK 500 ALA C 221 -119.84 57.47 REMARK 500 PRO C 326 3.59 -65.29 REMARK 500 ASN C 334 85.11 -150.87 REMARK 500 ARG D 458 57.76 -119.11 REMARK 500 ARG D 458 74.97 -69.77 REMARK 500 ALA D 509 21.49 -74.48 REMARK 500 ASP D 510 -151.82 -103.11 REMARK 500 LYS D 581 -77.96 -81.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 798 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 322 O REMARK 620 2 THR A 325 O 98.9 REMARK 620 3 GLN A 328 O 117.0 88.6 REMARK 620 4 HOH A 899 O 80.2 175.8 88.2 REMARK 620 5 HOH A 960 O 141.5 94.2 99.3 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G2101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 935 O REMARK 620 2 HOH G2220 O 125.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 508 OD2 REMARK 620 2 ASP B 510 OD2 113.9 REMARK 620 3 HOH B1102 O 95.3 89.4 REMARK 620 4 HOH B1142 O 85.0 160.7 92.8 REMARK 620 5 HOH B1145 O 92.9 97.3 166.2 76.9 REMARK 620 6 HOH E 106 O 162.8 83.4 84.1 77.8 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 548 O REMARK 620 2 ASP D 508 OD2 135.2 REMARK 620 3 ASP D 510 OD2 76.9 121.3 REMARK 620 4 HOH D 802 O 134.1 86.7 98.2 REMARK 620 5 HOH D 821 O 96.8 71.6 166.5 77.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 435 OE2 REMARK 620 2 ASP D 508 OD2 89.0 REMARK 620 3 HOH D 802 O 65.5 110.6 REMARK 620 4 HOH D 821 O 142.1 89.9 79.6 REMARK 620 5 DG F 8 O3' 81.5 159.1 82.4 109.0 REMARK 620 6 HOH H2202 O 116.5 84.4 165.0 101.1 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H2102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 102 O REMARK 620 2 HOH F 110 O 81.9 REMARK 620 3 HOH H2204 O 161.2 86.4 REMARK 620 4 HOH H2206 O 97.7 172.0 91.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN G 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVP H 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 2102 DBREF 5CDP A 9 491 UNP Q99XG5 GYRA_STAAN 9 491 DBREF 5CDP B 417 543 UNP P66937 GYRB_STAAN 417 543 DBREF 5CDP B 580 640 UNP P66937 GYRB_STAAN 580 640 DBREF 5CDP C 9 491 UNP Q99XG5 GYRA_STAAN 9 491 DBREF 5CDP D 417 543 UNP P66937 GYRB_STAAN 417 543 DBREF 5CDP D 580 640 UNP P66937 GYRB_STAAN 580 640 DBREF 5CDP E 1 8 PDB 5CDP 5CDP 1 8 DBREF 5CDP G 2008 2020 PDB 5CDP 5CDP 2008 2020 DBREF 5CDP F 1 8 PDB 5CDP 5CDP 1 8 DBREF 5CDP H 2008 2020 PDB 5CDP 5CDP 2008 2020 SEQADV 5CDP PHE A 123 UNP Q99XG5 TYR 123 ENGINEERED MUTATION SEQADV 5CDP THR B 544 UNP P66937 LINKER SEQADV 5CDP GLY B 545 UNP P66937 LINKER SEQADV 5CDP PHE C 123 UNP Q99XG5 TYR 123 ENGINEERED MUTATION SEQADV 5CDP THR D 544 UNP P66937 LINKER SEQADV 5CDP GLY D 545 UNP P66937 LINKER SEQRES 1 A 483 ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SER SEQRES 2 A 483 PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG ALA SEQRES 3 A 483 LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS ARG SEQRES 4 A 483 ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR PRO SEQRES 5 A 483 ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY ASP SEQRES 6 A 483 VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER ILE SEQRES 7 A 483 TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER TYR SEQRES 8 A 483 ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SER SEQRES 9 A 483 MET ASP GLY ASP GLY ALA ALA ALA MET ARG PHE THR GLU SEQRES 10 A 483 ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG ASP SEQRES 11 A 483 ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR ASP SEQRES 12 A 483 GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG PHE SEQRES 13 A 483 PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA VAL SEQRES 14 A 483 GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR GLU SEQRES 15 A 483 LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO ASP SEQRES 16 A 483 ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY PRO SEQRES 17 A 483 ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER GLY SEQRES 18 A 483 ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE GLN SEQRES 19 A 483 MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY GLY SEQRES 20 A 483 ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN VAL SEQRES 21 A 483 ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU VAL SEQRES 22 A 483 ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG ASP SEQRES 23 A 483 GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE ASP SEQRES 24 A 483 VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN ASN SEQRES 25 A 483 LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY VAL SEQRES 26 A 483 ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU ILE SEQRES 27 A 483 ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS GLN SEQRES 28 A 483 LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU ARG SEQRES 29 A 483 LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU ARG SEQRES 30 A 483 ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR ILE SEQRES 31 A 483 ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER LEU SEQRES 32 A 483 GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN ALA SEQRES 33 A 483 ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU GLU SEQRES 34 A 483 ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU ASN SEQRES 35 A 483 TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU GLU SEQRES 36 A 483 VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU ILE SEQRES 37 A 483 ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE GLN SEQRES 38 A 483 LEU GLY SEQRES 1 B 190 LYS LEU ALA ASP CYS SER SER LYS SER PRO GLU GLU CYS SEQRES 2 B 190 GLU ILE PHE LEU VAL GLU GLY ASP SER ALA GLY GLY SER SEQRES 3 B 190 THR LYS SER GLY ARG ASP SER ARG THR GLN ALA ILE LEU SEQRES 4 B 190 PRO LEU ARG GLY LYS ILE LEU ASN VAL GLU LYS ALA ARG SEQRES 5 B 190 LEU ASP ARG ILE LEU ASN ASN ASN GLU ILE ARG GLN MET SEQRES 6 B 190 ILE THR ALA PHE GLY THR GLY ILE GLY GLY ASP PHE ASP SEQRES 7 B 190 LEU ALA LYS ALA ARG TYR HIS LYS ILE VAL ILE MET THR SEQRES 8 B 190 ASP ALA ASP VAL ASP GLY ALA HIS ILE ARG THR LEU LEU SEQRES 9 B 190 LEU THR PHE PHE TYR ARG PHE MET ARG PRO LEU ILE GLU SEQRES 10 B 190 ALA GLY TYR VAL TYR ILE ALA GLN PRO PRO THR GLY TYR SEQRES 11 B 190 LYS GLY LEU GLY GLU MET ASN ALA ASP GLN LEU TRP GLU SEQRES 12 B 190 THR THR MET ASN PRO GLU HIS ARG ALA LEU LEU GLN VAL SEQRES 13 B 190 LYS LEU GLU ASP ALA ILE GLU ALA ASP GLN THR PHE GLU SEQRES 14 B 190 MET LEU MET GLY ASP VAL VAL GLU ASN ARG ARG GLN PHE SEQRES 15 B 190 ILE GLU ASP ASN ALA VAL TYR ALA SEQRES 1 C 483 ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SER SEQRES 2 C 483 PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG ALA SEQRES 3 C 483 LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS ARG SEQRES 4 C 483 ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR PRO SEQRES 5 C 483 ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY ASP SEQRES 6 C 483 VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER ILE SEQRES 7 C 483 TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER TYR SEQRES 8 C 483 ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SER SEQRES 9 C 483 MET ASP GLY ASP GLY ALA ALA ALA MET ARG PHE THR GLU SEQRES 10 C 483 ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG ASP SEQRES 11 C 483 ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR ASP SEQRES 12 C 483 GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG PHE SEQRES 13 C 483 PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA VAL SEQRES 14 C 483 GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR GLU SEQRES 15 C 483 LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO ASP SEQRES 16 C 483 ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY PRO SEQRES 17 C 483 ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER GLY SEQRES 18 C 483 ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE GLN SEQRES 19 C 483 MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY GLY SEQRES 20 C 483 ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN VAL SEQRES 21 C 483 ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU VAL SEQRES 22 C 483 ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG ASP SEQRES 23 C 483 GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE ASP SEQRES 24 C 483 VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN ASN SEQRES 25 C 483 LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY VAL SEQRES 26 C 483 ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU ILE SEQRES 27 C 483 ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS GLN SEQRES 28 C 483 LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU ARG SEQRES 29 C 483 LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU ARG SEQRES 30 C 483 ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR ILE SEQRES 31 C 483 ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER LEU SEQRES 32 C 483 GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN ALA SEQRES 33 C 483 ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU GLU SEQRES 34 C 483 ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU ASN SEQRES 35 C 483 TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU GLU SEQRES 36 C 483 VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU ILE SEQRES 37 C 483 ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE GLN SEQRES 38 C 483 LEU GLY SEQRES 1 D 190 LYS LEU ALA ASP CYS SER SER LYS SER PRO GLU GLU CYS SEQRES 2 D 190 GLU ILE PHE LEU VAL GLU GLY ASP SER ALA GLY GLY SER SEQRES 3 D 190 THR LYS SER GLY ARG ASP SER ARG THR GLN ALA ILE LEU SEQRES 4 D 190 PRO LEU ARG GLY LYS ILE LEU ASN VAL GLU LYS ALA ARG SEQRES 5 D 190 LEU ASP ARG ILE LEU ASN ASN ASN GLU ILE ARG GLN MET SEQRES 6 D 190 ILE THR ALA PHE GLY THR GLY ILE GLY GLY ASP PHE ASP SEQRES 7 D 190 LEU ALA LYS ALA ARG TYR HIS LYS ILE VAL ILE MET THR SEQRES 8 D 190 ASP ALA ASP VAL ASP GLY ALA HIS ILE ARG THR LEU LEU SEQRES 9 D 190 LEU THR PHE PHE TYR ARG PHE MET ARG PRO LEU ILE GLU SEQRES 10 D 190 ALA GLY TYR VAL TYR ILE ALA GLN PRO PRO THR GLY TYR SEQRES 11 D 190 LYS GLY LEU GLY GLU MET ASN ALA ASP GLN LEU TRP GLU SEQRES 12 D 190 THR THR MET ASN PRO GLU HIS ARG ALA LEU LEU GLN VAL SEQRES 13 D 190 LYS LEU GLU ASP ALA ILE GLU ALA ASP GLN THR PHE GLU SEQRES 14 D 190 MET LEU MET GLY ASP VAL VAL GLU ASN ARG ARG GLN PHE SEQRES 15 D 190 ILE GLU ASP ASN ALA VAL TYR ALA SEQRES 1 E 8 DA DG DC DC DG DT DA DG SEQRES 1 G 13 DG DG DT DA DC DC DT DA DC DG DG DC DT SEQRES 1 F 8 DA DG DC DC DG DT DA DG SEQRES 1 H 13 DG DG DT DA DC DC DT DA DC DG DG DC DT HET NA A 501 1 HET MN B1001 1 HET MN D 701 2 HET MN G2101 1 HET EVP H2101 42 HET NA H2102 1 HETNAM NA SODIUM ION HETNAM MN MANGANESE (II) ION HETNAM EVP (5S,5AR,8AR,9R)-9-(4-HYDROXY-3,5-DIMETHOXYPHENYL)-8- HETNAM 2 EVP OXO-5,5A,6,8,8A,9-HEXAHYDROFURO[3',4':6,7]NAPHTHO[2,3- HETNAM 3 EVP D][1,3]DIOXOL -5-YL 4,6-O-[(1R)-ETHYLIDENE]-BETA-D- HETNAM 4 EVP GLUCOPYRANOSIDE HETSYN EVP ETOPOSIDE; VP-16 FORMUL 9 NA 2(NA 1+) FORMUL 10 MN 3(MN 2+) FORMUL 13 EVP C29 H32 O13 FORMUL 15 HOH *767(H2 O) HELIX 1 AA1 ILE A 14 ARG A 33 1 20 HELIX 2 AA2 LYS A 43 GLN A 56 1 14 HELIX 3 AA3 SER A 67 TYR A 78 1 12 HELIX 4 AA4 GLY A 82 ALA A 94 1 13 HELIX 5 AA5 ILE A 131 ARG A 137 1 7 HELIX 6 AA6 PRO A 165 GLY A 171 1 7 HELIX 7 AA7 ASN A 187 ASN A 201 1 15 HELIX 8 AA8 SER A 205 MET A 210 1 6 HELIX 9 AA9 LYS A 227 GLY A 237 1 11 HELIX 10 AB1 ASN A 269 ASP A 283 1 15 HELIX 11 AB2 ASN A 313 THR A 325 1 13 HELIX 12 AB3 ASN A 347 HIS A 390 1 44 HELIX 13 AB4 HIS A 390 GLU A 400 1 11 HELIX 14 AB5 THR A 403 LYS A 416 1 14 HELIX 15 AB6 SER A 418 ASP A 427 1 10 HELIX 16 AB7 ARG A 429 THR A 434 5 6 HELIX 17 AB8 LEU A 436 ASP A 461 1 26 HELIX 18 AB9 ASP A 461 GLY A 481 1 21 HELIX 19 AC1 GLY B 436 ARG B 447 1 12 HELIX 20 AC2 ARG B 468 ASN B 475 1 8 HELIX 21 AC3 ASN B 475 GLY B 486 1 12 HELIX 22 AC4 ILE B 489 PHE B 493 5 5 HELIX 23 AC5 ASP B 494 ALA B 498 5 5 HELIX 24 AC6 ASP B 510 MET B 528 1 19 HELIX 25 AC7 MET B 528 ALA B 534 1 7 HELIX 26 AC8 GLY B 582 MET B 586 5 5 HELIX 27 AC9 ASN B 587 MET B 596 1 10 HELIX 28 AD1 ASP B 610 GLY B 623 1 14 HELIX 29 AD2 VAL B 625 ALA B 637 1 13 HELIX 30 AD3 ILE C 14 ARG C 33 1 20 HELIX 31 AD4 LYS C 43 GLN C 56 1 14 HELIX 32 AD5 SER C 67 TYR C 78 1 12 HELIX 33 AD6 GLY C 82 MET C 93 1 12 HELIX 34 AD7 THR C 129 ARG C 137 1 9 HELIX 35 AD8 PRO C 165 GLY C 171 1 7 HELIX 36 AD9 ASN C 187 ASN C 201 1 15 HELIX 37 AE1 SER C 205 MET C 210 1 6 HELIX 38 AE2 LYS C 227 GLY C 237 1 11 HELIX 39 AE3 ASN C 269 ASP C 283 1 15 HELIX 40 AE4 ASN C 313 THR C 325 1 13 HELIX 41 AE5 ASN C 347 HIS C 390 1 44 HELIX 42 AE6 HIS C 390 GLU C 400 1 11 HELIX 43 AE7 THR C 403 LYS C 416 1 14 HELIX 44 AE8 SER C 418 ASP C 427 1 10 HELIX 45 AE9 ARG C 429 LEU C 433 5 5 HELIX 46 AF1 THR C 434 ASP C 461 1 28 HELIX 47 AF2 ASP C 461 GLY C 481 1 21 HELIX 48 AF3 GLY D 436 ARG D 447 1 12 HELIX 49 AF4 ARG D 468 ASN D 475 1 8 HELIX 50 AF5 ASN D 475 GLY D 486 1 12 HELIX 51 AF6 ILE D 489 PHE D 493 5 5 HELIX 52 AF7 ASP D 494 ALA D 498 5 5 HELIX 53 AF8 ASP D 510 MET D 528 1 19 HELIX 54 AF9 MET D 528 ALA D 534 1 7 HELIX 55 AG1 GLY D 582 MET D 586 5 5 HELIX 56 AG2 ASN D 587 MET D 596 1 10 HELIX 57 AG3 ASP D 610 GLY D 623 1 14 HELIX 58 AG4 VAL D 625 ALA D 637 1 13 SHEET 1 AA1 6 GLU A 11 ASN A 13 0 SHEET 2 AA1 6 LEU B 604 LYS B 607 1 O LYS B 607 N ARG A 12 SHEET 3 AA1 6 VAL B 537 ILE B 539 -1 N VAL B 537 O VAL B 606 SHEET 4 AA1 6 LYS B 502 MET B 506 1 N ILE B 503 O TYR B 538 SHEET 5 AA1 6 GLU B 430 GLU B 435 1 N ILE B 431 O VAL B 504 SHEET 6 AA1 6 GLN B 452 LEU B 457 1 O ALA B 453 N GLU B 430 SHEET 1 AA2 3 LYS A 65 LYS A 66 0 SHEET 2 AA2 3 GLU A 125 MET A 128 -1 O ALA A 126 N LYS A 65 SHEET 3 AA2 3 VAL A 104 GLN A 107 -1 N ASP A 105 O ARG A 127 SHEET 1 AA3 2 PHE A 146 ASP A 148 0 SHEET 2 AA3 2 ARG A 155 PRO A 157 -1 O GLU A 156 N ILE A 147 SHEET 1 AA4 2 ALA A 172 ILE A 175 0 SHEET 2 AA4 2 ALA A 180 ILE A 183 -1 O ILE A 183 N ALA A 172 SHEET 1 AA5 4 GLN A 328 ASN A 334 0 SHEET 2 AA5 4 ARG A 238 ARG A 244 -1 N MET A 243 O THR A 329 SHEET 3 AA5 4 LEU A 223 LEU A 225 -1 N LEU A 223 O ARG A 244 SHEET 4 AA5 4 GLU A 487 GLN A 489 1 O GLN A 489 N ILE A 224 SHEET 1 AA6 4 ARG A 246 GLY A 253 0 SHEET 2 AA6 4 ARG A 256 GLU A 263 -1 O VAL A 260 N VAL A 248 SHEET 3 AA6 4 VAL A 304 VAL A 308 -1 O VAL A 304 N VAL A 261 SHEET 4 AA6 4 ILE A 289 ASP A 294 -1 N ARG A 293 O VAL A 305 SHEET 1 AA7 2 ILE A 336 VAL A 339 0 SHEET 2 AA7 2 ARG A 342 LEU A 345 -1 O ARG A 342 N VAL A 339 SHEET 1 AA8 6 GLU C 11 ASN C 13 0 SHEET 2 AA8 6 LEU D 604 LYS D 607 1 O LYS D 607 N ARG C 12 SHEET 3 AA8 6 VAL D 537 ILE D 539 -1 N VAL D 537 O VAL D 606 SHEET 4 AA8 6 LYS D 502 MET D 506 1 N ILE D 503 O TYR D 538 SHEET 5 AA8 6 GLU D 430 VAL D 434 1 N ILE D 431 O VAL D 504 SHEET 6 AA8 6 GLN D 452 PRO D 456 1 O ALA D 453 N GLU D 430 SHEET 1 AA9 3 LYS C 65 LYS C 66 0 SHEET 2 AA9 3 GLU C 125 MET C 128 -1 O ALA C 126 N LYS C 65 SHEET 3 AA9 3 VAL C 104 GLN C 107 -1 N ASP C 105 O ARG C 127 SHEET 1 AB1 2 PHE C 146 ASP C 148 0 SHEET 2 AB1 2 ARG C 155 PRO C 157 -1 O GLU C 156 N ILE C 147 SHEET 1 AB2 2 ALA C 172 ILE C 175 0 SHEET 2 AB2 2 ALA C 180 ILE C 183 -1 O ILE C 183 N ALA C 172 SHEET 1 AB3 4 GLN C 328 ASN C 334 0 SHEET 2 AB3 4 ARG C 238 ARG C 244 -1 N MET C 243 O THR C 329 SHEET 3 AB3 4 LEU C 223 LEU C 225 -1 N LEU C 223 O ARG C 244 SHEET 4 AB3 4 GLU C 487 GLN C 489 1 O GLN C 489 N ILE C 224 SHEET 1 AB4 4 ARG C 246 GLY C 253 0 SHEET 2 AB4 4 ARG C 256 GLU C 263 -1 O VAL C 260 N VAL C 248 SHEET 3 AB4 4 VAL C 304 VAL C 308 -1 O VAL C 304 N VAL C 261 SHEET 4 AB4 4 ILE C 289 ASP C 294 -1 N ARG C 293 O VAL C 305 SHEET 1 AB5 2 ILE C 336 VAL C 339 0 SHEET 2 AB5 2 ARG C 342 LEU C 345 -1 O ARG C 342 N VAL C 339 LINK O TYR A 322 NA NA A 501 1555 1555 2.36 LINK O THR A 325 NA NA A 501 1555 1555 2.32 LINK O GLN A 328 NA NA A 501 1555 1555 2.41 LINK NA NA A 501 O HOH A 899 1555 1555 2.36 LINK NA NA A 501 O HOH A 960 1555 1555 2.47 LINK O HOH A 935 MN MN G2101 1555 1555 2.77 LINK OD2 ASP B 508 MN MN B1001 1555 1555 2.39 LINK OD2 ASP B 510 MN MN B1001 1555 1555 2.11 LINK MN MN B1001 O HOH B1102 1555 1555 2.26 LINK MN MN B1001 O HOH B1142 1555 1555 2.04 LINK MN MN B1001 O HOH B1145 1555 1555 2.68 LINK MN MN B1001 O HOH E 106 1555 1555 2.45 LINK O BHOH C 548 MN B MN D 701 1555 1555 2.47 LINK OE2AGLU D 435 MN A MN D 701 1555 1555 2.18 LINK OD2AASP D 508 MN A MN D 701 1555 1555 2.11 LINK OD2BASP D 508 MN B MN D 701 1555 1555 2.14 LINK OD2BASP D 510 MN B MN D 701 1555 1555 2.04 LINK MN A MN D 701 O AHOH D 802 1555 1555 2.66 LINK MN B MN D 701 O BHOH D 802 1555 1555 2.10 LINK MN A MN D 701 O AHOH D 821 1555 1555 2.36 LINK MN B MN D 701 O BHOH D 821 1555 1555 2.66 LINK MN A MN D 701 O3' DG F 8 1555 1555 2.05 LINK MN A MN D 701 O HOH H2202 1555 1555 2.12 LINK MN MN G2101 O HOH G2220 1555 1555 2.67 LINK O HOH F 102 NA NA H2102 1555 1555 2.24 LINK O HOH F 110 NA NA H2102 1555 1555 2.53 LINK NA NA H2102 O HOH H2204 1555 1555 2.24 LINK NA NA H2102 O HOH H2206 1555 1555 2.26 SITE 1 AC1 5 TYR A 322 THR A 325 GLN A 328 HOH A 899 SITE 2 AC1 5 HOH A 960 SITE 1 AC2 6 ASP B 508 ASP B 510 HOH B1102 HOH B1142 SITE 2 AC2 6 HOH B1145 HOH E 106 SITE 1 AC3 8 HOH C 548 GLU D 435 ASP D 508 ASP D 510 SITE 2 AC3 8 HOH D 802 HOH D 821 DG F 8 HOH H2202 SITE 1 AC4 5 HOH A 735 HOH A 935 HOH C 754 DG G2009 SITE 2 AC4 5 HOH G2220 SITE 1 AC5 11 SER A 84 GLY B 436 ASP B 437 ARG B 458 SITE 2 AC5 11 GLY B 459 HOH C 612 DG E 8 DG G2009 SITE 3 AC5 11 DT G2010 DC H2012 DC H2013 SITE 1 AC6 5 HOH F 102 HOH F 110 DG H2009 HOH H2204 SITE 2 AC6 5 HOH H2206 CRYST1 93.364 93.364 411.244 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010711 0.006184 0.000000 0.00000 SCALE2 0.000000 0.012368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002432 0.00000