PDB Short entry for 5CQI HEADER HYDROLASE 21-JUL-15 5CQI TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC-DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 187-378; COMPND 5 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 6 EC: 3.5.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 4 06-MAR-24 5CQI 1 JRNL REMARK REVDAT 3 02-DEC-15 5CQI 1 JRNL REVDAT 2 14-OCT-15 5CQI 1 JRNL REVDAT 1 07-OCT-15 5CQI 0 JRNL AUTH K.SHI,M.A.CARPENTER,K.KURAHASHI,R.S.HARRIS,H.AIHARA JRNL TITL CRYSTAL STRUCTURE OF THE DNA DEAMINASE APOBEC3B CATALYTIC JRNL TITL 2 DOMAIN. JRNL REF J.BIOL.CHEM. V. 290 28120 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26416889 JRNL DOI 10.1074/JBC.M115.679951 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2166: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 16702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7881 - 3.9492 0.99 2882 161 0.1389 0.1736 REMARK 3 2 3.9492 - 3.1349 0.98 2890 153 0.1247 0.1627 REMARK 3 3 3.1349 - 2.7387 1.00 2911 147 0.1260 0.1826 REMARK 3 4 2.7387 - 2.4884 0.99 2910 156 0.1304 0.1646 REMARK 3 5 2.4884 - 2.3100 1.00 2915 149 0.1351 0.1763 REMARK 3 6 2.3100 - 2.1738 0.96 2798 153 0.1688 0.2041 REMARK 3 7 2.1738 - 2.0650 0.99 2902 146 0.1561 0.1877 REMARK 3 8 2.0650 - 1.9751 0.98 2862 157 0.1873 0.2245 REMARK 3 9 1.9751 - 1.8991 0.96 2836 147 0.2769 0.3104 REMARK 3 10 1.8991 - 1.8335 0.86 2515 137 0.2594 0.2749 REMARK 3 11 1.8335 - 1.7762 0.68 1988 115 0.2388 0.2603 REMARK 3 12 1.7762 - 1.7254 0.59 1734 92 0.2764 0.2574 REMARK 3 13 1.7254 - 1.6800 0.48 1390 83 0.2974 0.3487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1588 REMARK 3 ANGLE : 0.815 2153 REMARK 3 CHIRALITY : 0.050 218 REMARK 3 PLANARITY : 0.005 283 REMARK 3 DIHEDRAL : 15.508 937 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1523 -13.7848 -3.9193 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.1704 REMARK 3 T33: 0.1246 T12: -0.0171 REMARK 3 T13: 0.0420 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.0432 L22: 0.2270 REMARK 3 L33: 0.1117 L12: 0.0991 REMARK 3 L13: 0.0451 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.0966 S13: 0.0480 REMARK 3 S21: -0.0131 S22: 0.2280 S23: -0.2516 REMARK 3 S31: 0.0053 S32: 0.2494 S33: 0.0398 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3897 -11.3512 4.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.0985 REMARK 3 T33: 0.1184 T12: 0.0056 REMARK 3 T13: -0.0114 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: -0.0623 L22: 0.0963 REMARK 3 L33: 0.6797 L12: -0.0341 REMARK 3 L13: 0.0418 L23: 0.2636 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0400 S13: -0.0222 REMARK 3 S21: -0.1203 S22: -0.0183 S23: 0.0132 REMARK 3 S31: 0.0609 S32: 0.0300 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8461 1.0585 -2.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.1395 REMARK 3 T33: 0.0639 T12: 0.0016 REMARK 3 T13: -0.0357 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.0642 L22: 0.4177 REMARK 3 L33: 0.0869 L12: 0.1575 REMARK 3 L13: -0.0232 L23: -0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.2028 S12: -0.0118 S13: 0.0056 REMARK 3 S21: -0.1508 S22: 0.1050 S23: -0.0725 REMARK 3 S31: -0.0581 S32: -0.0707 S33: -0.0366 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9281 -0.4502 8.0417 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1015 REMARK 3 T33: 0.1025 T12: -0.0080 REMARK 3 T13: -0.0041 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0947 L22: 0.0419 REMARK 3 L33: 0.1032 L12: -0.0600 REMARK 3 L13: -0.0345 L23: 0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0121 S13: 0.0130 REMARK 3 S21: 0.0467 S22: 0.0227 S23: -0.0432 REMARK 3 S31: -0.0765 S32: 0.1966 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4911 -0.2648 10.7645 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0585 REMARK 3 T33: 0.0938 T12: 0.0141 REMARK 3 T13: -0.0040 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2738 L22: 0.1002 REMARK 3 L33: 0.3008 L12: -0.1005 REMARK 3 L13: 0.2499 L23: -0.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: -0.0114 S13: 0.0337 REMARK 3 S21: 0.0335 S22: -0.0294 S23: 0.0105 REMARK 3 S31: -0.0973 S32: -0.0142 S33: -0.0531 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1130 -12.0702 16.4284 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1002 REMARK 3 T33: 0.1047 T12: 0.0047 REMARK 3 T13: 0.0068 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1983 L22: 0.0879 REMARK 3 L33: 0.1166 L12: 0.0433 REMARK 3 L13: 0.0275 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0105 S13: -0.0223 REMARK 3 S21: 0.0867 S22: -0.0282 S23: 0.0149 REMARK 3 S31: 0.0403 S32: -0.0378 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7498 -18.1553 0.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.1004 REMARK 3 T33: 0.0936 T12: 0.0040 REMARK 3 T13: -0.0043 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5573 L22: 0.3325 REMARK 3 L33: 0.4226 L12: 0.4664 REMARK 3 L13: 0.3613 L23: 0.3341 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.0522 S13: -0.0566 REMARK 3 S21: -0.0200 S22: 0.0776 S23: -0.0055 REMARK 3 S31: 0.0275 S32: -0.0138 S33: 0.0380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 41.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES-NAOH, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.51000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.51000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 379 CB CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 306 CZ REMARK 480 GLN A 332 CD OE1 NE2 REMARK 480 GLU A 364 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 191 O HOH A 508 1.51 REMARK 500 O THR A 301 HH12 ARG A 304 1.57 REMARK 500 HH11 ARG A 212 O HOH A 503 1.58 REMARK 500 OD1 ASP A 194 O HOH A 501 1.92 REMARK 500 NZ LYS A 230 O HOH A 502 2.04 REMARK 500 O HOH A 561 O HOH A 659 2.10 REMARK 500 NH1 ARG A 212 O HOH A 503 2.11 REMARK 500 O HOH A 600 O HOH A 691 2.12 REMARK 500 O HOH A 650 O HOH A 664 2.12 REMARK 500 N ARG A 190 O HOH A 504 2.14 REMARK 500 O2 GOL A 404 O HOH A 505 2.15 REMARK 500 O HOH A 608 O HOH A 700 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 670 4445 2.01 REMARK 500 O HOH A 530 O HOH A 667 4545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 210 37.07 -159.07 REMARK 500 ASN A 300 73.07 -115.00 REMARK 500 GLN A 378 122.24 -35.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 112.1 REMARK 620 3 CYS A 289 SG 111.7 115.4 REMARK 620 4 HOH A 551 O 105.5 101.7 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQD RELATED DB: PDB REMARK 900 RELATED ID: 5CQH RELATED DB: PDB REMARK 900 RELATED ID: 5CQK RELATED DB: PDB DBREF 5CQI A 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 SEQADV 5CQI MET A 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 5CQI SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 5CQI SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 5CQI LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 5CQI A UNP Q9UH17 ALA 242 DELETION SEQADV 5CQI A UNP Q9UH17 LYS 243 DELETION SEQADV 5CQI A UNP Q9UH17 ASN 244 DELETION SEQADV 5CQI A UNP Q9UH17 LEU 245 DELETION SEQADV 5CQI A UNP Q9UH17 LEU 246 DELETION SEQADV 5CQI A UNP Q9UH17 CYS 247 DELETION SEQADV 5CQI A UNP Q9UH17 GLY 248 DELETION SEQADV 5CQI A UNP Q9UH17 PHE 249 DELETION SEQADV 5CQI SER A 250 UNP Q9UH17 TYR 250 ENGINEERED MUTATION SEQADV 5CQI LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 5CQI LEU A 379 UNP Q9UH17 EXPRESSION TAG SEQRES 1 A 186 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 186 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 186 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 186 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 186 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 186 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 186 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 186 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 186 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 186 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 186 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 186 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 186 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 186 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 186 ILE LEU GLN LEU HET ZN A 401 1 HET GOL A 402 14 HET GOL A 403 14 HET GOL A 404 14 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *215(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 ASP A 232 MET A 235 5 4 HELIX 3 AA3 HIS A 253 VAL A 262 1 10 HELIX 4 AA4 PRO A 263 GLN A 266 5 4 HELIX 5 AA5 GLY A 288 ASN A 300 1 13 HELIX 6 AA6 LEU A 318 ALA A 329 1 12 HELIX 7 AA7 THR A 337 VAL A 349 1 13 HELIX 8 AA8 GLY A 361 GLN A 378 1 18 SHEET 1 AA1 3 THR A 227 LYS A 230 0 SHEET 2 AA1 3 TYR A 215 ASP A 224 -1 N ASP A 224 O THR A 227 SHEET 3 AA1 3 GLY A 236 CYS A 239 -1 O GLY A 236 N TYR A 218 SHEET 1 AA2 5 THR A 227 LYS A 230 0 SHEET 2 AA2 5 TYR A 215 ASP A 224 -1 N ASP A 224 O THR A 227 SHEET 3 AA2 5 TYR A 273 TRP A 281 -1 O PHE A 278 N CYS A 217 SHEET 4 AA2 5 VAL A 303 ARG A 311 1 O ARG A 304 N VAL A 275 SHEET 5 AA2 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 LINK ND1 HIS A 253 ZN ZN A 401 1555 1555 2.04 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 289 ZN ZN A 401 1555 1555 2.28 LINK ZN ZN A 401 O HOH A 551 1555 1555 2.02 SITE 1 AC1 4 HIS A 253 CYS A 284 CYS A 289 HOH A 551 SITE 1 AC2 10 ARG A 211 ARG A 212 GLN A 213 THR A 214 SITE 2 AC2 10 ASN A 240 HIS A 253 TYR A 313 HOH A 532 SITE 3 AC2 10 HOH A 551 HOH A 558 SITE 1 AC3 8 ARG A 212 GLN A 213 ASN A 240 SER A 250 SITE 2 AC3 8 GLY A 251 GLU A 342 HOH A 507 HOH A 558 SITE 1 AC4 7 ARG A 252 GLU A 292 ARG A 311 ASP A 314 SITE 2 AC4 7 TYR A 315 HOH A 505 HOH A 509 CRYST1 51.020 54.290 65.410 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015288 0.00000