PDB Short entry for 5CYB HEADER TRANSPORT PROTEIN 30-JUL-15 5CYB TITLE STRUCTURE OF A LIPOCALIN LIPOPROTEIN AFFECTING VIRULENCE IN TITLE 2 STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: ERS019416_00104, ERS019595_00220, ERS021447_05272, SOURCE 5 ERS022232_05596, ERS409134_00058, ERS409372_00175, ERS515225_00124; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIPOCALIN, LIPOPROTEIN, PCCL, VIRULENCE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CARRASCO-LOPEZ,M.R.ABDULLAH,S.HAMMERSCHMIDT,J.A.HERMOSO REVDAT 3 10-JAN-24 5CYB 1 REMARK REVDAT 2 06-SEP-17 5CYB 1 REMARK REVDAT 1 14-SEP-16 5CYB 0 JRNL AUTH M.R.ABDULLAH,C.CARRASCO-LOPEZ,M.SALEH,A.GOMEZ,L.PETRUSCHKA, JRNL AUTH 2 F.VOB,T.PRIBYL,J.A.HERMOSO,S.HAMMERSCHMIDT JRNL TITL UNRAVELING THE FUNCTION AND STRUCTURE OF A LIPOCALIN JRNL TITL 2 LIPOPROTEIN AFFECTING VIRULENCE IN STREPTOCOCCUS PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 13068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.020 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1297 - 4.0163 1.00 1885 141 0.1518 0.1696 REMARK 3 2 4.0163 - 3.1882 1.00 1760 139 0.1745 0.1998 REMARK 3 3 3.1882 - 2.7853 1.00 1732 127 0.2067 0.2628 REMARK 3 4 2.7853 - 2.5307 0.99 1725 129 0.2043 0.2191 REMARK 3 5 2.5307 - 2.3493 0.99 1703 130 0.2320 0.2509 REMARK 3 6 2.3493 - 2.2108 0.99 1684 135 0.3360 0.3610 REMARK 3 7 2.2108 - 2.1001 0.97 1662 116 0.3619 0.3708 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 723 REMARK 3 ANGLE : 1.287 979 REMARK 3 CHIRALITY : 0.056 118 REMARK 3 PLANARITY : 0.008 132 REMARK 3 DIHEDRAL : 16.573 272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7542 44.1940 30.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.4519 T22: 0.4529 REMARK 3 T33: 0.6131 T12: 0.0190 REMARK 3 T13: -0.0401 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 5.6054 L22: 6.4525 REMARK 3 L33: 7.4669 L12: -3.8341 REMARK 3 L13: 1.6264 L23: -0.3806 REMARK 3 S TENSOR REMARK 3 S11: -0.2824 S12: 0.3522 S13: -0.8468 REMARK 3 S21: -0.2125 S22: 0.0964 S23: 1.2347 REMARK 3 S31: -0.4634 S32: 0.0530 S33: 0.1576 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2778 27.7206 37.6745 REMARK 3 T TENSOR REMARK 3 T11: 0.4899 T22: 0.4919 REMARK 3 T33: 0.4209 T12: 0.1023 REMARK 3 T13: 0.0453 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 3.2845 L22: 2.8902 REMARK 3 L33: 4.7918 L12: 2.0918 REMARK 3 L13: -2.9258 L23: -2.7605 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: -1.0461 S13: -0.0450 REMARK 3 S21: 0.3408 S22: 0.5133 S23: 0.7924 REMARK 3 S31: 0.3577 S32: -0.0098 S33: -0.2461 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1825 28.1415 33.0053 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.4095 REMARK 3 T33: 0.2471 T12: 0.1399 REMARK 3 T13: 0.0433 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 9.5423 L22: 8.1160 REMARK 3 L33: 4.8851 L12: 6.4897 REMARK 3 L13: -4.2462 L23: -2.6924 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.1831 S13: -0.2843 REMARK 3 S21: 0.6490 S22: -0.3626 S23: 0.0047 REMARK 3 S31: -0.1054 S32: 0.2052 S33: 0.3960 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6957 25.1958 28.6575 REMARK 3 T TENSOR REMARK 3 T11: 0.4514 T22: 0.3231 REMARK 3 T33: 0.3425 T12: 0.1257 REMARK 3 T13: 0.0526 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.6954 L22: 4.5387 REMARK 3 L33: 2.0401 L12: -1.7456 REMARK 3 L13: 0.5426 L23: -0.7314 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: 0.1513 S13: -0.4216 REMARK 3 S21: 0.1115 S22: -0.0584 S23: 0.3072 REMARK 3 S31: 0.5013 S32: 0.1793 S33: 0.0710 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3204 34.7941 32.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.3992 REMARK 3 T33: 0.4339 T12: 0.0595 REMARK 3 T13: 0.0841 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.5952 L22: 3.8043 REMARK 3 L33: 3.9457 L12: -1.1597 REMARK 3 L13: 1.2598 L23: -1.0613 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: -0.3266 S13: -0.2135 REMARK 3 S21: 0.2720 S22: 0.1818 S23: 0.7714 REMARK 3 S31: -0.1642 S32: -0.4386 S33: -0.0957 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE PH 4.6 0.01 ZN REMARK 280 CHLORIDE 18% PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.58000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.29000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.93500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.64500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.22500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.58000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 21.29000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 10.64500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 31.93500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 53.74250 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 93.08474 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.51500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 PHE A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 PHE A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 ALA A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 GLN A 28 REMARK 465 VAL A 29 REMARK 465 GLN A 30 REMARK 465 GLN A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 GLN A 36 REMARK 465 GLN A 37 REMARK 465 VAL A 38 REMARK 465 GLN A 39 REMARK 465 GLN A 40 REMARK 465 PRO A 41 REMARK 465 ALA A 42 REMARK 465 GLN A 43 REMARK 465 GLN A 44 REMARK 465 ASN A 45 REMARK 465 THR A 46 REMARK 465 ASN A 47 REMARK 465 THR A 48 REMARK 465 ALA A 49 REMARK 465 ASN A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 53 REMARK 465 ASN A 54 REMARK 465 GLN A 55 REMARK 465 ASN A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 ALA A 59 REMARK 465 PRO A 60 REMARK 465 VAL A 61 REMARK 465 GLN A 62 REMARK 465 ASN A 63 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 304 O HOH A 359 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 131 79.65 -119.79 REMARK 500 ARG A 142 29.15 45.88 REMARK 500 ASP A 143 107.49 -46.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD1 REMARK 620 2 ASP A 81 OD2 49.8 REMARK 620 3 HOH A 304 O 64.2 112.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE1 REMARK 620 2 GLU A 100 OE2 42.8 REMARK 620 3 ASP A 102 OD2 88.1 118.2 REMARK 620 4 ASP A 104 OD2 128.1 103.6 76.3 REMARK 620 5 HOH A 341 O 127.7 91.6 144.0 77.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 HOH A 303 O 172.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 DBREF1 5CYB A 1 152 UNP A0A0T8N286_STREE DBREF2 5CYB A A0A0T8N286 1 152 SEQRES 1 A 152 MET LYS LEU LYS ARG PHE THR LEU SER LEU ALA SER LEU SEQRES 2 A 152 ALA SER PHE SER LEU LEU VAL ALA CYS SER GLN ARG ALA SEQRES 3 A 152 GLN GLN VAL GLN GLN PRO VAL ALA GLN GLN GLN VAL GLN SEQRES 4 A 152 GLN PRO ALA GLN GLN ASN THR ASN THR ALA ASN ALA GLY SEQRES 5 A 152 GLY ASN GLN ASN GLN ALA ALA PRO VAL GLN ASN GLN PRO SEQRES 6 A 152 VAL ALA GLN PRO THR ASP ILE ASP GLY THR TYR THR GLY SEQRES 7 A 152 GLN ASP ASP GLY ASP ARG ILE THR LEU VAL VAL THR GLY SEQRES 8 A 152 THR THR GLY THR TRP THR GLU LEU GLU SER ASP GLY ASP SEQRES 9 A 152 GLN LYS VAL LYS GLN VAL THR LEU ASP SER ALA ASN GLN SEQRES 10 A 152 ARG MET ILE ILE GLY ASP ASP VAL LYS ILE TYR THR VAL SEQRES 11 A 152 ASN GLY ASN GLN ILE VAL VAL ASP ASP MET ASP ARG ASP SEQRES 12 A 152 PRO SER ASP GLN ILE VAL LEU THR LYS HET GOL A 201 14 HET ACT A 202 7 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 CA 4(CA 2+) FORMUL 8 HOH *65(H2 O) HELIX 1 AA1 ASP A 143 GLN A 147 5 5 SHEET 1 AA1 9 GLY A 74 ASP A 80 0 SHEET 2 AA1 9 ASP A 83 THR A 90 -1 O LEU A 87 N TYR A 76 SHEET 3 AA1 9 THR A 93 LEU A 99 -1 O THR A 93 N THR A 90 SHEET 4 AA1 9 GLN A 105 ASP A 113 -1 O LYS A 108 N TRP A 96 SHEET 5 AA1 9 ARG A 118 ILE A 121 -1 O ARG A 118 N ASP A 113 SHEET 6 AA1 9 ASP A 124 ASN A 131 -1 O LYS A 126 N MET A 119 SHEET 7 AA1 9 GLN A 134 ASP A 138 -1 O GLN A 134 N ASN A 131 SHEET 8 AA1 9 ILE A 148 THR A 151 -1 O LEU A 150 N ILE A 135 SHEET 9 AA1 9 GLY A 74 ASP A 80 -1 N THR A 77 O THR A 151 LINK OD1 ASP A 81 CA CA A 203 1555 1555 2.36 LINK OD2 ASP A 81 CA CA A 203 1555 1555 2.78 LINK OE1BGLU A 100 CA CA A 204 1555 1555 3.05 LINK OE2BGLU A 100 CA CA A 204 1555 1555 2.94 LINK OD2 ASP A 102 CA CA A 204 1555 1555 2.43 LINK OD2 ASP A 104 CA CA A 204 1555 1555 2.19 LINK OD2 ASP A 141 CA CA A 205 1555 1555 2.36 LINK OXT ACT A 202 CA CA A 206 1555 1555 3.02 LINK CA CA A 203 O HOH A 304 1555 1555 2.37 LINK CA CA A 204 O HOH A 341 1555 1555 2.40 LINK CA CA A 205 O HOH A 303 1555 1555 2.51 SITE 1 AC1 3 TRP A 96 LYS A 108 ASP A 124 SITE 1 AC2 4 ASP A 73 LYS A 152 CA A 206 HOH A 336 SITE 1 AC3 3 ASP A 81 ASP A 146 HOH A 304 SITE 1 AC4 4 GLU A 100 ASP A 102 ASP A 104 HOH A 341 SITE 1 AC5 3 ASP A 141 ASP A 143 HOH A 303 SITE 1 AC6 1 ACT A 202 CRYST1 107.485 107.485 63.870 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009304 0.005371 0.000000 0.00000 SCALE2 0.000000 0.010743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015657 0.00000