PDB Short entry for 5CYO HEADER HYDROLASE 30-JUL-15 5CYO TITLE HIGH RESOLUTION SEPTIN 9 GTPASE DOMAIN IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEPTIN-9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MLL SEPTIN-LIKE FUSION PROTEIN MSF-A,MLL SEPTIN-LIKE FUSION COMPND 5 PROTEIN,OVARIAN/BREAST SEPTIN,OV/BR SEPTIN,SEPTIN D1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEPT9, KIAA0991, MSF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS SEPTIN 9 GTPASE DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.S.MATOS,D.A.LEONARDO,H.M.PEREIRA,E.HORJALES,A.P.U.ARAUJO, AUTHOR 2 R.C.GARRATT REVDAT 7 06-MAR-24 5CYO 1 LINK REVDAT 6 13-MAY-20 5CYO 1 JRNL REVDAT 5 22-APR-20 5CYO 1 JRNL REVDAT 4 01-JAN-20 5CYO 1 REMARK REVDAT 3 17-APR-19 5CYO 1 REMARK REVDAT 2 01-NOV-17 5CYO 1 REMARK REVDAT 1 03-AUG-16 5CYO 0 JRNL AUTH D.K.S.V.CASTRO,S.M.O.DA SILVA,H.M.PEREIRA,J.N.A.MACEDO, JRNL AUTH 2 D.A.LEONARDO,N.F.VALADARES,P.S.KUMAGAI,J.BRANDAO-NETO, JRNL AUTH 3 A.P.U.ARAUJO,R.C.GARRATT JRNL TITL A COMPLETE COMPENDIUM OF CRYSTAL STRUCTURES FOR THE HUMAN JRNL TITL 2 SEPT3 SUBGROUP REVEALS FUNCTIONAL PLASTICITY AT A SPECIFIC JRNL TITL 3 SEPTIN INTERFACE JRNL REF IUCRJ 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252520002973 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 41903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3121 - 5.0185 0.98 2697 143 0.1674 0.1991 REMARK 3 2 5.0185 - 3.9837 0.99 2681 141 0.1448 0.1820 REMARK 3 3 3.9837 - 3.4802 0.99 2659 140 0.1584 0.2057 REMARK 3 4 3.4802 - 3.1620 0.99 2662 140 0.1750 0.2139 REMARK 3 5 3.1620 - 2.9354 1.00 2683 141 0.1904 0.2491 REMARK 3 6 2.9354 - 2.7623 0.99 2637 139 0.1942 0.2624 REMARK 3 7 2.7623 - 2.6240 0.99 2669 140 0.1948 0.2077 REMARK 3 8 2.6240 - 2.5098 1.00 2668 140 0.1962 0.2777 REMARK 3 9 2.5098 - 2.4132 1.00 2668 141 0.2056 0.2532 REMARK 3 10 2.4132 - 2.3299 1.00 2691 141 0.2138 0.2828 REMARK 3 11 2.3299 - 2.2570 1.00 2628 139 0.2150 0.2839 REMARK 3 12 2.2570 - 2.1925 1.00 2652 139 0.2263 0.2614 REMARK 3 13 2.1925 - 2.1348 1.00 2651 140 0.2433 0.3141 REMARK 3 14 2.1348 - 2.0827 1.00 2682 141 0.2602 0.2747 REMARK 3 15 2.0827 - 2.0354 0.94 2479 131 0.2975 0.3022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4316 REMARK 3 ANGLE : 0.857 5858 REMARK 3 CHIRALITY : 0.035 673 REMARK 3 PLANARITY : 0.004 743 REMARK 3 DIHEDRAL : 14.480 1608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7424 -6.2780 19.9307 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.2062 REMARK 3 T33: 0.3096 T12: 0.0323 REMARK 3 T13: -0.0254 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.3475 L22: 1.6463 REMARK 3 L33: 4.7107 L12: 0.2344 REMARK 3 L13: 0.0720 L23: -0.8229 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: -0.3068 S13: 0.2396 REMARK 3 S21: 0.2446 S22: 0.0706 S23: 0.1141 REMARK 3 S31: -0.2911 S32: -0.1899 S33: -0.0367 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7909 -2.8428 21.1368 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.3272 REMARK 3 T33: 0.3246 T12: -0.0645 REMARK 3 T13: -0.0861 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 5.1142 L22: 1.9599 REMARK 3 L33: 8.0425 L12: 0.5142 REMARK 3 L13: 5.4416 L23: 0.9534 REMARK 3 S TENSOR REMARK 3 S11: -0.3775 S12: 0.0699 S13: 0.4722 REMARK 3 S21: -0.0256 S22: 0.0096 S23: -0.0455 REMARK 3 S31: -0.5466 S32: 0.5405 S33: 0.4090 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6603 -12.9314 15.4328 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.1489 REMARK 3 T33: 0.2234 T12: 0.0161 REMARK 3 T13: -0.0170 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.1250 L22: 0.9979 REMARK 3 L33: 2.9560 L12: 0.5890 REMARK 3 L13: 2.2620 L23: 0.1243 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.0015 S13: -0.0537 REMARK 3 S21: 0.1076 S22: -0.0302 S23: -0.0712 REMARK 3 S31: 0.0311 S32: 0.0959 S33: -0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2049 -27.3556 7.5464 REMARK 3 T TENSOR REMARK 3 T11: 0.3773 T22: 0.2198 REMARK 3 T33: 0.3148 T12: -0.0020 REMARK 3 T13: -0.0853 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 9.7688 L22: 1.9424 REMARK 3 L33: 1.6546 L12: -0.4696 REMARK 3 L13: 0.7086 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.3038 S12: 0.4816 S13: -1.0127 REMARK 3 S21: -0.2116 S22: 0.0278 S23: 0.1747 REMARK 3 S31: 0.8083 S32: -0.0835 S33: -0.0789 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0552 -21.5810 22.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.2567 REMARK 3 T33: 0.2522 T12: -0.0013 REMARK 3 T13: 0.0080 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 4.4096 L22: 1.7217 REMARK 3 L33: 1.3685 L12: -1.2706 REMARK 3 L13: -0.5163 L23: 0.5675 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: -0.4475 S13: -0.2533 REMARK 3 S21: 0.2407 S22: 0.1053 S23: -0.0021 REMARK 3 S31: 0.1185 S32: -0.1149 S33: -0.0896 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8324 -13.4041 25.1909 REMARK 3 T TENSOR REMARK 3 T11: 0.3135 T22: 0.2423 REMARK 3 T33: 0.2630 T12: 0.0179 REMARK 3 T13: -0.0992 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 9.4727 L22: 5.6441 REMARK 3 L33: 6.2967 L12: 0.7770 REMARK 3 L13: -1.7970 L23: -1.4735 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.4448 S13: -0.0123 REMARK 3 S21: 0.1196 S22: -0.0004 S23: -0.3938 REMARK 3 S31: -0.0569 S32: 0.2750 S33: -0.0300 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8898 -21.7485 -14.5831 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.2041 REMARK 3 T33: 0.2604 T12: -0.0591 REMARK 3 T13: -0.0353 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.8465 L22: 3.4573 REMARK 3 L33: 6.5067 L12: 1.1533 REMARK 3 L13: 1.9037 L23: -0.9312 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: 0.2885 S13: -0.3225 REMARK 3 S21: -0.2911 S22: 0.0870 S23: 0.1756 REMARK 3 S31: 0.8552 S32: -0.2377 S33: -0.1583 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6648 -11.3627 -9.2184 REMARK 3 T TENSOR REMARK 3 T11: 0.3675 T22: 0.3679 REMARK 3 T33: 0.3951 T12: -0.0300 REMARK 3 T13: 0.0176 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 7.9950 L22: 3.7478 REMARK 3 L33: 5.0654 L12: 4.7397 REMARK 3 L13: 6.2879 L23: 4.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.6259 S12: 0.6546 S13: -0.2057 REMARK 3 S21: -0.5512 S22: 0.1749 S23: -0.0011 REMARK 3 S31: -0.2920 S32: 0.5840 S33: 0.4553 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4870 -9.9185 -18.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.3329 T22: 0.2499 REMARK 3 T33: 0.2736 T12: 0.0135 REMARK 3 T13: -0.0325 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6707 L22: 0.2211 REMARK 3 L33: 8.0211 L12: -0.1476 REMARK 3 L13: -0.0082 L23: 0.7926 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.1797 S13: -0.0525 REMARK 3 S21: -0.0131 S22: 0.0229 S23: -0.0050 REMARK 3 S31: 0.1047 S32: 0.0165 S33: -0.0119 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5960 -1.0204 0.5844 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.2871 REMARK 3 T33: 0.2796 T12: 0.0337 REMARK 3 T13: -0.0202 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 5.9406 L22: 1.3480 REMARK 3 L33: 3.3684 L12: 0.4858 REMARK 3 L13: -4.0961 L23: -0.7476 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.2326 S13: -0.0355 REMARK 3 S21: 0.6190 S22: 0.0632 S23: 0.2521 REMARK 3 S31: -0.7598 S32: -0.2970 S33: 0.2111 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1337 2.0654 -17.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.6063 T22: 0.5447 REMARK 3 T33: 0.3373 T12: 0.2438 REMARK 3 T13: -0.0974 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 7.2081 L22: 4.6040 REMARK 3 L33: 4.0213 L12: -0.2447 REMARK 3 L13: 1.7713 L23: -2.7745 REMARK 3 S TENSOR REMARK 3 S11: 0.2727 S12: 0.8956 S13: 0.8868 REMARK 3 S21: -1.0585 S22: -0.0984 S23: 0.4612 REMARK 3 S31: -0.9372 S32: -0.8892 S33: 0.1889 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3662 -10.4792 -8.5109 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.5007 REMARK 3 T33: 0.3772 T12: 0.0266 REMARK 3 T13: -0.0847 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 3.2949 L22: 4.8054 REMARK 3 L33: 5.5833 L12: 1.9761 REMARK 3 L13: -1.3213 L23: -2.3859 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: 0.1078 S13: -0.0920 REMARK 3 S21: -0.5566 S22: -0.1493 S23: 0.7465 REMARK 3 S31: 0.2214 S32: -0.9784 S33: -0.2545 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6912 -11.2984 -15.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.2817 REMARK 3 T33: 0.2696 T12: 0.0031 REMARK 3 T13: -0.0535 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.7562 L22: 1.9596 REMARK 3 L33: 7.0263 L12: 1.7872 REMARK 3 L13: -3.0023 L23: -2.5032 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.3031 S13: -0.1753 REMARK 3 S21: -0.0106 S22: 0.1020 S23: 0.1018 REMARK 3 S31: 0.0412 S32: -0.8441 S33: -0.0158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.035 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.140 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1500, 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.02450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 53 REMARK 465 TRP A 245 REMARK 465 GLN B 20 REMARK 465 ILE B 48 REMARK 465 SER B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 SER B 52 REMARK 465 VAL B 53 REMARK 465 GLN B 54 REMARK 465 PRO B 55 REMARK 465 THR B 56 REMARK 465 SER B 57 REMARK 465 GLU B 58 REMARK 465 GLU B 76 REMARK 465 LYS B 77 REMARK 465 GLY B 78 REMARK 465 VAL B 79 REMARK 465 GLN B 232 REMARK 465 VAL B 233 REMARK 465 ASN B 234 REMARK 465 GLY B 235 REMARK 465 LYS B 236 REMARK 465 ARG B 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 ASP A 196 CG OD1 OD2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 PHE B 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 LEU B 211 CG CD1 CD2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 ARG B 267 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 243 O GLY A 246 2.16 REMARK 500 OG SER B 227 O GLY B 240 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 107.69 -58.34 REMARK 500 LYS A 77 -81.29 57.39 REMARK 500 ASN A 123 62.46 -102.20 REMARK 500 HIS A 145 -115.14 -98.56 REMARK 500 LEU A 265 47.73 -85.82 REMARK 500 ILE A 280 -63.57 -108.56 REMARK 500 HIS B 145 -120.23 -101.15 REMARK 500 ILE B 280 -61.83 -108.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 37 OG REMARK 620 2 THR A 64 OG1 80.6 REMARK 620 3 GDP A 301 O2B 94.4 174.3 REMARK 620 4 HOH A 413 O 86.4 81.9 95.3 REMARK 620 5 HOH A 420 O 169.0 89.2 96.0 96.3 REMARK 620 6 HOH A 423 O 88.3 93.7 88.6 173.6 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 37 OG REMARK 620 2 THR B 64 OG1 81.7 REMARK 620 3 GDP B 301 O1B 97.1 177.0 REMARK 620 4 HOH B 407 O 90.2 81.5 95.8 REMARK 620 5 HOH B 419 O 167.1 86.1 95.3 92.2 REMARK 620 6 HOH B 444 O 91.7 89.2 93.6 170.1 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YQF RELATED DB: PDB REMARK 900 GTPASE DOMAIN OF SEPTIN 9 DBREF 5CYO A 20 293 UNP Q9UHD8 SEPT9_HUMAN 183 456 DBREF 5CYO B 20 293 UNP Q9UHD8 SEPT9_HUMAN 183 456 SEQRES 1 A 274 GLN GLY PHE GLU PHE ASN ILE MET VAL VAL GLY GLN SER SEQRES 2 A 274 GLY LEU GLY LYS SER THR LEU ILE ASN THR LEU PHE LYS SEQRES 3 A 274 SER LYS ILE SER ARG LYS SER VAL GLN PRO THR SER GLU SEQRES 4 A 274 GLU ARG ILE PRO LYS THR ILE GLU ILE LYS SER ILE THR SEQRES 5 A 274 HIS ASP ILE GLU GLU LYS GLY VAL ARG MET LYS LEU THR SEQRES 6 A 274 VAL ILE ASP THR PRO GLY PHE GLY ASP HIS ILE ASN ASN SEQRES 7 A 274 GLU ASN CYS TRP GLN PRO ILE MET LYS PHE ILE ASN ASP SEQRES 8 A 274 GLN TYR GLU LYS TYR LEU GLN GLU GLU VAL ASN ILE ASN SEQRES 9 A 274 ARG LYS LYS ARG ILE PRO ASP THR ARG VAL HIS CYS CYS SEQRES 10 A 274 LEU TYR PHE ILE PRO ALA THR GLY HIS SER LEU ARG PRO SEQRES 11 A 274 LEU ASP ILE GLU PHE MET LYS ARG LEU SER LYS VAL VAL SEQRES 12 A 274 ASN ILE VAL PRO VAL ILE ALA LYS ALA ASP THR LEU THR SEQRES 13 A 274 LEU GLU GLU ARG VAL HIS PHE LYS GLN ARG ILE THR ALA SEQRES 14 A 274 ASP LEU LEU SER ASN GLY ILE ASP VAL TYR PRO GLN LYS SEQRES 15 A 274 GLU PHE ASP GLU ASP SER GLU ASP ARG LEU VAL ASN GLU SEQRES 16 A 274 LYS PHE ARG GLU MET ILE PRO PHE ALA VAL VAL GLY SER SEQRES 17 A 274 ASP HIS GLU TYR GLN VAL ASN GLY LYS ARG ILE LEU GLY SEQRES 18 A 274 ARG LYS THR LYS TRP GLY THR ILE GLU VAL GLU ASN THR SEQRES 19 A 274 THR HIS CYS GLU PHE ALA TYR LEU ARG ASP LEU LEU ILE SEQRES 20 A 274 ARG THR HIS MET GLN ASN ILE LYS ASP ILE THR SER SER SEQRES 21 A 274 ILE HIS PHE GLU ALA TYR ARG VAL LYS ARG LEU ASN GLU SEQRES 22 A 274 GLY SEQRES 1 B 274 GLN GLY PHE GLU PHE ASN ILE MET VAL VAL GLY GLN SER SEQRES 2 B 274 GLY LEU GLY LYS SER THR LEU ILE ASN THR LEU PHE LYS SEQRES 3 B 274 SER LYS ILE SER ARG LYS SER VAL GLN PRO THR SER GLU SEQRES 4 B 274 GLU ARG ILE PRO LYS THR ILE GLU ILE LYS SER ILE THR SEQRES 5 B 274 HIS ASP ILE GLU GLU LYS GLY VAL ARG MET LYS LEU THR SEQRES 6 B 274 VAL ILE ASP THR PRO GLY PHE GLY ASP HIS ILE ASN ASN SEQRES 7 B 274 GLU ASN CYS TRP GLN PRO ILE MET LYS PHE ILE ASN ASP SEQRES 8 B 274 GLN TYR GLU LYS TYR LEU GLN GLU GLU VAL ASN ILE ASN SEQRES 9 B 274 ARG LYS LYS ARG ILE PRO ASP THR ARG VAL HIS CYS CYS SEQRES 10 B 274 LEU TYR PHE ILE PRO ALA THR GLY HIS SER LEU ARG PRO SEQRES 11 B 274 LEU ASP ILE GLU PHE MET LYS ARG LEU SER LYS VAL VAL SEQRES 12 B 274 ASN ILE VAL PRO VAL ILE ALA LYS ALA ASP THR LEU THR SEQRES 13 B 274 LEU GLU GLU ARG VAL HIS PHE LYS GLN ARG ILE THR ALA SEQRES 14 B 274 ASP LEU LEU SER ASN GLY ILE ASP VAL TYR PRO GLN LYS SEQRES 15 B 274 GLU PHE ASP GLU ASP SER GLU ASP ARG LEU VAL ASN GLU SEQRES 16 B 274 LYS PHE ARG GLU MET ILE PRO PHE ALA VAL VAL GLY SER SEQRES 17 B 274 ASP HIS GLU TYR GLN VAL ASN GLY LYS ARG ILE LEU GLY SEQRES 18 B 274 ARG LYS THR LYS TRP GLY THR ILE GLU VAL GLU ASN THR SEQRES 19 B 274 THR HIS CYS GLU PHE ALA TYR LEU ARG ASP LEU LEU ILE SEQRES 20 B 274 ARG THR HIS MET GLN ASN ILE LYS ASP ILE THR SER SER SEQRES 21 B 274 ILE HIS PHE GLU ALA TYR ARG VAL LYS ARG LEU ASN GLU SEQRES 22 B 274 GLY HET GDP A 301 28 HET MG A 302 1 HET GDP B 301 28 HET MG B 302 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *233(H2 O) HELIX 1 AA1 GLY A 35 ILE A 48 1 14 HELIX 2 AA2 TRP A 101 ASN A 121 1 21 HELIX 3 AA3 ARG A 148 LYS A 160 1 13 HELIX 4 AA4 LYS A 170 LEU A 174 5 5 HELIX 5 AA5 THR A 175 ASN A 193 1 19 HELIX 6 AA6 GLN A 200 ASP A 204 5 5 HELIX 7 AA7 ASP A 206 ILE A 220 1 15 HELIX 8 AA8 GLU A 257 LEU A 265 1 9 HELIX 9 AA9 ILE A 266 ILE A 280 1 15 HELIX 10 AB1 ILE A 280 GLY A 293 1 14 HELIX 11 AB2 GLY B 35 SER B 46 1 12 HELIX 12 AB3 TRP B 101 ASN B 121 1 21 HELIX 13 AB4 ARG B 148 LYS B 160 1 13 HELIX 14 AB5 LYS B 170 LEU B 174 5 5 HELIX 15 AB6 THR B 175 ASN B 193 1 19 HELIX 16 AB7 GLN B 200 ASP B 204 5 5 HELIX 17 AB8 ASP B 206 ILE B 220 1 15 HELIX 18 AB9 GLU B 257 ARG B 267 1 11 HELIX 19 AC1 HIS B 269 ILE B 280 1 12 HELIX 20 AC2 ILE B 280 GLU B 292 1 13 SHEET 1 AA1 6 LYS A 68 GLU A 76 0 SHEET 2 AA1 6 VAL A 79 ASP A 87 -1 O ASP A 87 N LYS A 68 SHEET 3 AA1 6 PHE A 22 VAL A 29 1 N ILE A 26 O ILE A 86 SHEET 4 AA1 6 CYS A 135 ILE A 140 1 O LEU A 137 N MET A 27 SHEET 5 AA1 6 ASN A 163 ILE A 168 1 O VAL A 165 N CYS A 136 SHEET 6 AA1 6 PHE A 222 ALA A 223 1 O PHE A 222 N ILE A 168 SHEET 1 AA2 4 THR A 56 SER A 57 0 SHEET 2 AA2 4 HIS A 229 VAL A 233 -1 O GLU A 230 N THR A 56 SHEET 3 AA2 4 LYS A 236 LYS A 242 -1 O ILE A 238 N TYR A 231 SHEET 4 AA2 4 THR A 247 GLU A 249 -1 O ILE A 248 N ARG A 241 SHEET 1 AA3 6 LYS B 68 ILE B 74 0 SHEET 2 AA3 6 MET B 81 ASP B 87 -1 O MET B 81 N ILE B 74 SHEET 3 AA3 6 PHE B 22 VAL B 29 1 N PHE B 22 O LYS B 82 SHEET 4 AA3 6 CYS B 135 ILE B 140 1 O PHE B 139 N VAL B 29 SHEET 5 AA3 6 ILE B 164 ILE B 168 1 O VAL B 167 N ILE B 140 SHEET 6 AA3 6 PHE B 222 ALA B 223 1 O PHE B 222 N ILE B 168 SHEET 1 AA4 2 GLY B 240 LYS B 242 0 SHEET 2 AA4 2 THR B 247 GLU B 249 -1 O ILE B 248 N ARG B 241 LINK OG SER A 37 MG MG A 302 1555 1555 2.08 LINK OG1 THR A 64 MG MG A 302 1555 1555 2.14 LINK O2B GDP A 301 MG MG A 302 1555 1555 2.03 LINK MG MG A 302 O HOH A 413 1555 1555 2.11 LINK MG MG A 302 O HOH A 420 1555 1555 2.16 LINK MG MG A 302 O HOH A 423 1555 1555 2.17 LINK OG SER B 37 MG MG B 302 1555 1555 2.03 LINK OG1 THR B 64 MG MG B 302 1555 1555 2.20 LINK O1B GDP B 301 MG MG B 302 1555 1555 2.05 LINK MG MG B 302 O HOH B 407 1555 1555 2.08 LINK MG MG B 302 O HOH B 419 1555 1555 2.13 LINK MG MG B 302 O HOH B 444 1555 1555 2.08 CISPEP 1 TYR A 198 PRO A 199 0 -1.31 CISPEP 2 ILE A 220 PRO A 221 0 1.81 CISPEP 3 TYR B 198 PRO B 199 0 -2.38 CISPEP 4 ILE B 220 PRO B 221 0 -1.91 SITE 1 AC1 24 SER A 32 GLY A 33 LEU A 34 GLY A 35 SITE 2 AC1 24 LYS A 36 SER A 37 THR A 38 LYS A 170 SITE 3 AC1 24 ASP A 172 VAL A 225 GLY A 226 ARG A 241 SITE 4 AC1 24 MG A 302 HOH A 413 HOH A 420 HOH A 423 SITE 5 AC1 24 HOH A 428 HOH A 443 HOH A 451 HOH A 471 SITE 6 AC1 24 THR B 143 HIS B 145 THR B 173 GLU B 178 SITE 1 AC2 6 SER A 37 THR A 64 GDP A 301 HOH A 413 SITE 2 AC2 6 HOH A 420 HOH A 423 SITE 1 AC3 24 THR A 143 HIS A 145 THR A 173 GLU A 178 SITE 2 AC3 24 SER B 32 GLY B 33 LEU B 34 GLY B 35 SITE 3 AC3 24 LYS B 36 SER B 37 THR B 38 LYS B 170 SITE 4 AC3 24 ASP B 172 VAL B 225 GLY B 226 ARG B 241 SITE 5 AC3 24 MG B 302 HOH B 407 HOH B 408 HOH B 419 SITE 6 AC3 24 HOH B 442 HOH B 443 HOH B 444 HOH B 483 SITE 1 AC4 6 SER B 37 THR B 64 GDP B 301 HOH B 407 SITE 2 AC4 6 HOH B 419 HOH B 444 CRYST1 57.497 78.049 77.443 90.00 105.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017392 0.000000 0.004961 0.00000 SCALE2 0.000000 0.012812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013428 0.00000