PDB Short entry for 5CYT HEADER ELECTRON TRANSPORT (HEME PROTEIN) 14-JAN-88 5CYT TITLE REFINEMENT OF MYOGLOBIN AND CYTOCHROME C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THUNNUS ALALUNGA; SOURCE 3 ORGANISM_COMMON: ALBACORE; SOURCE 4 ORGANISM_TAXID: 8235 KEYWDS ELECTRON TRANSPORT (HEME PROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR T.TAKANO REVDAT 4 03-MAR-21 5CYT 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 ATOM REVDAT 3 29-NOV-17 5CYT 1 HELIX REVDAT 2 24-FEB-09 5CYT 1 VERSN REVDAT 1 12-JUL-89 5CYT 0 SPRSDE 12-JUL-89 5CYT 4CYT JRNL AUTH T.TAKANO JRNL TITL REFINEMENT OF MYOGLOBIN AND CYTOCHROME C JRNL EDIT S.R.HALL, T.ASHIDA JRNL REF METHODS AND APPLICATIONS IN 262 1984 JRNL REF 2 CRYSTALLOGRAPHIC COMPUTING JRNL PUBL OXFORD UNIVERSITY PRESS, OXFORD, ENGLAND JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.TAKANO,R.E.DICKERSON REMARK 1 TITL CONFORMATION CHANGE OF CYTOCHROME C. I. FERROCYTOCHROME C REMARK 1 TITL 2 STRUCTURE REFINED AT 1.5 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 153 79 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.TAKANO,R.E.DICKERSON REMARK 1 TITL CONFORMATION CHANGE OF CYTOCHROME C. II. FERRICYTOCHROME C REMARK 1 TITL 2 REFINEMENT AT 1.8 ANGSTROMS AND COMPARISON WITH THE REMARK 1 TITL 3 FERROCYTOCHROME STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 153 95 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.TAKANO,R.E.DICKERSON REMARK 1 TITL REDOX CONFORMATION CHANGES IN REFINED TUNA CYTOCHROME C REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 77 6371 1980 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.E.DICKERSON REMARK 1 TITL CYTOCHROME C AND THE EVOLUTION OF ENERGY METABOLISM REMARK 1 REF SCI.AM. V. 242 136 1980 REMARK 1 REFN ISSN 0036-8733 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.H.NORTHRUP,M.R.PEAR,J.A.MCCAMMON,M.KARPLUS,T.TAKANO REMARK 1 TITL INTERNAL MOBILITY OF FERROCYTOCHROME C REMARK 1 REF NATURE V. 287 659 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH T.TAKANO,B.L.TRUS,N.MANDEL,G.MANDEL,O.B.KALLAI,R.SWANSON, REMARK 1 AUTH 2 R.E.DICKERSON REMARK 1 TITL TUNA CYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION. II. REMARK 1 TITL 2 FERROCYTOCHROME STRUCTURE ANALYSIS REMARK 1 REF J.BIOL.CHEM. V. 252 776 1977 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 7 REMARK 1 AUTH R.SWANSON,B.L.TRUS,N.MANDEL,G.MANDEL,O.B.KALLAI, REMARK 1 AUTH 2 R.E.DICKERSON REMARK 1 TITL TUNA CYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION. I. REMARK 1 TITL 2 FERRICYTOCHROME STRUCTURE ANALYSIS REMARK 1 REF J.BIOL.CHEM. V. 252 759 1977 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 8 REMARK 1 AUTH T.TAKANO,O.B.KALLAI,R.SWANSON,R.E.DICKERSON REMARK 1 TITL THE STRUCTURE OF FERROCYTOCHROME C AT 2.45 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 248 5234 1973 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 9 REMARK 1 AUTH R.E.DICKERSON REMARK 1 TITL THE STRUCTURE AND HISTORY OF AN ANCIENT PROTEIN REMARK 1 REF SCI.AM. V. 226 58 1972 REMARK 1 REFN ISSN 0036-8733 REMARK 1 REFERENCE 10 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 39 1976 REMARK 1 REF 2 AND STRUCTURE,SUPPLEMENT 2 REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER SPRING,MD. REMARK 1 REFN ISSN 0-912466-05-7 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 18.66500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER R 54 O HOH R 177 1.35 REMARK 500 O HOH R 122 O HOH R 184 1.96 REMARK 500 OE1 GLU R 21 O HOH R 189 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS R 88 NZ LYS R 88 2555 1.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP R 33 NE1 TRP R 33 CE2 -0.091 REMARK 500 TRP R 59 NE1 TRP R 59 CE2 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG R 38 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG R 91 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG R 91 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL R 28 -49.09 -133.99 REMARK 500 ASN R 70 83.39 -161.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS R 25 -10.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH R 187 DISTANCE = 10.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC R 105 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS R 18 NE2 REMARK 620 2 HEC R 105 NA 88.2 REMARK 620 3 HEC R 105 NB 87.2 90.5 REMARK 620 4 HEC R 105 NC 92.9 178.9 89.3 REMARK 620 5 HEC R 105 ND 88.2 90.8 175.2 89.5 REMARK 620 6 MET R 80 SD 174.7 87.1 95.3 91.8 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC R 105 DBREF 5CYT R 1 103 UNP P81459 CYC_THUAA 1 103 SEQADV 5CYT ASN R 61 UNP P81459 GLU 61 CONFLICT SEQADV 5CYT ASP R 62 UNP P81459 ASN 62 CONFLICT SEQRES 1 R 104 ACE GLY ASP VAL ALA LYS GLY LYS LYS THR PHE VAL GLN SEQRES 2 R 104 LYS CYS ALA GLN CYS HIS THR VAL GLU ASN GLY GLY LYS SEQRES 3 R 104 HIS LYS VAL GLY PRO ASN LEU TRP GLY LEU PHE GLY ARG SEQRES 4 R 104 LYS THR GLY GLN ALA GLU GLY TYR SER TYR THR ASP ALA SEQRES 5 R 104 ASN LYS SER LYS GLY ILE VAL TRP ASN ASN ASP THR LEU SEQRES 6 R 104 MET GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY SEQRES 7 R 104 THR LYS MET ILE PHE ALA GLY ILE LYS LYS LYS GLY GLU SEQRES 8 R 104 ARG GLN ASP LEU VAL ALA TYR LEU LYS SER ALA THR SER HET ACE R 0 3 HET HEC R 105 43 HETNAM ACE ACETYL GROUP HETNAM HEC HEME C FORMUL 1 ACE C2 H4 O FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 HOH *91(H2 O) HELIX 1 NR ASP R 2 CYS R 14 1 13 HELIX 2 50R THR R 49 LYS R 55 1 7 HELIX 3 60R ASN R 60 GLU R 69 1 10 HELIX 4 70R GLU R 69 ILE R 75 1INCOMPLETE DUE TO PRO 76 7 HELIX 5 CR LYS R 87 THR R 102 1 16 LINK C ACE R 0 N GLY R 1 1555 1555 1.34 LINK SG CYS R 14 CAB HEC R 105 1555 1555 1.82 LINK SG CYS R 17 CAC HEC R 105 1555 1555 1.84 LINK NE2 HIS R 18 FE HEC R 105 1555 1555 1.98 LINK SD MET R 80 FE HEC R 105 1555 1555 2.31 SITE 1 AC1 22 VAL R 11 LYS R 13 CYS R 14 GLN R 16 SITE 2 AC1 22 CYS R 17 HIS R 18 GLY R 29 PRO R 30 SITE 3 AC1 22 ARG R 38 GLY R 41 TYR R 46 TYR R 48 SITE 4 AC1 22 THR R 49 ASN R 52 TRP R 59 TYR R 67 SITE 5 AC1 22 THR R 78 LYS R 79 MET R 80 PHE R 82 SITE 6 AC1 22 LEU R 94 HOH R 129 CRYST1 37.330 87.100 34.440 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029036 0.00000 HETATM 1 C ACE R 0 -4.961 -1.945 10.970 1.00 24.29 C HETATM 2 O ACE R 0 -5.903 -2.599 10.513 1.00 22.77 O HETATM 3 CH3 ACE R 0 -4.764 -0.499 10.513 1.00 20.83 C