PDB Short entry for 5D5V HEADER TRANSCRIPTION/DNA 11-AUG-15 5D5V TITLE CRYSTAL STRUCTURE OF HUMAN HSF1 WITH SATELLITE III REPEAT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK FACTOR PROTEIN 1; COMPND 3 CHAIN: B, D; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 1-120; COMPND 5 SYNONYM: HSF 1,HEAT SHOCK TRANSCRIPTION FACTOR 1,HSTF 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSF1, HSTF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HELIX-TURN-HELIX, TRANSCRIPTION- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.NEUDEGGER,J.VERGHESE,M.HAYER-HARTL,F.U.HARTL,A.BRACHER REVDAT 5 10-JAN-24 5D5V 1 REMARK REVDAT 4 10-FEB-16 5D5V 1 JRNL REVDAT 3 20-JAN-16 5D5V 1 AUTHOR REVDAT 2 13-JAN-16 5D5V 1 JRNL REVDAT 1 30-DEC-15 5D5V 0 JRNL AUTH T.NEUDEGGER,J.VERGHESE,M.HAYER-HARTL,F.U.HARTL,A.BRACHER JRNL TITL STRUCTURE OF HUMAN HEAT-SHOCK TRANSCRIPTION FACTOR 1 IN JRNL TITL 2 COMPLEX WITH DNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 140 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 26727489 JRNL DOI 10.1038/NSMB.3149 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 731 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1669 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 1879 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3152 ; 1.397 ; 1.729 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4336 ; 1.127 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 6.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;31.730 ;24.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;17.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;23.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2225 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 14 120 D 14 120 5333 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5D5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15087 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 39.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.05 REMARK 200 STARTING MODEL: 5D5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31 % PEG-4000, 0.09 M MG-ACETATE, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.40650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.33900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.40650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.33900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -10 REMARK 465 ALA B -9 REMARK 465 MET B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 LEU B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 5 REMARK 465 GLY B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 PRO B 12 REMARK 465 SER B 13 REMARK 465 ILE B 84 REMARK 465 GLU B 85 REMARK 465 GLN B 86 REMARK 465 GLY B 87 REMARK 465 GLY B 88 REMARK 465 LEU B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 PRO B 92 REMARK 465 GLU B 93 REMARK 465 ARG B 94 REMARK 465 GLY D -10 REMARK 465 ALA D -9 REMARK 465 MET D -8 REMARK 465 GLY D -7 REMARK 465 SER D -6 REMARK 465 GLY D -5 REMARK 465 ILE D -4 REMARK 465 LEU D -3 REMARK 465 ARG D -2 REMARK 465 GLY D -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 LEU D 3 REMARK 465 PRO D 4 REMARK 465 VAL D 5 REMARK 465 GLY D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 GLY D 11 REMARK 465 PRO D 12 REMARK 465 LEU D 89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 103 CB CYS D 103 SG 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 79 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 CYS B 103 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 CYS D 103 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 DT C 9 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 49 -55.80 -24.80 REMARK 500 LYS B 62 41.95 -95.69 REMARK 500 VAL B 119 -76.03 -80.21 REMARK 500 GLN D 49 -54.44 -28.44 REMARK 500 LYS D 62 39.48 -95.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 25 O REMARK 620 2 VAL B 26 O 71.8 REMARK 620 3 ASP B 28 O 93.2 94.1 REMARK 620 4 THR B 31 OG1 61.6 132.7 81.6 REMARK 620 5 ASP B 32 OD1 153.0 83.3 77.9 139.7 REMARK 620 6 ILE B 35 O 102.4 99.5 161.9 97.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU D 25 O REMARK 620 2 VAL D 26 O 77.8 REMARK 620 3 ASP D 28 O 93.0 111.4 REMARK 620 4 THR D 31 OG1 62.3 140.1 73.7 REMARK 620 5 ASP D 32 OD1 161.8 89.1 80.0 129.9 REMARK 620 6 ILE D 35 O 107.0 99.9 145.8 91.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 201 DBREF 5D5V B 1 120 UNP Q00613 HSF1_HUMAN 1 120 DBREF 5D5V D 1 120 UNP Q00613 HSF1_HUMAN 1 120 DBREF 5D5V A 1 12 PDB 5D5V 5D5V 1 12 DBREF 5D5V C 1 12 PDB 5D5V 5D5V 1 12 SEQADV 5D5V GLY B -10 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ALA B -9 UNP Q00613 EXPRESSION TAG SEQADV 5D5V MET B -8 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY B -7 UNP Q00613 EXPRESSION TAG SEQADV 5D5V SER B -6 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY B -5 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ILE B -4 UNP Q00613 EXPRESSION TAG SEQADV 5D5V LEU B -3 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ARG B -2 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY B -1 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY B 0 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY D -10 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ALA D -9 UNP Q00613 EXPRESSION TAG SEQADV 5D5V MET D -8 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY D -7 UNP Q00613 EXPRESSION TAG SEQADV 5D5V SER D -6 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY D -5 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ILE D -4 UNP Q00613 EXPRESSION TAG SEQADV 5D5V LEU D -3 UNP Q00613 EXPRESSION TAG SEQADV 5D5V ARG D -2 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY D -1 UNP Q00613 EXPRESSION TAG SEQADV 5D5V GLY D 0 UNP Q00613 EXPRESSION TAG SEQRES 1 B 131 GLY ALA MET GLY SER GLY ILE LEU ARG GLY GLY MET ASP SEQRES 2 B 131 LEU PRO VAL GLY PRO GLY ALA ALA GLY PRO SER ASN VAL SEQRES 3 B 131 PRO ALA PHE LEU THR LYS LEU TRP THR LEU VAL SER ASP SEQRES 4 B 131 PRO ASP THR ASP ALA LEU ILE CYS TRP SER PRO SER GLY SEQRES 5 B 131 ASN SER PHE HIS VAL PHE ASP GLN GLY GLN PHE ALA LYS SEQRES 6 B 131 GLU VAL LEU PRO LYS TYR PHE LYS HIS ASN ASN MET ALA SEQRES 7 B 131 SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE ARG LYS SEQRES 8 B 131 VAL VAL HIS ILE GLU GLN GLY GLY LEU VAL LYS PRO GLU SEQRES 9 B 131 ARG ASP ASP THR GLU PHE GLN HIS PRO CYS PHE LEU ARG SEQRES 10 B 131 GLY GLN GLU GLN LEU LEU GLU ASN ILE LYS ARG LYS VAL SEQRES 11 B 131 THR SEQRES 1 D 131 GLY ALA MET GLY SER GLY ILE LEU ARG GLY GLY MET ASP SEQRES 2 D 131 LEU PRO VAL GLY PRO GLY ALA ALA GLY PRO SER ASN VAL SEQRES 3 D 131 PRO ALA PHE LEU THR LYS LEU TRP THR LEU VAL SER ASP SEQRES 4 D 131 PRO ASP THR ASP ALA LEU ILE CYS TRP SER PRO SER GLY SEQRES 5 D 131 ASN SER PHE HIS VAL PHE ASP GLN GLY GLN PHE ALA LYS SEQRES 6 D 131 GLU VAL LEU PRO LYS TYR PHE LYS HIS ASN ASN MET ALA SEQRES 7 D 131 SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE ARG LYS SEQRES 8 D 131 VAL VAL HIS ILE GLU GLN GLY GLY LEU VAL LYS PRO GLU SEQRES 9 D 131 ARG ASP ASP THR GLU PHE GLN HIS PRO CYS PHE LEU ARG SEQRES 10 D 131 GLY GLN GLU GLN LEU LEU GLU ASN ILE LYS ARG LYS VAL SEQRES 11 D 131 THR SEQRES 1 A 12 DC DG DG DA DA DT DG DG DA DA DT DG SEQRES 1 C 12 DC DA DT DT DC DC DA DT DT DC DC DG HET MG B 201 1 HET MG D 201 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 PRO B 16 ASP B 28 1 13 HELIX 2 AA2 PRO B 29 ASP B 32 5 4 HELIX 3 AA3 ASP B 48 VAL B 56 1 9 HELIX 4 AA4 VAL B 56 PHE B 61 1 6 HELIX 5 AA5 ASN B 65 TYR B 76 1 12 HELIX 6 AA6 GLN B 108 ILE B 115 5 8 HELIX 7 AA7 PRO D 16 ASP D 28 1 13 HELIX 8 AA8 PRO D 29 ASP D 32 5 4 HELIX 9 AA9 ASP D 48 VAL D 56 1 9 HELIX 10 AB1 VAL D 56 PHE D 61 1 6 HELIX 11 AB2 ASN D 65 TYR D 76 1 12 HELIX 12 AB3 GLN D 108 ILE D 115 5 8 SHEET 1 AA1 4 ILE B 35 TRP B 37 0 SHEET 2 AA1 4 PHE B 44 PHE B 47 -1 O HIS B 45 N CYS B 36 SHEET 3 AA1 4 ASP B 96 GLN B 100 -1 O THR B 97 N VAL B 46 SHEET 4 AA1 4 ARG B 79 VAL B 81 -1 N VAL B 81 O GLU B 98 SHEET 1 AA2 4 ILE D 35 TRP D 37 0 SHEET 2 AA2 4 PHE D 44 PHE D 47 -1 O HIS D 45 N CYS D 36 SHEET 3 AA2 4 ASP D 96 GLN D 100 -1 O PHE D 99 N PHE D 44 SHEET 4 AA2 4 ARG D 79 VAL D 81 -1 N VAL D 81 O GLU D 98 LINK O LEU B 25 MG MG B 201 1555 1555 2.94 LINK O VAL B 26 MG MG B 201 1555 1555 2.60 LINK O ASP B 28 MG MG B 201 1555 1555 2.27 LINK OG1 THR B 31 MG MG B 201 1555 1555 2.36 LINK OD1 ASP B 32 MG MG B 201 1555 1555 2.30 LINK O ILE B 35 MG MG B 201 1555 1555 2.32 LINK O LEU D 25 MG MG D 201 1555 1555 2.82 LINK O VAL D 26 MG MG D 201 1555 1555 2.43 LINK O ASP D 28 MG MG D 201 1555 1555 2.52 LINK OG1 THR D 31 MG MG D 201 1555 1555 2.45 LINK OD1 ASP D 32 MG MG D 201 1555 1555 2.36 LINK O ILE D 35 MG MG D 201 1555 1555 2.40 SITE 1 AC1 6 LEU B 25 VAL B 26 ASP B 28 THR B 31 SITE 2 AC1 6 ASP B 32 ILE B 35 SITE 1 AC2 6 LEU D 25 VAL D 26 ASP D 28 THR D 31 SITE 2 AC2 6 ASP D 32 ILE D 35 CRYST1 104.813 112.678 39.865 90.00 92.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009541 0.000000 0.000426 0.00000 SCALE2 0.000000 0.008875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025110 0.00000