PDB Short entry for 5D8L HEADER TRANSCRIPTION/DNA 17-AUG-15 5D8L TITLE HUMAN HSF2 DNA BINDING DOMAIN IN COMPLEX WITH 3-SITE HSE DNA AT 2.1 TITLE 2 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*TP*GP*AP*AP*TP*AP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3'); COMPND 4 CHAIN: A, G; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAT SHOCK FACTOR PROTEIN 2; COMPND 8 CHAIN: B, D, F, H; COMPND 9 SYNONYM: HSF 2,HEAT SHOCK TRANSCRIPTION FACTOR 2,HSTF 2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*TP*AP*TP*TP*CP*AP*C)-3'); COMPND 14 CHAIN: C, E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: HSF2, HSTF2; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, DNA, HSF, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.JAEGER,C.W.PEMBLE,D.J.THIELE REVDAT 5 06-MAR-24 5D8L 1 REMARK REVDAT 4 27-SEP-17 5D8L 1 REMARK REVDAT 3 10-FEB-16 5D8L 1 JRNL REVDAT 2 03-FEB-16 5D8L 1 JRNL REVDAT 1 06-JAN-16 5D8L 0 JRNL AUTH A.M.JAEGER,C.W.PEMBLE,L.SISTONEN,D.J.THIELE JRNL TITL STRUCTURES OF HSF2 REVEAL MECHANISMS FOR DIFFERENTIAL JRNL TITL 2 REGULATION OF HUMAN HEAT-SHOCK FACTORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 147 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 26727490 JRNL DOI 10.1038/NSMB.3150 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1675 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 38940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4172 - 4.9729 0.98 2915 159 0.1503 0.1801 REMARK 3 2 4.9729 - 3.9526 0.98 2902 159 0.1510 0.1963 REMARK 3 3 3.9526 - 3.4545 0.97 2927 153 0.1809 0.2783 REMARK 3 4 3.4545 - 3.1394 0.94 2782 144 0.2142 0.2936 REMARK 3 5 3.1394 - 2.9147 0.96 2876 157 0.2523 0.3168 REMARK 3 6 2.9147 - 2.7431 0.95 2823 154 0.2546 0.2706 REMARK 3 7 2.7431 - 2.6059 0.94 2794 153 0.2535 0.3294 REMARK 3 8 2.6059 - 2.4926 0.92 2706 145 0.2594 0.3216 REMARK 3 9 2.4926 - 2.3967 0.92 2768 147 0.2550 0.3346 REMARK 3 10 2.3967 - 2.3141 0.92 2754 145 0.2790 0.3233 REMARK 3 11 2.3141 - 2.2418 0.89 2594 143 0.3383 0.3984 REMARK 3 12 2.2418 - 2.1777 0.91 2765 149 0.3265 0.3436 REMARK 3 13 2.1777 - 2.1204 0.85 2494 134 0.3474 0.4350 REMARK 3 14 2.1204 - 2.0687 0.28 851 47 0.3982 0.3650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5097 REMARK 3 ANGLE : 1.486 7162 REMARK 3 CHIRALITY : 0.069 760 REMARK 3 PLANARITY : 0.008 684 REMARK 3 DIHEDRAL : 23.626 1984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.069 REMARK 200 RESOLUTION RANGE LOW (A) : 24.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML PROTEIN:DNA COMPLEXES WERE REMARK 280 MIXED AT A RATIO OF 1:1.2 PROTEIN:DNA IN 25 MM HEPES PH 7.5 AND REMARK 280 150 MM NACL AND CRYSTALLIZED AGAINST 170 MM AMMONIUM ACETATE, 85 REMARK 280 MM SODIUM ACETATE PH 4.6, 25.5% PEG 4000, AND 15% GLYCEROL. REMARK 280 CRYSTALS GREW IN 3-4 DAYS, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 112 REMARK 465 SER B 113 REMARK 465 SER B 114 REMARK 465 LYS B 115 REMARK 465 ASP D 77 REMARK 465 SER D 78 REMARK 465 GLY D 79 REMARK 465 ILE D 80 REMARK 465 VAL D 81 REMARK 465 LYS D 82 REMARK 465 GLN D 83 REMARK 465 GLU D 84 REMARK 465 ARG D 85 REMARK 465 SER D 112 REMARK 465 SER D 113 REMARK 465 SER D 114 REMARK 465 LYS D 115 REMARK 465 SER F 78 REMARK 465 GLY F 79 REMARK 465 ILE F 80 REMARK 465 VAL F 81 REMARK 465 LYS F 82 REMARK 465 GLN F 83 REMARK 465 GLU F 84 REMARK 465 ARG F 85 REMARK 465 SER F 112 REMARK 465 SER F 113 REMARK 465 SER F 114 REMARK 465 LYS F 115 REMARK 465 SER H 112 REMARK 465 SER H 113 REMARK 465 SER H 114 REMARK 465 LYS H 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 35 OE2 GLU B 90 1.54 REMARK 500 OP2 DT C 4 HG SER D 60 1.56 REMARK 500 OP2 DA C 10 O HOH C 101 1.83 REMARK 500 OP2 DA E 10 O HOH E 101 2.09 REMARK 500 O HOH H 238 O HOH H 240 2.11 REMARK 500 OE1 GLN H 92 O HOH H 201 2.11 REMARK 500 O3' DA C 10 O HOH C 102 2.12 REMARK 500 OP2 DA C 9 O HOH C 103 2.15 REMARK 500 O ASP D 86 O HOH D 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 240 O HOH D 243 1465 2.15 REMARK 500 O HOH B 224 O HOH C 126 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 2 O3' DG C 2 C3' -0.041 REMARK 500 DA G 7 O3' DA G 7 C3' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 14 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 ARG H 85 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 54 36.72 -90.46 REMARK 500 ILE B 76 -160.34 47.37 REMARK 500 SER B 78 -1.49 54.26 REMARK 500 GLN B 83 -27.89 74.22 REMARK 500 GLN B 100 54.16 -141.65 REMARK 500 HIS D 75 110.90 68.76 REMARK 500 PRO D 88 162.63 -38.80 REMARK 500 LYS F 54 36.29 -94.77 REMARK 500 HIS F 75 -178.12 67.11 REMARK 500 GLN F 100 59.60 -142.74 REMARK 500 LYS H 54 35.62 -96.24 REMARK 500 ASP H 77 92.64 -60.36 REMARK 500 ARG H 85 -42.89 77.86 REMARK 500 ASP H 86 64.59 -108.81 REMARK 500 GLN H 100 56.27 -146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D8K RELATED DB: PDB REMARK 900 SAME PROTEIN WITH 2-SITE HSE DBREF 5D8L A 1 17 PDB 5D8L 5D8L 1 17 DBREF 5D8L B 8 115 UNP Q03933 HSF2_HUMAN 8 115 DBREF 5D8L C 1 17 PDB 5D8L 5D8L 1 17 DBREF 5D8L D 8 115 UNP Q03933 HSF2_HUMAN 8 115 DBREF 5D8L E 1 17 PDB 5D8L 5D8L 1 17 DBREF 5D8L F 8 115 UNP Q03933 HSF2_HUMAN 8 115 DBREF 5D8L G 1 17 PDB 5D8L 5D8L 1 17 DBREF 5D8L H 8 115 UNP Q03933 HSF2_HUMAN 8 115 SEQADV 5D8L HIS B 6 UNP Q03933 EXPRESSION TAG SEQADV 5D8L MET B 7 UNP Q03933 EXPRESSION TAG SEQADV 5D8L HIS D 6 UNP Q03933 EXPRESSION TAG SEQADV 5D8L MET D 7 UNP Q03933 EXPRESSION TAG SEQADV 5D8L HIS F 6 UNP Q03933 EXPRESSION TAG SEQADV 5D8L MET F 7 UNP Q03933 EXPRESSION TAG SEQADV 5D8L HIS H 6 UNP Q03933 EXPRESSION TAG SEQADV 5D8L MET H 7 UNP Q03933 EXPRESSION TAG SEQRES 1 A 17 DG DT DG DA DA DT DA DT DT DC DT DA DG SEQRES 2 A 17 DA DA DC DC SEQRES 1 B 110 HIS MET PRO ALA PHE LEU SER LYS LEU TRP THR LEU VAL SEQRES 2 B 110 GLU GLU THR HIS THR ASN GLU PHE ILE THR TRP SER GLN SEQRES 3 B 110 ASN GLY GLN SER PHE LEU VAL LEU ASP GLU GLN ARG PHE SEQRES 4 B 110 ALA LYS GLU ILE LEU PRO LYS TYR PHE LYS HIS ASN ASN SEQRES 5 B 110 MET ALA SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE SEQRES 6 B 110 ARG LYS VAL VAL HIS ILE ASP SER GLY ILE VAL LYS GLN SEQRES 7 B 110 GLU ARG ASP GLY PRO VAL GLU PHE GLN HIS PRO TYR PHE SEQRES 8 B 110 LYS GLN GLY GLN ASP ASP LEU LEU GLU ASN ILE LYS ARG SEQRES 9 B 110 LYS VAL SER SER SER LYS SEQRES 1 C 17 DG DG DT DT DC DT DA DG DA DA DT DA DT SEQRES 2 C 17 DT DC DA DC SEQRES 1 D 110 HIS MET PRO ALA PHE LEU SER LYS LEU TRP THR LEU VAL SEQRES 2 D 110 GLU GLU THR HIS THR ASN GLU PHE ILE THR TRP SER GLN SEQRES 3 D 110 ASN GLY GLN SER PHE LEU VAL LEU ASP GLU GLN ARG PHE SEQRES 4 D 110 ALA LYS GLU ILE LEU PRO LYS TYR PHE LYS HIS ASN ASN SEQRES 5 D 110 MET ALA SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE SEQRES 6 D 110 ARG LYS VAL VAL HIS ILE ASP SER GLY ILE VAL LYS GLN SEQRES 7 D 110 GLU ARG ASP GLY PRO VAL GLU PHE GLN HIS PRO TYR PHE SEQRES 8 D 110 LYS GLN GLY GLN ASP ASP LEU LEU GLU ASN ILE LYS ARG SEQRES 9 D 110 LYS VAL SER SER SER LYS SEQRES 1 E 17 DG DG DT DT DC DT DA DG DA DA DT DA DT SEQRES 2 E 17 DT DC DA DC SEQRES 1 F 110 HIS MET PRO ALA PHE LEU SER LYS LEU TRP THR LEU VAL SEQRES 2 F 110 GLU GLU THR HIS THR ASN GLU PHE ILE THR TRP SER GLN SEQRES 3 F 110 ASN GLY GLN SER PHE LEU VAL LEU ASP GLU GLN ARG PHE SEQRES 4 F 110 ALA LYS GLU ILE LEU PRO LYS TYR PHE LYS HIS ASN ASN SEQRES 5 F 110 MET ALA SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE SEQRES 6 F 110 ARG LYS VAL VAL HIS ILE ASP SER GLY ILE VAL LYS GLN SEQRES 7 F 110 GLU ARG ASP GLY PRO VAL GLU PHE GLN HIS PRO TYR PHE SEQRES 8 F 110 LYS GLN GLY GLN ASP ASP LEU LEU GLU ASN ILE LYS ARG SEQRES 9 F 110 LYS VAL SER SER SER LYS SEQRES 1 G 17 DG DT DG DA DA DT DA DT DT DC DT DA DG SEQRES 2 G 17 DA DA DC DC SEQRES 1 H 110 HIS MET PRO ALA PHE LEU SER LYS LEU TRP THR LEU VAL SEQRES 2 H 110 GLU GLU THR HIS THR ASN GLU PHE ILE THR TRP SER GLN SEQRES 3 H 110 ASN GLY GLN SER PHE LEU VAL LEU ASP GLU GLN ARG PHE SEQRES 4 H 110 ALA LYS GLU ILE LEU PRO LYS TYR PHE LYS HIS ASN ASN SEQRES 5 H 110 MET ALA SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE SEQRES 6 H 110 ARG LYS VAL VAL HIS ILE ASP SER GLY ILE VAL LYS GLN SEQRES 7 H 110 GLU ARG ASP GLY PRO VAL GLU PHE GLN HIS PRO TYR PHE SEQRES 8 H 110 LYS GLN GLY GLN ASP ASP LEU LEU GLU ASN ILE LYS ARG SEQRES 9 H 110 LYS VAL SER SER SER LYS FORMUL 9 HOH *302(H2 O) HELIX 1 AA1 PRO B 8 GLU B 20 1 13 HELIX 2 AA2 THR B 21 ASN B 24 5 4 HELIX 3 AA3 ASP B 40 ILE B 48 1 9 HELIX 4 AA4 ILE B 48 PHE B 53 1 6 HELIX 5 AA5 ASN B 57 TYR B 68 1 12 HELIX 6 AA6 GLN B 100 ILE B 107 5 8 HELIX 7 AA7 PRO D 8 GLU D 20 1 13 HELIX 8 AA8 THR D 21 ASN D 24 5 4 HELIX 9 AA9 ASP D 40 ILE D 48 1 9 HELIX 10 AB1 ILE D 48 PHE D 53 1 6 HELIX 11 AB2 ASN D 57 TYR D 68 1 12 HELIX 12 AB3 GLN D 100 ILE D 107 5 8 HELIX 13 AB4 PRO F 8 GLU F 20 1 13 HELIX 14 AB5 THR F 21 ASN F 24 5 4 HELIX 15 AB6 ASP F 40 ILE F 48 1 9 HELIX 16 AB7 LEU F 49 TYR F 52 5 4 HELIX 17 AB8 ASN F 57 TYR F 68 1 12 HELIX 18 AB9 GLN F 100 ILE F 107 5 8 HELIX 19 AC1 PRO H 8 GLU H 20 1 13 HELIX 20 AC2 THR H 21 ASN H 24 5 4 HELIX 21 AC3 ASP H 40 ILE H 48 1 9 HELIX 22 AC4 LEU H 49 TYR H 52 5 4 HELIX 23 AC5 ASN H 57 TYR H 68 1 12 HELIX 24 AC6 GLN H 100 ILE H 107 5 8 SHEET 1 AA1 4 ILE B 27 TRP B 29 0 SHEET 2 AA1 4 PHE B 36 VAL B 38 -1 O LEU B 37 N THR B 28 SHEET 3 AA1 4 VAL B 89 GLN B 92 -1 O VAL B 89 N VAL B 38 SHEET 4 AA1 4 ARG B 71 LYS B 72 -1 N ARG B 71 O GLN B 92 SHEET 1 AA2 4 ILE D 27 TRP D 29 0 SHEET 2 AA2 4 PHE D 36 VAL D 38 -1 O LEU D 37 N THR D 28 SHEET 3 AA2 4 VAL D 89 GLN D 92 -1 O VAL D 89 N VAL D 38 SHEET 4 AA2 4 ARG D 71 LYS D 72 -1 N ARG D 71 O GLN D 92 SHEET 1 AA3 4 ILE F 27 TRP F 29 0 SHEET 2 AA3 4 PHE F 36 VAL F 38 -1 O LEU F 37 N THR F 28 SHEET 3 AA3 4 VAL F 89 GLN F 92 -1 O VAL F 89 N VAL F 38 SHEET 4 AA3 4 ARG F 71 LYS F 72 -1 N ARG F 71 O GLN F 92 SHEET 1 AA4 4 ILE H 27 TRP H 29 0 SHEET 2 AA4 4 PHE H 36 VAL H 38 -1 O LEU H 37 N THR H 28 SHEET 3 AA4 4 VAL H 89 GLN H 92 -1 O VAL H 89 N VAL H 38 SHEET 4 AA4 4 ARG H 71 LYS H 72 -1 N ARG H 71 O GLN H 92 CISPEP 1 LYS B 82 GLN B 83 0 11.87 CISPEP 2 GLY B 87 PRO B 88 0 -20.76 CISPEP 3 ILE F 76 ASP F 77 0 -5.19 CISPEP 4 ASP F 86 GLY F 87 0 -3.37 CRYST1 40.174 47.140 109.587 82.82 90.03 64.75 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024892 -0.011740 0.001654 0.00000 SCALE2 0.000000 0.023454 -0.003279 0.00000 SCALE3 0.000000 0.000000 0.009214 0.00000