PDB Short entry for 5D8V HEADER METAL BINDING PROTEIN 18-AUG-15 5D8V TITLE ULTRA-HIGH RESOLUTION STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH-POTENTIAL IRON-SULFUR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIPIP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHROMATIUM TEPIDUM; SOURCE 3 ORGANISM_TAXID: 1050 KEYWDS IRON-SULFUR PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,K.TAKEDA,K.MIKI REVDAT 5 08-NOV-23 5D8V 1 REMARK REVDAT 4 19-FEB-20 5D8V 1 REMARK REVDAT 3 22-FEB-17 5D8V 1 JRNL REVDAT 2 15-JUN-16 5D8V 1 JRNL REVDAT 1 25-MAY-16 5D8V 0 JRNL AUTH Y.HIRANO,K.TAKEDA,K.MIKI JRNL TITL CHARGE-DENSITY ANALYSIS OF AN IRON-SULFUR PROTEIN AT AN JRNL TITL 2 ULTRA-HIGH RESOLUTION OF 0.48 ANGSTROM JRNL REF NATURE V. 534 281 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27279229 JRNL DOI 10.1038/NATURE18001 REMARK 2 REMARK 2 RESOLUTION. 0.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MOPRO 11.10 REMARK 3 AUTHORS : GUILLOT,VIRY,GUILLOT,LECOMTE,JELSCH REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 301119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.072 REMARK 3 FREE R VALUE : 0.078 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.45086 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) LIQUID REMARK 200 -NITROGEN-COOLED REMARK 200 OPTICS : FIBER-OPTIC TAPER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 301119 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.480 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 61.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3A39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 -CITRATE, 5 MM DTT, PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.23900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.71800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.45250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 11.71800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.23900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.45250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 32 C ARG A 33 N -0.139 REMARK 500 PRO A 37 N PRO A 37 CA 0.132 REMARK 500 GLU A 39 CD GLU A 39 OE2 0.083 REMARK 500 GLU A 55 CD GLU A 55 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 1 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 33 CA - CB - CG ANGL. DEV. = 24.0 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 PRO A 37 C - N - CA ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO A 37 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO A 37 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 37 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO A 37 N - CD - CG ANGL. DEV. = -11.5 DEGREES REMARK 500 PRO A 37 N - CD - CG ANGL. DEV. = 11.9 DEGREES REMARK 500 ASN A 52 CB - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 ASN A 52 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 ASN A 52 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 VAL A 53 C - N - CA ANGL. DEV. = -24.4 DEGREES REMARK 500 VAL A 53 CA - CB - CG1 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLY A 54 O - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 55 OE1 - CD - OE2 ANGL. DEV. = 9.3 DEGREES REMARK 500 GLU A 55 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 LYS A 59 CD - CE - NZ ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 48.40 -109.32 REMARK 500 PRO A 37 125.61 -37.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 185 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 188 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 234 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 264 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 269 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 84 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 SF4 A 84 S2 113.5 REMARK 620 3 SF4 A 84 S3 116.0 105.5 REMARK 620 4 SF4 A 84 S4 111.6 104.4 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 84 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 SF4 A 84 S1 114.6 REMARK 620 3 SF4 A 84 S3 115.4 104.7 REMARK 620 4 SF4 A 84 S4 110.8 105.3 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 84 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 SF4 A 84 S1 105.2 REMARK 620 3 SF4 A 84 S2 119.2 105.5 REMARK 620 4 SF4 A 84 S4 117.6 104.4 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 84 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 75 SG REMARK 620 2 SF4 A 84 S1 105.0 REMARK 620 3 SF4 A 84 S2 109.4 106.4 REMARK 620 4 SF4 A 84 S3 126.5 103.3 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 85 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 86 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 87 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 88 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 89 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 90 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 92 DBREF 5D8V A 1 83 UNP P80176 HIP_THETI 1 83 SEQRES 1 A 83 ALA ALA PRO ALA ASN ALA VAL THR ALA ASP ASP PRO THR SEQRES 2 A 83 ALA ILE ALA LEU LYS TYR ASN GLN ASP ALA THR LYS SER SEQRES 3 A 83 GLU ARG VAL ALA ALA ALA ARG PRO GLY LEU PRO PRO GLU SEQRES 4 A 83 GLU GLN HIS CYS ALA ASN CYS GLN PHE MET GLN ALA ASN SEQRES 5 A 83 VAL GLY GLU GLY ASP TRP LYS GLY CYS GLN LEU PHE PRO SEQRES 6 A 83 GLY LYS LEU ILE ASN VAL ASN GLY TRP CYS ALA SER TRP SEQRES 7 A 83 THR LEU LYS ALA GLY HET SF4 A 84 8 HET SO4 A 85 10 HET SO4 A 86 10 HET SO4 A 87 5 HET SO4 A 88 10 HET SO4 A 89 5 HET GOL A 90 12 HET GOL A 91 6 HET GOL A 92 6 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SF4 FE4 S4 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *180(H2 O) HELIX 1 AA1 ASP A 11 LYS A 18 1 8 HELIX 2 AA2 ASP A 22 SER A 26 5 5 HELIX 3 AA3 GLU A 27 ALA A 32 1 6 HELIX 4 AA4 PRO A 37 GLN A 41 5 5 HELIX 5 AA5 HIS A 42 CYS A 46 5 5 SHEET 1 AA1 3 MET A 49 GLU A 55 0 SHEET 2 AA1 3 TRP A 58 CYS A 61 -1 O GLY A 60 N GLN A 50 SHEET 3 AA1 3 ILE A 69 ASN A 70 -1 O ILE A 69 N LYS A 59 LINK SG CYS A 43 FE1 SF4 A 84 1555 1555 2.26 LINK SG CYS A 46 FE2 SF4 A 84 1555 1555 2.28 LINK SG CYS A 61 FE3 SF4 A 84 1555 1555 2.26 LINK SG CYS A 75 FE4 SF4 A 84 1555 1555 2.27 SITE 1 AC1 6 TYR A 19 CYS A 43 CYS A 46 CYS A 61 SITE 2 AC1 6 LEU A 63 CYS A 75 SITE 1 AC2 12 LYS A 18 GLY A 54 GLU A 55 GLY A 56 SITE 2 AC2 12 LYS A 59 GOL A 92 HOH A 159 HOH A 169 SITE 3 AC2 12 HOH A 194 HOH A 240 HOH A 252 HOH A 268 SITE 1 AC3 11 HIS A 42 GLN A 50 GLN A 62 GOL A 90 SITE 2 AC3 11 HOH A 117 HOH A 136 HOH A 169 HOH A 200 SITE 3 AC3 11 HOH A 220 HOH A 242 HOH A 256 SITE 1 AC4 9 GLN A 50 ALA A 51 ASN A 52 GOL A 92 SITE 2 AC4 9 HOH A 178 HOH A 180 HOH A 190 HOH A 193 SITE 3 AC4 9 HOH A 202 SITE 1 AC5 11 ALA A 6 VAL A 7 THR A 8 ASP A 11 SITE 2 AC5 11 LYS A 25 LYS A 67 HOH A 104 HOH A 176 SITE 3 AC5 11 HOH A 229 HOH A 246 HOH A 272 SITE 1 AC6 13 ALA A 1 ALA A 2 HOH A 160 HOH A 161 SITE 2 AC6 13 HOH A 191 HOH A 204 HOH A 209 HOH A 224 SITE 3 AC6 13 HOH A 229 HOH A 246 HOH A 265 HOH A 267 SITE 4 AC6 13 HOH A 272 SITE 1 AC7 9 LYS A 18 GLU A 27 GLU A 40 ASN A 45 SITE 2 AC7 9 GLN A 62 SO4 A 86 GOL A 91 HOH A 111 SITE 3 AC7 9 HOH A 149 SITE 1 AC8 15 ILE A 15 GLN A 47 GLN A 50 GLN A 62 SITE 2 AC8 15 GOL A 90 GOL A 92 HOH A 169 HOH A 175 SITE 3 AC8 15 HOH A 180 HOH A 213 HOH A 228 HOH A 243 SITE 4 AC8 15 HOH A 259 HOH A 261 HOH A 266 SITE 1 AC9 14 GLN A 50 ALA A 51 ASN A 52 VAL A 53 SITE 2 AC9 14 LYS A 59 SO4 A 85 SO4 A 87 GOL A 91 SITE 3 AC9 14 HOH A 154 HOH A 169 HOH A 200 HOH A 202 SITE 4 AC9 14 HOH A 240 HOH A 261 CRYST1 46.478 58.905 23.436 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.042669 0.00000