PDB Short entry for 5D9I
HEADER    REPLICATION/DNA                         18-AUG-15   5D9I              
TITLE     SV40 LARGE T ANTIGEN ORIGIN BINDING DOMAIN BOUND TO ARTIFICIAL DNA    
TITLE    2 FORK                                                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LARGE T ANTIGEN;                                           
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: UNP RESIDUES 131-260;                                      
COMPND   5 SYNONYM: LT-AG;                                                      
COMPND   6 EC: 3.6.4.-;                                                         
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-                                                   
COMPND  10 D(*GP*AP*GP*GP*AP*GP*GP*CP*TP*TP*TP*TP*TP*TP*GP*GP*AP*GP*GP*CP*C)-   
COMPND  11 3');                                                                 
COMPND  12 CHAIN: X;                                                            
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 MOL_ID: 3;                                                           
COMPND  15 MOLECULE: DNA (5'-                                                   
COMPND  16 D(*AP*CP*TP*CP*CP*TP*CP*CP*GP*AP*AP*AP*AP*AP*AP*CP*CP*TP*CP*CP*GP*GP*
COMPND  17 A)-3');                                                              
COMPND  18 CHAIN: Y;                                                            
COMPND  19 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40;                                
SOURCE   3 ORGANISM_COMMON: SV40;                                               
SOURCE   4 ORGANISM_TAXID: 10633;                                               
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PGEX-1LAMBDAT;                            
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  11 ORGANISM_TAXID: 32630;                                               
SOURCE  12 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT;                              
SOURCE  13 EXPRESSION_SYSTEM_TAXID: 32630;                                      
SOURCE  14 MOL_ID: 3;                                                           
SOURCE  15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  16 ORGANISM_TAXID: 32630;                                               
SOURCE  17 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT;                              
SOURCE  18 EXPRESSION_SYSTEM_TAXID: 32630                                       
KEYWDS    ORIGIN BINDING DOMAIN, REPLICATION, SV40, REPLICATION-DNA COMPLEX     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    G.MEINKE,A.BOHM,P.A.BULLOCK                                           
REVDAT   3   25-DEC-19 5D9I    1       REMARK                                   
REVDAT   2   20-SEP-17 5D9I    1       REMARK                                   
REVDAT   1   09-SEP-15 5D9I    0                                                
JRNL        AUTH   G.MEINKE,P.J.PHELAN,A.FRADET-TURCOTTE,A.BOHM,J.ARCHAMBAULT,  
JRNL        AUTH 2 P.A.BULLOCK                                                  
JRNL        TITL   STRUCTURE-BASED ANALYSIS OF THE INTERACTION BETWEEN THE      
JRNL        TITL 2 SIMIAN VIRUS 40 T-ANTIGEN ORIGIN BINDING DOMAIN AND          
JRNL        TITL 3 SINGLE-STRANDED DNA.                                         
JRNL        REF    J. VIROL.                     V.  85   818 2011              
JRNL        REFN                   ESSN 1098-5514                               
JRNL        PMID   20980496                                                     
JRNL        DOI    10.1128/JVI.01738-10                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.70 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0129                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 88.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 35570                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.182                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.223                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1895                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.70                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.74                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1541                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 51.90                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2240                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 72                           
REMARK   3   BIN FREE R VALUE                    : 0.2710                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2162                                    
REMARK   3   NUCLEIC ACID ATOMS       : 896                                     
REMARK   3   HETEROGEN ATOMS          : 14                                      
REMARK   3   SOLVENT ATOMS            : 230                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 35.15                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.89000                                              
REMARK   3    B22 (A**2) : -0.66000                                             
REMARK   3    B33 (A**2) : -1.13000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -1.15000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.126         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.123         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.098         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.940         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.965                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.945                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3314 ; 0.017 ; 0.017       
REMARK   3   BOND LENGTHS OTHERS               (A):  2644 ; 0.006 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4678 ; 1.709 ; 1.694       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  6145 ; 1.479 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   285 ; 6.625 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   107 ;28.799 ;23.458       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   389 ;12.164 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    10 ;12.281 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   469 ; 0.110 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3144 ; 0.012 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   795 ; 0.004 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1105 ; 1.859 ; 1.425       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1103 ; 1.855 ; 1.423       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1392 ; 2.483 ; 2.126       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  1393 ; 2.485 ; 2.127       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2209 ; 2.744 ; 1.784       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  2209 ; 2.743 ; 1.784       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  3284 ; 4.097 ; 2.606       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  4077 ; 6.652 ;13.860       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  4011 ; 6.606 ;13.568       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NCS TYPE: LOCAL                                                    
REMARK   3   NUMBER OF DIFFERENT NCS PAIRS  : 1                                 
REMARK   3  GROUP  CHAIN1    RANGE     CHAIN2     RANGE    COUNT RMS  WEIGHT    
REMARK   3    1     A   129    259       B   129    259   16448  0.09  0.05     
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 4                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   129        A   261                          
REMARK   3    ORIGIN FOR THE GROUP (A):  21.7880  48.3400  31.6780              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1862 T22:   0.0088                                     
REMARK   3      T33:   0.0075 T12:   0.0011                                     
REMARK   3      T13:   0.0018 T23:  -0.0029                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.9180 L22:   1.8849                                     
REMARK   3      L33:   2.2792 L12:  -0.2371                                     
REMARK   3      L13:   0.4027 L23:  -0.3969                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0123 S12:  -0.0792 S13:   0.0463                       
REMARK   3      S21:   0.1219 S22:  -0.0307 S23:  -0.0361                       
REMARK   3      S31:   0.0183 S32:  -0.0549 S33:   0.0430                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B   129        B   260                          
REMARK   3    ORIGIN FOR THE GROUP (A):  23.1660  48.9190   0.7360              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1580 T22:   0.0082                                     
REMARK   3      T33:   0.0167 T12:   0.0045                                     
REMARK   3      T13:  -0.0211 T23:  -0.0026                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.0703 L22:   1.8618                                     
REMARK   3      L33:   1.8798 L12:   0.4904                                     
REMARK   3      L13:  -0.4291 L23:  -0.2025                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0025 S12:   0.0864 S13:  -0.0617                       
REMARK   3      S21:  -0.0737 S22:   0.0051 S23:  -0.0706                       
REMARK   3      S31:  -0.0197 S32:  -0.0346 S33:  -0.0026                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   X     1        X    21                          
REMARK   3    ORIGIN FOR THE GROUP (A):  44.2460  84.9630  17.1140              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3841 T22:   0.2491                                     
REMARK   3      T33:   0.5602 T12:   0.0060                                     
REMARK   3      T13:  -0.1294 T23:  -0.0185                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.0809 L22:   8.9806                                     
REMARK   3      L33:   0.0850 L12:  -0.6503                                     
REMARK   3      L13:  -0.0057 L23:  -0.4597                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0538 S12:  -0.0282 S13:  -0.0544                       
REMARK   3      S21:   0.4689 S22:  -0.0028 S23:  -0.3068                       
REMARK   3      S31:   0.0436 S32:  -0.0015 S33:   0.0566                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 4                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   Y     1        Y    23                          
REMARK   3    ORIGIN FOR THE GROUP (A):  44.4980  84.4500  12.8150              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4540 T22:   0.2859                                     
REMARK   3      T33:   0.6613 T12:  -0.0017                                     
REMARK   3      T13:  -0.0288 T23:   0.0170                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.0199 L22:   6.0394                                     
REMARK   3      L33:   0.1022 L12:   0.3129                                     
REMARK   3      L13:  -0.0261 L23:  -0.6568                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0320 S12:  -0.0036 S13:  -0.0179                       
REMARK   3      S21:  -0.0944 S22:  -0.2204 S23:  -0.6366                       
REMARK   3      S31:   0.0568 S32:   0.0351 S33:   0.1883                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 5D9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15.                  
REMARK 100 THE DEPOSITION ID IS D_1000212809.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 31-MAR-09                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X29A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0809                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 37425                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.700                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 88.8                               
REMARK 200  DATA REDUNDANCY                : 7.300                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.76                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 54.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.60                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 2FUF                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 43.67                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 300 MM NH4CL, 28%           
REMARK 280  POLYETHYLENE GLYCOL [PEG] 4000, 20 MM CACL2, PH 8.5, VAPOR          
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 277K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       47.09600            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       31.69650            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       47.09600            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       31.69650            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A   262                                                      
REMARK 465     SER B   261                                                      
REMARK 465     SER B   262                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DG X   1    O5'                                                 
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   OD1  ASN A   191     CE1  HIS A   201     4546     1.89            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 190     -125.06     57.29                                   
REMARK 500    THR A 217       35.20    -96.26                                   
REMARK 500    SER A 219      171.11     66.36                                   
REMARK 500    ASP A 239      130.71    -36.07                                   
REMARK 500    ASP A 239      130.61    -35.22                                   
REMARK 500    SER B 180       52.99     39.30                                   
REMARK 500    TYR B 190     -124.26     55.16                                   
REMARK 500    THR B 217       37.41    -95.53                                   
REMARK 500    SER B 219      172.00     65.88                                   
REMARK 500    ASP B 239      131.75    -36.46                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 301  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA B 212   O                                                      
REMARK 620 2 CME B 216   OH   98.4                                              
REMARK 620 3 CME B 216   O   122.3 120.0                                        
REMARK 620 4 HOH B 433   O   116.2 133.2  67.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA Y 101  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DG Y  22   OP2                                                    
REMARK 620 2 HOH Y 201   O    92.8                                              
REMARK 620 3  DG X  18   OP2  20.9 113.7                                        
REMARK 620 4  DG X  19   O6   20.3 112.9   2.2                                  
REMARK 620 5 HOH X 120   O    87.5  89.7  88.1  90.2                            
REMARK 620 6 HOH X 112   O    87.7 176.9  66.8  67.4  93.4                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA Y 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT Y 102                 
DBREF  5D9I A  131   260  UNP    P03070   LT_SV40        131    260             
DBREF  5D9I B  131   260  UNP    P03070   LT_SV40        131    260             
DBREF  5D9I X    1    21  PDB    5D9I     5D9I             1     21             
DBREF  5D9I Y    1    23  PDB    5D9I     5D9I             1     23             
SEQADV 5D9I GLY A  129  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER A  130  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER A  261  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER A  262  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I GLY B  129  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER B  130  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER B  261  UNP  P03070              EXPRESSION TAG                 
SEQADV 5D9I SER B  262  UNP  P03070              EXPRESSION TAG                 
SEQRES   1 A  134  GLY SER LYS VAL GLU ASP PRO LYS ASP PHE PRO SER GLU          
SEQRES   2 A  134  LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER ASN ARG          
SEQRES   3 A  134  THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS GLU LYS          
SEQRES   4 A  134  ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS TYR SER          
SEQRES   5 A  134  VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN HIS ASN          
SEQRES   6 A  134  ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG VAL SER          
SEQRES   7 A  134  ALA ILE ASN ASN TYR ALA GLN LYS LEU CME THR PHE SER          
SEQRES   8 A  134  PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR LEU MET          
SEQRES   9 A  134  TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL ILE GLU          
SEQRES  10 A  134  GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP PHE ASN          
SEQRES  11 A  134  PRO GLU SER SER                                              
SEQRES   1 B  134  GLY SER LYS VAL GLU ASP PRO LYS ASP PHE PRO SER GLU          
SEQRES   2 B  134  LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER ASN ARG          
SEQRES   3 B  134  THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS GLU LYS          
SEQRES   4 B  134  ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS TYR SER          
SEQRES   5 B  134  VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN HIS ASN          
SEQRES   6 B  134  ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG VAL SER          
SEQRES   7 B  134  ALA ILE ASN ASN TYR ALA GLN LYS LEU CME THR PHE SER          
SEQRES   8 B  134  PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR LEU MET          
SEQRES   9 B  134  TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL ILE GLU          
SEQRES  10 B  134  GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP PHE ASN          
SEQRES  11 B  134  PRO GLU SER SER                                              
SEQRES   1 X   21   DG  DA  DG  DG  DA  DG  DG  DC  DT  DT  DT  DT  DT          
SEQRES   2 X   21   DT  DG  DG  DA  DG  DG  DC  DC                              
SEQRES   1 Y   23   DA  DC  DT  DC  DC  DT  DC  DC  DG  DA  DA  DA  DA          
SEQRES   2 Y   23   DA  DA  DC  DC  DT  DC  DC  DG  DG  DA                      
MODRES 5D9I CME A  216  CYS  MODIFIED RESIDUE                                   
MODRES 5D9I CME B  216  CYS  MODIFIED RESIDUE                                   
HET    CME  A 216      10                                                       
HET    CME  B 216      10                                                       
HET    EDO  A 301       4                                                       
HET     CA  B 301       1                                                       
HET    EDO  B 302       4                                                       
HET     CA  Y 101       1                                                       
HET    ACT  Y 102       4                                                       
HETNAM     CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE                                 
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETNAM      CA CALCIUM ION                                                      
HETNAM     ACT ACETATE ION                                                      
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   1  CME    2(C5 H11 N O3 S2)                                            
FORMUL   5  EDO    2(C2 H6 O2)                                                  
FORMUL   6   CA    2(CA 2+)                                                     
FORMUL   9  ACT    C2 H3 O2 1-                                                  
FORMUL  10  HOH   *230(H2 O)                                                    
HELIX    1 AA1 GLY A  129  ASP A  134  1                                   6    
HELIX    2 AA2 PRO A  139  LEU A  146  5                                   8    
HELIX    3 AA3 THR A  164  SER A  180  1                                  17    
HELIX    4 AA4 ARG A  204  CME A  216  1                                  13    
HELIX    5 AA5 LYS A  228  THR A  237  1                                  10    
HELIX    6 AA6 LYS A  253  ASN A  258  5                                   6    
HELIX    7 AA7 SER B  130  ASP B  134  1                                   5    
HELIX    8 AA8 PRO B  139  LEU B  146  5                                   8    
HELIX    9 AA9 THR B  164  SER B  180  1                                  17    
HELIX   10 AB1 VAL B  205  CME B  216  1                                  12    
HELIX   11 AB2 LYS B  228  THR B  237  1                                  10    
HELIX   12 AB3 LYS B  253  ASN B  258  5                                   6    
SHEET    1 AA1 5 LEU A 221  GLY A 225  0                                        
SHEET    2 AA1 5 LEU A 156  THR A 163 -1  N  TYR A 162   O  ILE A 222           
SHEET    3 AA1 5 HIS A 192  HIS A 203 -1  O  LEU A 195   N  ILE A 161           
SHEET    4 AA1 5 PHE A 183  SER A 189 -1  N  HIS A 187   O  ILE A 194           
SHEET    5 AA1 5 PHE A 241  GLU A 246 -1  O  ILE A 244   N  ARG A 186           
SHEET    1 AA2 5 LEU B 221  GLY B 225  0                                        
SHEET    2 AA2 5 THR B 155  THR B 163 -1  N  TYR B 162   O  ILE B 222           
SHEET    3 AA2 5 HIS B 192  ARG B 204 -1  O  LEU B 195   N  ILE B 161           
SHEET    4 AA2 5 PHE B 183  SER B 189 -1  N  HIS B 187   O  ILE B 194           
SHEET    5 AA2 5 PHE B 241  GLU B 246 -1  O  ILE B 244   N  ARG B 186           
LINK         C   LEU A 215                 N   CME A 216     1555   1555  1.33  
LINK         C   CME A 216                 N   THR A 217     1555   1555  1.32  
LINK         O   ALA B 212                CA    CA B 301     1555   1555  2.56  
LINK         C   LEU B 215                 N   CME B 216     1555   1555  1.32  
LINK         OH  CME B 216                CA    CA B 301     1555   1555  2.70  
LINK         C   CME B 216                 N   THR B 217     1555   1555  1.32  
LINK         O   CME B 216                CA    CA B 301     1555   1555  2.83  
LINK         OP2  DG Y  22                CA    CA Y 101     1555   1555  2.35  
LINK        CA    CA B 301                 O   HOH B 433     1555   1555  2.25  
LINK        CA    CA Y 101                 O   HOH Y 201     1555   1555  2.44  
LINK         OD1 ASN A 191                 ND1BHIS A 201     1555   4546  1.48  
LINK         OP2  DG X  18                CA    CA Y 101     1555   1565  2.19  
LINK         O6   DG X  19                CA    CA Y 101     1555   1565  2.27  
LINK        CA    CA Y 101                 O   HOH X 120     1555   1545  2.18  
LINK        CA    CA Y 101                 O   HOH X 112     1555   1545  2.33  
CISPEP   1 ASP A  239    PRO A  240          0         4.70                     
CISPEP   2 ASP A  239    PRO A  240          0         4.87                     
CISPEP   3 ASP B  239    PRO B  240          0         6.37                     
SITE     1 AC1  4 ASN A 209  ILE A 222  CYS A 223  HOH A 413                    
SITE     1 AC2  5 LYS B 167  ALA B 212  GLN B 213  CME B 216                    
SITE     2 AC2  5 HOH B 433                                                     
SITE     1 AC3  5 ASN B 209  ILE B 222  CYS B 223  HOH B 436                    
SITE     2 AC3  5 HOH B 438                                                     
SITE     1 AC4  6  DG X  18   DG X  19  HOH X 112  HOH X 120                    
SITE     2 AC4  6  DG Y  22  HOH Y 201                                          
SITE     1 AC5  5 ASN B 153   DA X  17   DG X  18   DG Y  22                    
SITE     2 AC5  5 HOH Y 201                                                     
CRYST1   94.192   63.393   64.891  90.00  92.42  90.00 C 1 2 1       8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010617  0.000000  0.000449        0.00000                         
SCALE2      0.000000  0.015775  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015424        0.00000