PDB Short entry for 5DI8 HEADER IMMUNE SYSTEM 31-AUG-15 5DI8 TITLE FC KNOB-HOLE HETERODIMER T366W + T366S/L368A/Y407V COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 104-330; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 104-330; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FC-III PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IGHG1; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 OTHER_DETAILS: CPC SCIENTIFIC INC., SUNNYVALE CA KEYWDS HETERODIMER, IMMUNOGLOBULIN, CH3, FC, BISPECIFIC ANTIBODY, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ATWELL,A.LEAVER-FAY,K.J.FRONING,H.ALDAZ,A.PUSTILNIK,F.LU,F.HUANG, AUTHOR 2 R.YUAN,S.H.DHANANI,A.K.CHAMBERLAIN,J.R.FITCHETT,B.GUTIERREZ, AUTHOR 3 J.HENDLE,E.SECRIST,S.J.DEMAREST,B.KUHLMAN REVDAT 5 27-SEP-23 5DI8 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 5DI8 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-NOV-17 5DI8 1 JRNL REMARK REVDAT 2 27-APR-16 5DI8 1 JRNL REVDAT 1 30-MAR-16 5DI8 0 JRNL AUTH A.LEAVER-FAY,K.J.FRONING,S.ATWELL,H.ALDAZ,A.PUSTILNIK,F.LU, JRNL AUTH 2 F.HUANG,R.YUAN,S.HASSANALI,A.K.CHAMBERLAIN,J.R.FITCHETT, JRNL AUTH 3 S.J.DEMAREST,B.KUHLMAN JRNL TITL COMPUTATIONALLY DESIGNED BISPECIFIC ANTIBODIES USING JRNL TITL 2 NEGATIVE STATE REPERTOIRES. JRNL REF STRUCTURE V. 24 641 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26996964 JRNL DOI 10.1016/J.STR.2016.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 43807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -2.07000 REMARK 3 B33 (A**2) : 1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3705 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5081 ; 1.551 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;37.555 ;25.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;15.863 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2698 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DIAMOND (111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46181 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DN2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5 + 2% ISOPROPANOL + REMARK 280 18% PEG 8K + 100MM SODIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.41750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 SER B 216 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 GLY B 219 REMARK 465 SER B 220 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 296 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 360 CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLN B 311 CG CD OE1 NE2 REMARK 470 ARG B 355 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 360 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 360 CG LYS A 360 CD -0.586 REMARK 500 TRP B 381 CE2 TRP B 381 CD2 0.075 REMARK 500 TRP C 11 CE2 TRP C 11 CD2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 360 CB - CG - CD ANGL. DEV. = 44.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 374 -174.35 -67.92 REMARK 500 SER B 298 12.39 80.51 REMARK 500 THR B 359 64.93 -111.83 REMARK 500 PRO B 374 -174.87 -68.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DJ0 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ2 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ6 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ8 RELATED DB: PDB REMARK 900 RELATED ID: 5DJA RELATED DB: PDB REMARK 900 RELATED ID: 5DJC RELATED DB: PDB REMARK 900 RELATED ID: 5DJD RELATED DB: PDB REMARK 900 RELATED ID: 5DJX RELATED DB: PDB REMARK 900 RELATED ID: 5DJY RELATED DB: PDB REMARK 900 RELATED ID: 5DJZ RELATED DB: PDB REMARK 900 RELATED ID: 5DK0 RELATED DB: PDB REMARK 900 RELATED ID: 5DK2 RELATED DB: PDB REMARK 900 RELATED ID: 5DVK RELATED DB: PDB REMARK 900 RELATED ID: 5DVL RELATED DB: PDB REMARK 900 RELATED ID: 5DVM RELATED DB: PDB REMARK 900 RELATED ID: 5DVN RELATED DB: PDB REMARK 900 RELATED ID: 5DVO RELATED DB: PDB DBREF 5DI8 A 221 447 UNP P01857 IGHG1_HUMAN 104 330 DBREF 5DI8 B 221 447 UNP P01857 IGHG1_HUMAN 104 330 DBREF 5DI8 C 1 13 PDB 5DI8 5DI8 1 13 SEQADV 5DI8 GLU A 356 UNP P01857 ASP 239 VARIANT SEQADV 5DI8 MET A 358 UNP P01857 LEU 241 VARIANT SEQADV 5DI8 TRP A 366 UNP P01857 THR 249 ENGINEERED MUTATION SEQADV 5DI8 HIS B 208 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 209 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 210 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 211 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 212 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 213 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 214 UNP P01857 EXPRESSION TAG SEQADV 5DI8 HIS B 215 UNP P01857 EXPRESSION TAG SEQADV 5DI8 SER B 216 UNP P01857 EXPRESSION TAG SEQADV 5DI8 GLY B 217 UNP P01857 EXPRESSION TAG SEQADV 5DI8 SER B 218 UNP P01857 EXPRESSION TAG SEQADV 5DI8 GLY B 219 UNP P01857 EXPRESSION TAG SEQADV 5DI8 SER B 220 UNP P01857 EXPRESSION TAG SEQADV 5DI8 GLU B 252 UNP P01857 MET 135 ENGINEERED MUTATION SEQADV 5DI8 ALA B 253 UNP P01857 ILE 136 ENGINEERED MUTATION SEQADV 5DI8 GLU B 356 UNP P01857 ASP 239 VARIANT SEQADV 5DI8 MET B 358 UNP P01857 LEU 241 VARIANT SEQADV 5DI8 SER B 366 UNP P01857 THR 249 ENGINEERED MUTATION SEQADV 5DI8 ALA B 368 UNP P01857 LEU 251 ENGINEERED MUTATION SEQADV 5DI8 VAL B 407 UNP P01857 TYR 290 ENGINEERED MUTATION SEQADV 5DI8 ALA B 435 UNP P01857 HIS 318 ENGINEERED MUTATION SEQRES 1 A 227 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 A 227 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 227 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 227 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 A 227 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 227 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 A 227 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 227 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 227 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 A 227 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 11 A 227 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 12 A 227 SER LEU TRP CYS LEU VAL LYS GLY PHE TYR PRO SER ASP SEQRES 13 A 227 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 A 227 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 15 A 227 SER PHE PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER SEQRES 16 A 227 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 A 227 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 A 227 SER LEU SER PRO GLY LYS SEQRES 1 B 240 HIS HIS HIS HIS HIS HIS HIS HIS SER GLY SER GLY SER SEQRES 2 B 240 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 3 B 240 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 4 B 240 PRO LYS ASP THR LEU GLU ALA SER ARG THR PRO GLU VAL SEQRES 5 B 240 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 6 B 240 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 7 B 240 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 8 B 240 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 9 B 240 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 10 B 240 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 11 B 240 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 12 B 240 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 13 B 240 SER LEU SER CYS ALA VAL LYS GLY PHE TYR PRO SER ASP SEQRES 14 B 240 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 15 B 240 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 16 B 240 SER PHE PHE LEU VAL SER LYS LEU THR VAL ASP LYS SER SEQRES 17 B 240 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 18 B 240 HIS GLU ALA LEU HIS ASN ALA TYR THR GLN LYS SER LEU SEQRES 19 B 240 SER LEU SER PRO GLY LYS SEQRES 1 C 13 ASP CYS ALA TRP HIS LEU GLY GLU LEU VAL TRP CYS THR HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET FUC D 8 10 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG E 5 14 HET GAL E 6 11 HET MAN E 7 11 HET FUC E 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 4 GAL 2(C6 H12 O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 6 HOH *205(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 MET A 358 5 5 HELIX 4 AA4 LYS A 414 GLN A 419 1 6 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 GLU B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 THR B 359 5 6 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 TYR B 436 5 5 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 THR A 299 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 THR A 299 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA2 4 GLU A 293 GLN A 295 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LYS A 370 N GLN A 347 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LYS A 370 N GLN A 347 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 TYR A 436 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 AA7 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 SER B 239 PHE B 243 0 SHEET 2 AA8 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA8 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 AA8 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AA9 4 VAL B 282 VAL B 284 0 SHEET 2 AA9 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA9 4 TYR B 319 SER B 324 -1 O LYS B 320 N TYR B 278 SHEET 4 AA9 4 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O SER B 366 N LEU B 351 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB2 4 GLN B 347 LEU B 351 0 SHEET 2 AB2 4 GLN B 362 PHE B 372 -1 O SER B 366 N LEU B 351 SHEET 3 AB2 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB2 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB3 4 GLN B 386 PRO B 387 0 SHEET 2 AB3 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB3 4 PHE B 423 MET B 428 -1 O SER B 424 N GLU B 382 SHEET 4 AB3 4 THR B 437 LEU B 441 -1 O LYS B 439 N CYS B 425 SHEET 1 AB4 2 CYS C 2 HIS C 5 0 SHEET 2 AB4 2 GLU C 8 CYS C 12 -1 O GLU C 8 N HIS C 5 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.02 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.07 SSBOND 4 CYS B 367 CYS B 425 1555 1555 1.99 SSBOND 5 CYS C 2 CYS C 12 1555 1555 2.06 LINK ND2 ASN A 297 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN B 297 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 8 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.42 LINK O3 BMA E 3 C1 MAN E 7 1555 1555 1.46 LINK O2 MAN E 4 C1 NAG E 5 1555 1555 1.42 LINK O4 NAG E 5 C1 GAL E 6 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 -6.50 CISPEP 2 TYR B 373 PRO B 374 0 -6.44 CRYST1 60.297 66.835 79.214 90.00 104.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016585 0.000000 0.004435 0.00000 SCALE2 0.000000 0.014962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013068 0.00000