PDB Short entry for 5DPT HEADER PROTEIN BINDING 14-SEP-15 5DPT TITLE CRYSTAL STRUCTURE OF PLEKHM1 LIR-FUSED HUMAN GABARAPL1_2-117 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 1, COMPND 3 GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1,GAMMA- COMPND 4 AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1; COMPND 5 CHAIN: A, B; COMPND 6 FRAGMENT: UNP Q9Y4G2 627-638, UNP Q9H0R8 2-117; COMPND 7 SYNONYM: PH DOMAIN-CONTAINING FAMILY M MEMBER 1,162 KDA ADAPTER COMPND 8 PROTEIN,AP162,EARLY ESTROGEN-REGULATED PROTEIN,GABA(A) RECEPTOR- COMPND 9 ASSOCIATED PROTEIN-LIKE 1,GLANDULAR EPITHELIAL CELL PROTEIN 1,GEC-1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHM1, GABARAPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS AUTOPHAGY, CHIMERIC PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.C.RAVICHANDRAN,H.SUZUKI,R.C.J.DOBSON REVDAT 3 06-MAR-24 5DPT 1 REMARK REVDAT 2 20-JUN-18 5DPT 1 JRNL REMARK REVDAT 1 28-SEP-16 5DPT 0 JRNL AUTH V.V.ROGOV,A.STOLZ,A.C.RAVICHANDRAN,D.O.RIOS-SZWED,H.SUZUKI, JRNL AUTH 2 A.KNISS,F.LOHR,S.WAKATSUKI,V.DOTSCH,I.DIKIC,R.C.DOBSON, JRNL AUTH 3 D.G.MCEWAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE GABARAP JRNL TITL 2 INTERACTION MOTIF (GIM). JRNL REF EMBO REP. V. 18 1382 2017 JRNL REFN ESSN 1469-3178 JRNL PMID 28655748 JRNL DOI 10.15252/EMBR.201643587 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.560 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8303 - 4.6023 1.00 2496 130 0.1900 0.2136 REMARK 3 2 4.6023 - 3.6536 1.00 2381 139 0.2107 0.2481 REMARK 3 3 3.6536 - 3.1919 1.00 2349 144 0.2619 0.3666 REMARK 3 4 3.1919 - 2.9001 1.00 2317 149 0.3081 0.3699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2004 REMARK 3 ANGLE : 0.778 2741 REMARK 3 CHIRALITY : 0.030 294 REMARK 3 PLANARITY : 0.004 361 REMARK 3 DIHEDRAL : 12.428 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:22) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2169 19.0140 -9.8339 REMARK 3 T TENSOR REMARK 3 T11: 0.9850 T22: 0.9923 REMARK 3 T33: 0.6708 T12: 0.0793 REMARK 3 T13: -0.0636 T23: -0.3169 REMARK 3 L TENSOR REMARK 3 L11: 5.5499 L22: 9.4166 REMARK 3 L33: 5.9543 L12: -0.4136 REMARK 3 L13: 0.1382 L23: 1.1956 REMARK 3 S TENSOR REMARK 3 S11: 0.3429 S12: 0.8761 S13: -0.4493 REMARK 3 S21: -1.7844 S22: 0.4018 S23: -0.6272 REMARK 3 S31: 0.6397 S32: 0.9560 S33: -0.6731 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 23:55) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3508 28.1489 -3.8730 REMARK 3 T TENSOR REMARK 3 T11: 0.7240 T22: 0.8853 REMARK 3 T33: 0.8555 T12: -0.0529 REMARK 3 T13: -0.1025 T23: -0.3105 REMARK 3 L TENSOR REMARK 3 L11: 10.6193 L22: 3.9455 REMARK 3 L33: 9.8168 L12: 0.9269 REMARK 3 L13: -0.0024 L23: 1.3217 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 1.5992 S13: -1.0728 REMARK 3 S21: -0.0383 S22: 0.0652 S23: -1.2770 REMARK 3 S31: -0.0781 S32: 1.4820 S33: -0.4166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 56:121) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6158 30.0686 2.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.5434 REMARK 3 T33: 0.4421 T12: -0.0305 REMARK 3 T13: -0.0752 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 8.3763 L22: 7.6400 REMARK 3 L33: 9.1831 L12: 3.5532 REMARK 3 L13: 0.1384 L23: 2.0839 REMARK 3 S TENSOR REMARK 3 S11: 0.6173 S12: 0.1703 S13: -0.5070 REMARK 3 S21: 0.3586 S22: -0.1274 S23: -0.0747 REMARK 3 S31: 0.0171 S32: 0.2089 S33: -0.4943 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:123) REMARK 3 ORIGIN FOR THE GROUP (A): -55.0391 7.7926 -10.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.4975 T22: 0.4636 REMARK 3 T33: 0.5267 T12: -0.0814 REMARK 3 T13: 0.0384 T23: -0.1020 REMARK 3 L TENSOR REMARK 3 L11: 9.6469 L22: 8.1905 REMARK 3 L33: 6.3824 L12: -3.6962 REMARK 3 L13: 1.6040 L23: -3.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.1803 S12: -0.2042 S13: -0.2702 REMARK 3 S21: 0.5060 S22: -0.0568 S23: 0.3445 REMARK 3 S31: 0.4217 S32: -0.2068 S33: 0.2409 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.826 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V POLYETHYLENE GLYCOL 3,350, 0.2 REMARK 280 M NACL, 8% MPD PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.29333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.14667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.14667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.29333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 VAL A -5 REMARK 465 ARG A -4 REMARK 465 PRO A -3 REMARK 465 GLN A -2 REMARK 465 GLN A -1 REMARK 465 TYR A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 VAL B -5 REMARK 465 ARG B -4 REMARK 465 PRO B -3 REMARK 465 GLN B -2 REMARK 465 GLN B -1 REMARK 465 GLU B 0 REMARK 465 LYS B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 TYR A 20 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 42 CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 53 CE NZ REMARK 470 SER A 60 OG REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 PRO A 79 CG CD REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 PHE B 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 22 CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 LYS B 53 CE NZ REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 TYR B 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 17 148.59 -37.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DPR RELATED DB: PDB REMARK 900 RELATED ID: 5DPS RELATED DB: PDB REMARK 900 RELATED ID: 5DPW RELATED DB: PDB REMARK 900 RELATED ID: 3X0W RELATED DB: PDB DBREF 5DPT A -5 6 UNP Q9Y4G2 PKHM1_HUMAN 627 638 DBREF 5DPT A 9 124 UNP Q9H0R8 GBRL1_HUMAN 2 117 DBREF 5DPT B -5 6 UNP Q9Y4G2 PKHM1_HUMAN 627 638 DBREF 5DPT B 9 124 UNP Q9H0R8 GBRL1_HUMAN 2 117 SEQADV 5DPT GLY A -7 UNP Q9Y4G2 EXPRESSION TAG SEQADV 5DPT SER A -6 UNP Q9Y4G2 EXPRESSION TAG SEQADV 5DPT GLY A 7 UNP Q9Y4G2 LINKER SEQADV 5DPT SER A 8 UNP Q9Y4G2 LINKER SEQADV 5DPT GLY B -7 UNP Q9Y4G2 EXPRESSION TAG SEQADV 5DPT SER B -6 UNP Q9Y4G2 EXPRESSION TAG SEQADV 5DPT GLY B 7 UNP Q9Y4G2 LINKER SEQADV 5DPT SER B 8 UNP Q9Y4G2 LINKER SEQRES 1 A 132 GLY SER VAL ARG PRO GLN GLN GLU ASP GLU TRP VAL ASN SEQRES 2 A 132 VAL GLY SER LYS PHE GLN TYR LYS GLU ASP HIS PRO PHE SEQRES 3 A 132 GLU TYR ARG LYS LYS GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 4 A 132 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 5 A 132 LYS ALA ARG VAL PRO ASP LEU ASP LYS ARG LYS TYR LEU SEQRES 6 A 132 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 7 A 132 ILE ARG LYS ARG ILE HIS LEU ARG PRO GLU ASP ALA LEU SEQRES 8 A 132 PHE PHE PHE VAL ASN ASN THR ILE PRO PRO THR SER ALA SEQRES 9 A 132 THR MET GLY GLN LEU TYR GLU ASP ASN HIS GLU GLU ASP SEQRES 10 A 132 TYR PHE LEU TYR VAL ALA TYR SER ASP GLU SER VAL TYR SEQRES 11 A 132 GLY LYS SEQRES 1 B 132 GLY SER VAL ARG PRO GLN GLN GLU ASP GLU TRP VAL ASN SEQRES 2 B 132 VAL GLY SER LYS PHE GLN TYR LYS GLU ASP HIS PRO PHE SEQRES 3 B 132 GLU TYR ARG LYS LYS GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 4 B 132 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 5 B 132 LYS ALA ARG VAL PRO ASP LEU ASP LYS ARG LYS TYR LEU SEQRES 6 B 132 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 7 B 132 ILE ARG LYS ARG ILE HIS LEU ARG PRO GLU ASP ALA LEU SEQRES 8 B 132 PHE PHE PHE VAL ASN ASN THR ILE PRO PRO THR SER ALA SEQRES 9 B 132 THR MET GLY GLN LEU TYR GLU ASP ASN HIS GLU GLU ASP SEQRES 10 B 132 TYR PHE LEU TYR VAL ALA TYR SER ASP GLU SER VAL TYR SEQRES 11 B 132 GLY LYS HET MPD A 201 8 HET MPD B 201 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MPD 2(C6 H14 O2) HELIX 1 AA1 GLN A 11 HIS A 16 1 6 HELIX 2 AA2 PRO A 17 TYR A 32 1 16 HELIX 3 AA3 THR A 63 HIS A 76 1 14 HELIX 4 AA4 THR A 97 HIS A 106 1 10 HELIX 5 AA5 GLN B 11 HIS B 16 1 6 HELIX 6 AA6 PRO B 17 TYR B 32 1 16 HELIX 7 AA7 THR B 63 HIS B 76 1 14 HELIX 8 AA8 THR B 97 HIS B 106 1 10 SHEET 1 AA1 5 VAL A 4 ASN A 5 0 SHEET 2 AA1 5 LYS B 55 PRO B 59 1 O LEU B 57 N VAL A 4 SHEET 3 AA1 5 ARG B 35 LYS B 42 -1 N VAL B 36 O VAL B 58 SHEET 4 AA1 5 LEU B 112 SER B 117 1 O LEU B 112 N ILE B 39 SHEET 5 AA1 5 PHE B 84 PHE B 86 -1 N PHE B 86 O ALA B 115 SHEET 1 AA2 4 LYS A 55 PRO A 59 0 SHEET 2 AA2 4 ARG A 35 LYS A 42 -1 N VAL A 36 O VAL A 58 SHEET 3 AA2 4 LEU A 112 SER A 117 1 O LEU A 112 N ILE A 39 SHEET 4 AA2 4 PHE A 84 PHE A 86 -1 N PHE A 86 O ALA A 115 CISPEP 1 GLU A 0 ASP A 1 0 -0.92 CISPEP 2 GLY B 7 SER B 8 0 2.93 CISPEP 3 PRO B 79 GLU B 80 0 8.18 CISPEP 4 VAL B 121 TYR B 122 0 3.77 SITE 1 AC1 6 PHE A 69 PRO A 79 TYR B 68 PHE B 85 SITE 2 AC1 6 ILE B 91 THR B 94 SITE 1 AC2 6 TYR A 68 PHE A 84 PHE A 85 ILE A 91 SITE 2 AC2 6 PRO A 92 PRO B 79 CRYST1 84.791 84.791 105.440 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011794 0.006809 0.000000 0.00000 SCALE2 0.000000 0.013618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009484 0.00000