PDB Short entry for 5E0U HEADER DNA BINDING PROTEIN 29-SEP-15 5E0U TITLE HUMAN PCNA VARIANT (S228I) COMPLEXED WITH P21 AT 1.9 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE INHIBITOR 1; COMPND 9 CHAIN: D, E, F; COMPND 10 SYNONYM: CDK-INTERACTING PROTEIN 1,MELANOMA DIFFERENTIATION- COMPND 11 ASSOCIATED PROTEIN 6,MDA-6,P21; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3C; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DNA REPLICATION, SLIDING CLAMP, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.DUFFY,B.J.HILBERT,B.A.KELCH REVDAT 3 27-SEP-23 5E0U 1 REMARK REVDAT 2 22-NOV-17 5E0U 1 JRNL REMARK REVDAT 1 20-APR-16 5E0U 0 JRNL AUTH C.M.DUFFY,B.J.HILBERT,B.A.KELCH JRNL TITL A DISEASE-CAUSING VARIANT IN PCNA DISRUPTS A PROMISCUOUS JRNL TITL 2 PROTEIN BINDING SITE. JRNL REF J.MOL.BIOL. V. 428 1023 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26688547 JRNL DOI 10.1016/J.JMB.2015.11.029 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4729 - 4.6408 0.97 4957 136 0.1197 0.1761 REMARK 3 2 4.6408 - 3.6861 0.97 4965 140 0.1085 0.2053 REMARK 3 3 3.6861 - 3.2209 0.97 4955 142 0.1371 0.2124 REMARK 3 4 3.2209 - 2.9267 0.97 4964 146 0.1667 0.2247 REMARK 3 5 2.9267 - 2.7171 0.97 5006 142 0.1877 0.2357 REMARK 3 6 2.7171 - 2.5570 0.97 4991 142 0.1997 0.2318 REMARK 3 7 2.5570 - 2.4290 0.97 4928 148 0.2131 0.2254 REMARK 3 8 2.4290 - 2.3233 0.97 5027 144 0.2272 0.2574 REMARK 3 9 2.3233 - 2.2339 0.97 4970 142 0.2297 0.3041 REMARK 3 10 2.2339 - 2.1569 0.97 4966 144 0.2320 0.2772 REMARK 3 11 2.1569 - 2.0895 0.97 4988 144 0.2370 0.2801 REMARK 3 12 2.0895 - 2.0297 0.97 4985 148 0.2533 0.3071 REMARK 3 13 2.0297 - 1.9763 0.97 4928 142 0.2512 0.2442 REMARK 3 14 1.9763 - 1.9300 0.97 5012 142 0.2902 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6471 REMARK 3 ANGLE : 1.592 8728 REMARK 3 CHIRALITY : 0.069 1024 REMARK 3 PLANARITY : 0.008 1116 REMARK 3 DIHEDRAL : 14.970 2431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 34.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, PHASER REMARK 200 STARTING MODEL: 1AXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 GLU C 256 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 CYS D 138 REMARK 465 GLY D 139 REMARK 465 ARG D 140 REMARK 465 LYS D 141 REMARK 465 ARG D 142 REMARK 465 CYS E 138 REMARK 465 GLY E 139 REMARK 465 ARG E 140 REMARK 465 LYS E 141 REMARK 465 CYS F 138 REMARK 465 GLY F 139 REMARK 465 ARG F 140 REMARK 465 LYS F 141 REMARK 465 ARG F 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 130 O HOH A 301 1.68 REMARK 500 NH1 ARG A 146 OD2 ASP A 150 1.74 REMARK 500 O HOH A 355 O HOH A 478 1.82 REMARK 500 O HOH A 383 O HOH A 502 1.85 REMARK 500 O HOH A 415 O HOH A 489 1.85 REMARK 500 O HOH B 394 O HOH B 398 1.86 REMARK 500 O HOH A 459 O HOH A 507 1.86 REMARK 500 OH TYR A 114 O HOH A 302 1.86 REMARK 500 O HOH E 207 O HOH E 218 1.87 REMARK 500 ND2 ASN C 177 O HOH C 301 1.88 REMARK 500 O HOH B 429 O HOH B 431 1.88 REMARK 500 O HOH C 476 O HOH F 225 1.88 REMARK 500 NZ LYS A 254 O HOH A 303 1.89 REMARK 500 O HOH A 392 O HOH A 464 1.89 REMARK 500 O HOH A 330 O HOH A 487 1.89 REMARK 500 O HOH B 367 O HOH E 201 1.90 REMARK 500 NZ LYS B 190 O HOH B 301 1.90 REMARK 500 O HOH D 221 O HOH D 223 1.90 REMARK 500 O HOH B 475 O HOH B 483 1.91 REMARK 500 O HOH B 407 O HOH B 460 1.91 REMARK 500 O HOH C 419 O HOH C 466 1.91 REMARK 500 OD2 ASP C 150 O HOH C 302 1.92 REMARK 500 O HOH A 490 O HOH A 533 1.93 REMARK 500 OE1 GLN C 8 O HOH C 303 1.93 REMARK 500 O HOH B 383 O HOH B 440 1.94 REMARK 500 OD2 ASP C 41 OG SER C 43 1.94 REMARK 500 O ASN A 24 O HOH A 304 1.94 REMARK 500 O HOH A 464 O HOH A 494 1.95 REMARK 500 OE2 GLU A 55 O HOH A 305 1.95 REMARK 500 O HOH C 459 O HOH C 462 1.95 REMARK 500 O HOH B 405 O HOH B 464 1.96 REMARK 500 O SER A 172 O HOH A 306 1.96 REMARK 500 O HOH B 408 O HOH B 438 1.97 REMARK 500 O HOH A 424 O HOH A 493 1.97 REMARK 500 N HIS F 152 O HOH F 201 1.98 REMARK 500 O HOH B 382 O HOH B 388 1.99 REMARK 500 O HOH A 470 O HOH A 511 1.99 REMARK 500 O HOH F 224 O HOH F 226 2.00 REMARK 500 O HOH B 344 O HOH B 371 2.01 REMARK 500 OG1 THR A 59 O HOH A 307 2.01 REMARK 500 O HOH A 477 O HOH A 491 2.01 REMARK 500 N MET A 1 OD1 ASP A 94 2.01 REMARK 500 NE2 GLN C 131 O HOH C 304 2.02 REMARK 500 OE1 GLU B 17 NZ LYS B 20 2.03 REMARK 500 OH TYR F 151 O HOH F 202 2.03 REMARK 500 O GLY A 166 O HOH A 308 2.03 REMARK 500 NZ LYS B 181 O HOH B 302 2.03 REMARK 500 OD2 ASP A 97 O HOH A 309 2.04 REMARK 500 OH TYR D 151 O HOH D 201 2.04 REMARK 500 O HOH C 322 O HOH C 441 2.05 REMARK 500 REMARK 500 THIS ENTRY HAS 114 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 390 O HOH E 202 1554 2.03 REMARK 500 O HOH B 434 O HOH B 444 3555 2.03 REMARK 500 O HOH B 302 O HOH C 366 3555 2.14 REMARK 500 O HOH B 495 O HOH B 498 1556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 49 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 189 -76.13 -97.57 REMARK 500 SER B 134 -9.76 77.19 REMARK 500 ASP B 189 -75.35 -101.89 REMARK 500 ASP B 232 15.32 59.38 REMARK 500 MET B 244 -26.54 -140.46 REMARK 500 SER C 134 -9.14 -59.43 REMARK 500 ASP C 189 -78.11 -101.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 537 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 11.12 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 11.92 ANGSTROMS REMARK 525 HOH B 496 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 498 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 500 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH C 477 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C 478 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH C 479 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH C 480 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH C 481 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH C 482 DISTANCE = 8.67 ANGSTROMS REMARK 525 HOH D 223 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH D 224 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH F 225 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH F 226 DISTANCE = 5.92 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AXC RELATED DB: PDB REMARK 900 RELATED ID: 5E0T RELATED DB: PDB REMARK 900 RELATED ID: 5E0V RELATED DB: PDB DBREF 5E0U A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5E0U B 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5E0U C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5E0U D 139 160 UNP P38936 CDN1A_HUMAN 139 160 DBREF 5E0U E 139 160 UNP P38936 CDN1A_HUMAN 139 160 DBREF 5E0U F 139 160 UNP P38936 CDN1A_HUMAN 139 160 SEQADV 5E0U ILE A 228 UNP P12004 SER 228 ENGINEERED MUTATION SEQADV 5E0U ILE B 228 UNP P12004 SER 228 ENGINEERED MUTATION SEQADV 5E0U ILE C 228 UNP P12004 SER 228 ENGINEERED MUTATION SEQADV 5E0U CYS D 138 UNP P38936 EXPRESSION TAG SEQADV 5E0U CYS E 138 UNP P38936 EXPRESSION TAG SEQADV 5E0U CYS F 138 UNP P38936 EXPRESSION TAG SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU ILE MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 B 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 B 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 B 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 B 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 B 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 B 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 B 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 B 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 B 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 B 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 B 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 B 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 B 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 B 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 B 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 B 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 B 261 SER SER THR VAL THR LEU ILE MET SER ALA ASP VAL PRO SEQRES 19 B 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 B 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 B 261 SER SEQRES 1 C 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 C 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 C 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 C 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 C 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 C 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 C 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 C 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 C 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 C 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 C 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 C 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 C 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 C 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 C 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 C 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 C 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 C 261 SER SER THR VAL THR LEU ILE MET SER ALA ASP VAL PRO SEQRES 19 C 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 C 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 C 261 SER SEQRES 1 D 23 CYS GLY ARG LYS ARG ARG GLN THR SER MET THR ASP PHE SEQRES 2 D 23 TYR HIS SER LYS ARG ARG LEU ILE PHE SER SEQRES 1 E 23 CYS GLY ARG LYS ARG ARG GLN THR SER MET THR ASP PHE SEQRES 2 E 23 TYR HIS SER LYS ARG ARG LEU ILE PHE SER SEQRES 1 F 23 CYS GLY ARG LYS ARG ARG GLN THR SER MET THR ASP PHE SEQRES 2 F 23 TYR HIS SER LYS ARG ARG LEU ILE PHE SER FORMUL 7 HOH *701(H2 O) HELIX 1 AA1 GLY A 9 ALA A 18 1 10 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 LYS A 80 1 9 HELIX 4 AA4 SER A 141 SER A 152 1 12 HELIX 5 AA5 LYS A 190 ALA A 194 5 5 HELIX 6 AA6 LEU A 209 THR A 216 1 8 HELIX 7 AA7 LYS A 217 SER A 222 5 6 HELIX 8 AA8 GLY B 9 LYS B 20 1 12 HELIX 9 AA9 GLU B 55 PHE B 57 5 3 HELIX 10 AB1 LEU B 72 CYS B 81 1 10 HELIX 11 AB2 SER B 141 SER B 152 1 12 HELIX 12 AB3 LYS B 190 ALA B 194 5 5 HELIX 13 AB4 LEU B 209 THR B 216 1 8 HELIX 14 AB5 LYS B 217 SER B 222 5 6 HELIX 15 AB6 GLN C 8 ASP C 21 1 14 HELIX 16 AB7 GLU C 55 PHE C 57 5 3 HELIX 17 AB8 LEU C 72 CYS C 81 1 10 HELIX 18 AB9 SER C 141 SER C 152 1 12 HELIX 19 AC1 LYS C 190 ALA C 194 5 5 HELIX 20 AC2 LEU C 209 THR C 216 1 8 HELIX 21 AC3 LYS C 217 SER C 222 5 6 HELIX 22 AC4 SER D 146 PHE D 150 5 5 HELIX 23 AC5 SER E 146 PHE E 150 5 5 HELIX 24 AC6 SER F 146 PHE F 150 5 5 SHEET 1 AA1 5 THR A 59 CYS A 62 0 SHEET 2 AA1 5 PHE A 2 LEU A 6 -1 N ARG A 5 O THR A 59 SHEET 3 AA1 5 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 5 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 5 VAL A 111 LYS A 117 -1 O TYR A 114 N LEU A 101 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 ILE A 30 -1 N ILE A 30 O LEU A 66 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O LEU A 50 N LEU A 37 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 LEU A 235 ILE A 241 -1 N VAL A 237 O TYR A 249 SHEET 7 AA2 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N CYS A 135 O MET A 229 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O GLU A 198 N VAL A 136 SHEET 1 AA3 2 LEU A 121 LEU A 126 0 SHEET 2 AA3 2 SER D 153 ILE D 158 -1 O LYS D 154 N GLN A 125 SHEET 1 AA4 4 GLY A 176 SER A 183 0 SHEET 2 AA4 4 GLY A 166 GLY A 173 -1 N VAL A 167 O LEU A 182 SHEET 3 AA4 4 ALA A 157 CYS A 162 -1 N VAL A 159 O SER A 170 SHEET 4 AA4 4 VAL A 203 ALA A 208 -1 O VAL A 203 N CYS A 162 SHEET 1 AA5 5 THR B 59 CYS B 62 0 SHEET 2 AA5 5 PHE B 2 LEU B 6 -1 N ARG B 5 O THR B 59 SHEET 3 AA5 5 ILE B 87 ALA B 92 -1 O ILE B 88 N LEU B 6 SHEET 4 AA5 5 THR B 98 GLU B 104 -1 O VAL B 102 N THR B 89 SHEET 5 AA5 5 VAL B 111 LYS B 117 -1 O MET B 116 N LEU B 99 SHEET 1 AA6 9 LEU B 66 ASN B 71 0 SHEET 2 AA6 9 GLU B 25 ILE B 30 -1 N ILE B 30 O LEU B 66 SHEET 3 AA6 9 GLY B 34 MET B 40 -1 O ASN B 36 N ASP B 29 SHEET 4 AA6 9 SER B 46 ARG B 53 -1 O LEU B 50 N LEU B 37 SHEET 5 AA6 9 GLY B 245 LEU B 251 -1 O TYR B 250 N LEU B 47 SHEET 6 AA6 9 LEU B 235 ILE B 241 -1 N LEU B 235 O LEU B 251 SHEET 7 AA6 9 THR B 224 MET B 229 -1 N ILE B 228 O VAL B 236 SHEET 8 AA6 9 CYS B 135 PRO B 140 -1 N CYS B 135 O MET B 229 SHEET 9 AA6 9 THR B 196 MET B 199 -1 O THR B 196 N LYS B 138 SHEET 1 AA7 2 LEU B 121 LEU B 126 0 SHEET 2 AA7 2 SER E 153 ILE E 158 -1 O LYS E 154 N GLN B 125 SHEET 1 AA8 4 GLY B 176 SER B 183 0 SHEET 2 AA8 4 GLY B 166 GLY B 173 -1 N PHE B 169 O ILE B 180 SHEET 3 AA8 4 ALA B 157 CYS B 162 -1 N SER B 161 O LYS B 168 SHEET 4 AA8 4 VAL B 203 ALA B 208 -1 O LEU B 205 N ILE B 160 SHEET 1 AA9 5 THR C 59 CYS C 62 0 SHEET 2 AA9 5 PHE C 2 LEU C 6 -1 N ARG C 5 O THR C 59 SHEET 3 AA9 5 ILE C 87 ALA C 92 -1 O ILE C 88 N LEU C 6 SHEET 4 AA9 5 THR C 98 GLU C 104 -1 O GLU C 104 N ILE C 87 SHEET 5 AA9 5 VAL C 111 LYS C 117 -1 O MET C 116 N LEU C 99 SHEET 1 AB1 9 LEU C 66 ASN C 71 0 SHEET 2 AB1 9 GLU C 25 ILE C 30 -1 N ALA C 26 O VAL C 70 SHEET 3 AB1 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 AB1 9 SER C 46 ARG C 53 -1 O LEU C 50 N LEU C 37 SHEET 5 AB1 9 GLY C 245 LEU C 251 -1 O TYR C 250 N LEU C 47 SHEET 6 AB1 9 LEU C 235 ILE C 241 -1 N VAL C 237 O TYR C 249 SHEET 7 AB1 9 THR C 224 MET C 229 -1 N THR C 226 O GLU C 238 SHEET 8 AB1 9 CYS C 135 PRO C 140 -1 N CYS C 135 O MET C 229 SHEET 9 AB1 9 THR C 196 MET C 199 -1 O THR C 196 N LYS C 138 SHEET 1 AB2 2 LEU C 121 LEU C 126 0 SHEET 2 AB2 2 SER F 153 ILE F 158 -1 O ARG F 156 N VAL C 123 SHEET 1 AB3 4 GLY C 176 SER C 183 0 SHEET 2 AB3 4 GLY C 166 GLY C 173 -1 N VAL C 167 O LEU C 182 SHEET 3 AB3 4 ALA C 157 CYS C 162 -1 N VAL C 159 O SER C 170 SHEET 4 AB3 4 VAL C 203 ALA C 208 -1 O VAL C 203 N CYS C 162 CRYST1 143.295 143.295 41.402 90.00 90.00 120.00 P 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006979 0.004029 0.000000 0.00000 SCALE2 0.000000 0.008058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024153 0.00000