PDB Short entry for 5E5P HEADER HYDROLASE 09-OCT-15 5E5P TITLE WILD TYPE I-SMAMI IN THE SPACE GROUP OF C121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: I-SMAMI LAGLIDADG MEGANUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 114-415; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORDARIA MACROSPORA (STRAIN ATCC MYA-333 / DSM SOURCE 3 997 / K(L3346) / K-HELL); SOURCE 4 ORGANISM_TAXID: 771870; SOURCE 5 STRAIN: ATCC MYA-333 / DSM 997 / K(L3346) / K-HELL; SOURCE 6 GENE: SMAC_12671; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL+; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D(+) KEYWDS LAGLIDADG, I-SMAMI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SHEN REVDAT 6 13-MAR-24 5E5P 1 SOURCE REVDAT 5 27-SEP-23 5E5P 1 REMARK REVDAT 4 25-DEC-19 5E5P 1 REMARK REVDAT 3 13-SEP-17 5E5P 1 JRNL REMARK REVDAT 2 10-FEB-16 5E5P 1 JRNL REVDAT 1 13-JAN-16 5E5P 0 JRNL AUTH B.W.SHEN,A.LAMBERT,B.C.WALKER,B.L.STODDARD,B.K.KAISER JRNL TITL THE STRUCTURAL BASIS OF ASYMMETRY IN DNA BINDING AND JRNL TITL 2 CLEAVAGE AS EXHIBITED BY THE I-SMAMI LAGLIDADG MEGANUCLEASE. JRNL REF J.MOL.BIOL. V. 428 206 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26705195 JRNL DOI 10.1016/J.JMB.2015.12.005 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 9875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2424 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2394 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3255 ; 2.105 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5531 ; 1.098 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 8.206 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.844 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;18.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 549 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 1.283 ; 1.950 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1178 ; 1.282 ; 1.946 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1472 ; 2.284 ; 2.915 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1473 ; 2.283 ; 2.919 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 0.997 ; 2.066 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1245 ; 0.997 ; 2.066 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1784 ; 1.782 ; 3.021 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2712 ; 3.604 ;14.871 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2713 ; 3.603 ;14.884 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7108 -24.5672 15.7675 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.0130 REMARK 3 T33: 0.0661 T12: -0.0085 REMARK 3 T13: -0.0151 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.0782 L22: 1.5358 REMARK 3 L33: 1.8575 L12: -0.9463 REMARK 3 L13: -1.3542 L23: 0.9836 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.0657 S13: -0.1519 REMARK 3 S21: -0.0889 S22: -0.0113 S23: 0.1071 REMARK 3 S31: -0.0041 S32: -0.0472 S33: 0.0366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 70 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 27.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8K, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.16350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.16350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 300 REMARK 465 ARG A 301 REMARK 465 LEU A 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 535 4456 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 209 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 31.66 -86.13 REMARK 500 ASN A 73 -65.89 48.78 REMARK 500 ASN A 139 -116.98 55.02 REMARK 500 GLN A 152 31.10 -76.46 REMARK 500 GLU A 160 69.44 65.87 REMARK 500 ASN A 162 158.08 -0.71 REMARK 500 ASN A 163 100.27 -46.18 REMARK 500 ASP A 210 40.33 -87.34 REMARK 500 LYS A 248 -55.30 -126.80 REMARK 500 LYS A 279 60.48 -115.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E5O RELATED DB: PDB REMARK 900 RELATED ID: 5E5S RELATED DB: PDB REMARK 900 RELATED ID: 5E63 RELATED DB: PDB REMARK 900 RELATED ID: 5E67 RELATED DB: PDB REMARK 900 RELATED ID: 4LOX RELATED DB: PDB DBREF 5E5P A 1 302 UNP F7WD42 F7WD42_SORMK 114 415 SEQADV 5E5P ASN A 165 UNP F7WD42 LEU 278 CONFLICT SEQADV 5E5P GLN A 267 UNP F7WD42 MET 380 CONFLICT SEQRES 1 A 302 SER LYS GLY GLU ASN SER LYS LEU ASN PRO TRP ALA VAL SEQRES 2 A 302 VAL GLY PHE ILE ASP ALA GLU GLY SER PHE MET VAL ARG SEQRES 3 A 302 VAL ARG LYS ASN SER LYS TYR LYS THR GLY TRP LEU VAL SEQRES 4 A 302 VAL ALA ILE PHE SER VAL THR VAL ASP LYS LYS ASP LEU SEQRES 5 A 302 PHE LEU LEU GLU SER LEU LYS THR PHE PHE GLY GLY LEU SEQRES 6 A 302 GLY SER ILE LYS LYS SER GLY ASN SER THR PHE SER TYR SEQRES 7 A 302 ARG ILE GLU SER SER GLU GLN LEU THR LYS ILE ILE LEU SEQRES 8 A 302 PRO PHE PHE ASP LYS TYR SER LEU ILE THR GLU LYS LEU SEQRES 9 A 302 GLY ASP TYR LEU LEU PHE LYS LYS VAL LEU GLU LEU MET SEQRES 10 A 302 GLY THR LYS GLU HIS LEU THR GLN ARG GLY LEU GLU LYS SEQRES 11 A 302 ILE VAL SER LEU LYS ALA SER ILE ASN LYS GLY LEU SER SEQRES 12 A 302 GLU GLU LEU GLN ALA ALA PHE PRO GLN CYS VAL PRO THR SEQRES 13 A 302 PRO ARG PRO GLU ILE ASN ASN LYS ASN ILE PRO ASP PRO SEQRES 14 A 302 PHE TRP LEU ALA GLY PHE VAL SER GLY ASP GLY SER PHE SEQRES 15 A 302 LYS SER ILE LEU LYS LYS SER GLU SER ILE LYS VAL GLY SEQRES 16 A 302 PHE GLN SER ILE LEU VAL PHE GLN ILE THR GLN HIS ALA SEQRES 17 A 302 ARG ASP VAL LYS LEU MET GLU SER LEU ILE SER TYR LEU SEQRES 18 A 302 GLY CYS GLY PHE ILE GLU LYS ASP SER ARG GLY PRO TRP SEQRES 19 A 302 LEU TYR TYR THR VAL THR ASN PHE SER ASP ILE GLN GLY SEQRES 20 A 302 LYS ILE ILE PRO PHE PHE HIS GLN TYR LYS ILE ILE GLY SEQRES 21 A 302 SER LYS TYR GLY ASP TYR GLN ASP TRP CYS LYS ILE ALA SEQRES 22 A 302 LEU ILE MET GLN ASN LYS ASN HIS LEU THR PRO GLU GLY SEQRES 23 A 302 LEU ASN GLU ILE ARG ALA LEU LYS GLY GLY MET ASN LYS SEQRES 24 A 302 GLY ARG LEU HET PG0 A 401 8 HET EDO A 402 4 HET EDO A 403 4 HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM EDO 1,2-ETHANEDIOL HETSYN PG0 PEG 6000 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PG0 C5 H12 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *84(H2 O) HELIX 1 AA1 ASN A 9 GLY A 21 1 13 HELIX 2 AA2 ASP A 51 PHE A 62 1 12 HELIX 3 AA3 SER A 82 ILE A 89 1 8 HELIX 4 AA4 ILE A 89 ASP A 95 1 7 HELIX 5 AA5 GLU A 102 THR A 119 1 18 HELIX 6 AA6 LYS A 120 LEU A 123 5 4 HELIX 7 AA7 THR A 124 SER A 137 1 14 HELIX 8 AA8 SER A 143 PHE A 150 1 8 HELIX 9 AA9 ASP A 168 ASP A 179 1 12 HELIX 10 AB1 ASP A 210 LEU A 221 1 12 HELIX 11 AB2 ASN A 241 LYS A 248 1 8 HELIX 12 AB3 LYS A 248 TYR A 256 1 9 HELIX 13 AB4 LYS A 262 LYS A 279 1 18 HELIX 14 AB5 THR A 283 GLY A 295 1 13 SHEET 1 AA1 4 SER A 22 LYS A 29 0 SHEET 2 AA1 4 TRP A 37 ASP A 48 -1 O VAL A 40 N ARG A 26 SHEET 3 AA1 4 THR A 75 ILE A 80 -1 O TYR A 78 N VAL A 45 SHEET 4 AA1 4 SER A 67 GLY A 72 -1 N LYS A 69 O SER A 77 SHEET 1 AA2 4 GLY A 180 LYS A 188 0 SHEET 2 AA2 4 PHE A 196 HIS A 207 -1 O VAL A 201 N LYS A 183 SHEET 3 AA2 4 TRP A 234 VAL A 239 -1 O TYR A 237 N ILE A 204 SHEET 4 AA2 4 PHE A 225 LYS A 228 -1 N GLU A 227 O TYR A 236 SITE 1 AC1 6 MET A 24 VAL A 25 ARG A 26 LYS A 135 SITE 2 AC1 6 GLY A 141 HOH A 552 SITE 1 AC2 2 ARG A 26 ARG A 79 SITE 1 AC3 2 TRP A 11 LYS A 96 CRYST1 148.327 58.230 42.046 90.00 96.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006742 0.000000 0.000718 0.00000 SCALE2 0.000000 0.017173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023918 0.00000