PDB Short entry for 5E6P HEADER SIGNALING PROTEIN 10-OCT-15 5E6P TITLE PLEXINB2 CYTOPLASMIC REGION/PDZ-RHOGEF PDZ DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEXIN-B2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1226-1842; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 42-125); COMPND 10 SYNONYM: PDZ-RHOGEF; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLXNB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKB2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ARHGEF11, KIAA0380; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSKB2 KEYWDS PLEXIN, PDZ, PDZ-RHOGEF, COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.G.PASCOE,X.ZHANG REVDAT 4 25-DEC-19 5E6P 1 REMARK REVDAT 3 27-SEP-17 5E6P 1 JRNL REMARK REVDAT 2 16-DEC-15 5E6P 1 JRNL REVDAT 1 18-NOV-15 5E6P 0 JRNL AUTH H.G.PASCOE,S.GUTOWSKI,H.CHEN,C.A.BRAUTIGAM,Z.CHEN, JRNL AUTH 2 P.C.STERNWEIS,X.ZHANG JRNL TITL SECONDARY PDZ DOMAIN-BINDING SITE ON CLASS B PLEXINS JRNL TITL 2 ENHANCES THE AFFINITY FOR PDZ-RHOGEF. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 14852 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26627240 JRNL DOI 10.1073/PNAS.1508931112 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 14538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5367 - 5.4955 1.00 3386 178 0.2237 0.2578 REMARK 3 2 5.4955 - 4.3629 0.97 3113 147 0.2662 0.3040 REMARK 3 3 4.3629 - 3.8116 0.86 2696 157 0.2738 0.3307 REMARK 3 4 3.8116 - 3.4632 0.75 2346 121 0.3563 0.4263 REMARK 3 5 3.4632 - 3.2150 0.73 2266 128 0.3987 0.4579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 130.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4563 REMARK 3 ANGLE : 0.754 6206 REMARK 3 CHIRALITY : 0.052 744 REMARK 3 PLANARITY : 0.003 776 REMARK 3 DIHEDRAL : 12.548 1610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1461:1598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.1313 -16.0781 -0.6129 REMARK 3 T TENSOR REMARK 3 T11: 1.1488 T22: 0.9226 REMARK 3 T33: 1.2766 T12: -0.2824 REMARK 3 T13: -0.3087 T23: 0.2158 REMARK 3 L TENSOR REMARK 3 L11: 3.6882 L22: 0.7827 REMARK 3 L33: 2.7414 L12: -1.2270 REMARK 3 L13: 0.1352 L23: 0.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.5959 S12: 0.6178 S13: -0.3774 REMARK 3 S21: 0.0893 S22: -0.4276 S23: -0.3405 REMARK 3 S31: 0.3168 S32: -0.2526 S33: -0.2310 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 1275:1459 OR RESID 1622:1836 ) REMARK 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.4092 -30.9936 32.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.5385 T22: 0.6526 REMARK 3 T33: 1.1529 T12: 0.0430 REMARK 3 T13: 0.0481 T23: 0.1898 REMARK 3 L TENSOR REMARK 3 L11: 3.3888 L22: 2.9574 REMARK 3 L33: 6.1710 L12: -0.2037 REMARK 3 L13: -2.2544 L23: -0.9213 REMARK 3 S TENSOR REMARK 3 S11: -0.4244 S12: -0.2560 S13: -1.0401 REMARK 3 S21: 0.0682 S22: -0.0598 S23: -0.1982 REMARK 3 S31: 0.3410 S32: 0.7415 S33: 0.4349 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1837:1842 ) OR ( CHAIN B AND REMARK 3 RESID 45:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.5984 -48.6054 52.0995 REMARK 3 T TENSOR REMARK 3 T11: 1.0589 T22: 1.4547 REMARK 3 T33: 2.1447 T12: -0.0298 REMARK 3 T13: 0.7121 T23: 0.4572 REMARK 3 L TENSOR REMARK 3 L11: 4.7837 L22: 3.8408 REMARK 3 L33: 3.3247 L12: -0.1079 REMARK 3 L13: -0.0840 L23: 0.6569 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.6692 S13: -1.2952 REMARK 3 S21: -0.2162 S22: -1.0973 S23: 0.5083 REMARK 3 S31: -0.2025 S32: -0.6088 S33: 0.3177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979237 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16847 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 30.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 56.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K/NA TARTRATE, 0.1 M NA CITRATE REMARK 280 PH 5.3, 1.4 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.97667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.48833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 140.97667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.48833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.97667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.48833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.97667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.48833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1222 REMARK 465 PRO A 1223 REMARK 465 HIS A 1224 REMARK 465 MET A 1225 REMARK 465 ARG A 1226 REMARK 465 LYS A 1227 REMARK 465 SER A 1228 REMARK 465 GLN A 1229 REMARK 465 GLN A 1230 REMARK 465 ALA A 1231 REMARK 465 GLU A 1232 REMARK 465 ARG A 1233 REMARK 465 GLU A 1234 REMARK 465 TYR A 1235 REMARK 465 GLU A 1236 REMARK 465 LYS A 1237 REMARK 465 ILE A 1238 REMARK 465 LYS A 1239 REMARK 465 SER A 1240 REMARK 465 GLN A 1241 REMARK 465 LEU A 1242 REMARK 465 GLU A 1243 REMARK 465 GLY A 1244 REMARK 465 LEU A 1245 REMARK 465 GLU A 1246 REMARK 465 GLU A 1247 REMARK 465 SER A 1248 REMARK 465 VAL A 1249 REMARK 465 ARG A 1250 REMARK 465 ASP A 1251 REMARK 465 ARG A 1252 REMARK 465 CYS A 1253 REMARK 465 LYS A 1254 REMARK 465 LYS A 1255 REMARK 465 GLU A 1256 REMARK 465 PHE A 1257 REMARK 465 THR A 1258 REMARK 465 ASP A 1259 REMARK 465 LEU A 1260 REMARK 465 MET A 1261 REMARK 465 ILE A 1262 REMARK 465 GLU A 1263 REMARK 465 MET A 1264 REMARK 465 GLU A 1265 REMARK 465 ASP A 1266 REMARK 465 GLN A 1267 REMARK 465 THR A 1268 REMARK 465 ASN A 1269 REMARK 465 ASP A 1270 REMARK 465 VAL A 1271 REMARK 465 HIS A 1272 REMARK 465 GLU A 1273 REMARK 465 ALA A 1274 REMARK 465 ASP A 1460 REMARK 465 GLU A 1476 REMARK 465 GLY A 1477 REMARK 465 ALA A 1527 REMARK 465 GLY A 1541 REMARK 465 ARG A 1542 REMARK 465 GLY A 1566 REMARK 465 VAL A 1567 REMARK 465 SER A 1568 REMARK 465 GLN A 1569 REMARK 465 GLN A 1570 REMARK 465 PRO A 1571 REMARK 465 GLU A 1572 REMARK 465 ASP A 1573 REMARK 465 SER A 1574 REMARK 465 GLN A 1575 REMARK 465 GLN A 1576 REMARK 465 ASP A 1577 REMARK 465 LEU A 1578 REMARK 465 PRO A 1579 REMARK 465 GLY A 1580 REMARK 465 GLU A 1581 REMARK 465 ARG A 1582 REMARK 465 HIS A 1583 REMARK 465 ALA A 1584 REMARK 465 LEU A 1585 REMARK 465 LEU A 1586 REMARK 465 GLU A 1587 REMARK 465 GLU A 1588 REMARK 465 GLU A 1589 REMARK 465 ASN A 1590 REMARK 465 THR A 1599 REMARK 465 ASP A 1600 REMARK 465 GLU A 1601 REMARK 465 VAL A 1602 REMARK 465 ASP A 1603 REMARK 465 GLU A 1604 REMARK 465 GLY A 1605 REMARK 465 LYS A 1606 REMARK 465 SER A 1607 REMARK 465 LYS A 1608 REMARK 465 ARG A 1609 REMARK 465 GLY A 1610 REMARK 465 SER A 1611 REMARK 465 MET A 1612 REMARK 465 LYS A 1613 REMARK 465 GLU A 1614 REMARK 465 LYS A 1615 REMARK 465 GLU A 1616 REMARK 465 ARG A 1617 REMARK 465 THR A 1618 REMARK 465 LYS A 1619 REMARK 465 ALA A 1620 REMARK 465 ILE A 1621 REMARK 465 PRO A 1650 REMARK 465 GLY A 1651 REMARK 465 GLU A 1731 REMARK 465 HIS A 1732 REMARK 465 LYS A 1733 REMARK 465 LEU A 1734 REMARK 465 SER A 1735 REMARK 465 ARG A 1736 REMARK 465 ASP A 1737 REMARK 465 SER A 1738 REMARK 465 GLY B 38 REMARK 465 PRO B 39 REMARK 465 HIS B 40 REMARK 465 MET B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 VAL B 44 REMARK 465 ALA B 81 REMARK 465 GLY B 82 REMARK 465 SER B 122 REMARK 465 SER B 123 REMARK 465 PRO B 124 REMARK 465 SER B 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1294 CG CD CE NZ REMARK 470 ASP A1295 CG OD1 OD2 REMARK 470 ASP A1297 CG OD1 OD2 REMARK 470 LYS A1298 CG CD CE NZ REMARK 470 LYS A1305 CG CD CE NZ REMARK 470 ARG A1312 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1344 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1383 CG CD OE1 NE2 REMARK 470 LYS A1388 CG CD CE NZ REMARK 470 LYS A1391 CG CD CE NZ REMARK 470 ARG A1395 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1396 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1398 CG CD OE1 OE2 REMARK 470 ASP A1475 CG OD1 OD2 REMARK 470 ASP A1479 CG OD1 OD2 REMARK 470 LYS A1513 CG CD CE NZ REMARK 470 SER A1525 OG REMARK 470 THR A1526 OG1 CG2 REMARK 470 ASP A1534 CG OD1 OD2 REMARK 470 GLU A1540 CG CD OE1 OE2 REMARK 470 LYS A1544 CG CD CE NZ REMARK 470 VAL A1565 CG1 CG2 REMARK 470 ARG A1591 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1623 CG CD OE1 OE2 REMARK 470 TYR A1625 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A1652 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A1670 CG CD OE1 OE2 REMARK 470 ASP A1673 CG OD1 OD2 REMARK 470 ARG A1675 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1677 CG CD OE1 OE2 REMARK 470 GLU A1710 CG CD OE1 OE2 REMARK 470 ARG A1729 CG CD NE CZ NH1 NH2 REMARK 470 THR A1730 OG1 CG2 REMARK 470 LYS A1742 CG CD CE NZ REMARK 470 LYS A1747 CG CD CE NZ REMARK 470 LYS A1754 CG CD CE NZ REMARK 470 LYS A1761 CG CD CE NZ REMARK 470 GLN A1765 CG CD OE1 NE2 REMARK 470 GLN A1768 CG CD OE1 NE2 REMARK 470 LYS A1821 CG CD CE NZ REMARK 470 GLN A1823 CG CD OE1 NE2 REMARK 470 ASP A1841 CG OD1 OD2 REMARK 470 GLN B 51 CG CD OE1 NE2 REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 1509 OD1 ASP A 1787 12545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1292 53.68 -98.70 REMARK 500 SER A1293 -167.45 -106.55 REMARK 500 ASP A1299 -83.75 -85.24 REMARK 500 LYS A1305 36.38 -78.14 REMARK 500 GLU A1345 71.38 -64.77 REMARK 500 PHE A1346 84.79 -153.93 REMARK 500 VAL A1386 44.87 -97.10 REMARK 500 ALA A1387 -104.18 -108.50 REMARK 500 ASP A1419 -80.22 -97.51 REMARK 500 PRO A1466 94.38 -68.05 REMARK 500 HIS A1594 -61.03 -108.83 REMARK 500 ASP A1673 18.12 54.55 REMARK 500 PHE A1692 -63.62 -128.27 REMARK 500 ALA A1746 -68.89 -96.66 REMARK 500 ASN A1837 -76.57 -87.19 REMARK 500 ASP B 64 -72.65 -127.47 REMARK 500 GLN B 70 -65.77 -102.30 REMARK 500 VAL B 97 33.53 -97.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 5E6P A 1226 1842 UNP B2RXS4 PLXB2_MOUSE 1226 1842 DBREF 5E6P B 42 125 UNP O15085 ARHGB_HUMAN 42 125 SEQADV 5E6P GLY A 1222 UNP B2RXS4 EXPRESSION TAG SEQADV 5E6P PRO A 1223 UNP B2RXS4 EXPRESSION TAG SEQADV 5E6P HIS A 1224 UNP B2RXS4 EXPRESSION TAG SEQADV 5E6P MET A 1225 UNP B2RXS4 EXPRESSION TAG SEQADV 5E6P GLY B 38 UNP O15085 EXPRESSION TAG SEQADV 5E6P PRO B 39 UNP O15085 EXPRESSION TAG SEQADV 5E6P HIS B 40 UNP O15085 EXPRESSION TAG SEQADV 5E6P MET B 41 UNP O15085 EXPRESSION TAG SEQRES 1 A 621 GLY PRO HIS MET ARG LYS SER GLN GLN ALA GLU ARG GLU SEQRES 2 A 621 TYR GLU LYS ILE LYS SER GLN LEU GLU GLY LEU GLU GLU SEQRES 3 A 621 SER VAL ARG ASP ARG CYS LYS LYS GLU PHE THR ASP LEU SEQRES 4 A 621 MET ILE GLU MET GLU ASP GLN THR ASN ASP VAL HIS GLU SEQRES 5 A 621 ALA GLY ILE PRO THR LEU ASP TYR LYS THR TYR THR ASP SEQRES 6 A 621 ARG VAL PHE PHE LEU PRO SER LYS ASP GLY ASP LYS ASP SEQRES 7 A 621 VAL MET ILE THR GLY LYS LEU ASP ILE PRO GLU SER ARG SEQRES 8 A 621 ARG PRO ILE VAL GLU GLN ALA LEU TYR GLN PHE SER ASN SEQRES 9 A 621 LEU LEU ASN SER LYS SER PHE LEU ILE ASN PHE ILE HIS SEQRES 10 A 621 THR LEU GLU ASN GLN ARG GLU PHE SER ALA ARG ALA LYS SEQRES 11 A 621 VAL TYR PHE ALA SER LEU LEU THR VAL ALA LEU HIS GLY SEQRES 12 A 621 LYS LEU GLU TYR TYR THR ASP ILE MET ARG THR LEU PHE SEQRES 13 A 621 LEU GLU LEU MET GLU GLN TYR VAL VAL ALA LYS ASN PRO SEQRES 14 A 621 LYS LEU MET LEU ARG ARG SER GLU THR VAL VAL GLU ARG SEQRES 15 A 621 MET LEU SER ASN TRP MET SER ILE CYS LEU TYR GLN TYR SEQRES 16 A 621 LEU LYS ASP SER ALA GLY GLU PRO LEU TYR LYS LEU PHE SEQRES 17 A 621 LYS ALA ILE LYS HIS GLN VAL GLU LYS GLY PRO VAL ASP SEQRES 18 A 621 ALA VAL GLN LYS LYS ALA LYS TYR THR LEU ASN ASP THR SEQRES 19 A 621 GLY LEU LEU GLY ASP ASP VAL GLU TYR ALA PRO LEU THR SEQRES 20 A 621 VAL SER VAL ILE VAL GLN ASP GLU GLY ILE ASP ALA ILE SEQRES 21 A 621 PRO VAL LYS VAL LEU ASN CYS ASP THR ILE SER GLN VAL SEQRES 22 A 621 LYS GLU LYS ILE ILE ASP GLN VAL TYR ARG THR GLN PRO SEQRES 23 A 621 CYS SER CYS TRP PRO LYS PRO ASP SER VAL VAL LEU GLU SEQRES 24 A 621 TRP ARG PRO GLY SER THR ALA GLN ILE LEU SER ASP LEU SEQRES 25 A 621 ASP LEU THR SER GLN ARG GLU GLY ARG TRP LYS ARG ILE SEQRES 26 A 621 ASN THR LEU MET HIS TYR ASN VAL ARG ASP GLY ALA THR SEQRES 27 A 621 LEU ILE LEU SER LYS VAL GLY VAL SER GLN GLN PRO GLU SEQRES 28 A 621 ASP SER GLN GLN ASP LEU PRO GLY GLU ARG HIS ALA LEU SEQRES 29 A 621 LEU GLU GLU GLU ASN ARG VAL TRP HIS LEU VAL ARG PRO SEQRES 30 A 621 THR ASP GLU VAL ASP GLU GLY LYS SER LYS ARG GLY SER SEQRES 31 A 621 MET LYS GLU LYS GLU ARG THR LYS ALA ILE THR GLU ILE SEQRES 32 A 621 TYR LEU THR ARG LEU LEU SER VAL LYS GLY THR LEU GLN SEQRES 33 A 621 GLN PHE VAL ASP ASN PHE PHE GLN SER VAL LEU ALA PRO SEQRES 34 A 621 GLY HIS ALA VAL PRO PRO ALA VAL LYS TYR PHE PHE ASP SEQRES 35 A 621 PHE LEU ASP GLU GLN ALA GLU LYS HIS ASP ILE ARG ASP SEQRES 36 A 621 GLU ASP THR ILE HIS ILE TRP LYS THR ASN SER LEU PRO SEQRES 37 A 621 LEU ARG PHE TRP VAL ASN ILE LEU LYS ASN PRO HIS PHE SEQRES 38 A 621 ILE PHE ASP VAL HIS VAL HIS GLU VAL VAL ASP ALA SER SEQRES 39 A 621 LEU SER VAL ILE ALA GLN THR PHE MET ASP ALA CYS THR SEQRES 40 A 621 ARG THR GLU HIS LYS LEU SER ARG ASP SER PRO SER ASN SEQRES 41 A 621 LYS LEU LEU TYR ALA LYS GLU ILE SER THR TYR LYS LYS SEQRES 42 A 621 MET VAL GLU ASP TYR TYR LYS GLY ILE ARG GLN MET VAL SEQRES 43 A 621 GLN VAL SER ASP GLN ASP MET ASN THR HIS LEU ALA GLU SEQRES 44 A 621 ILE SER ARG ALA HIS THR ASP SER LEU ASN THR LEU VAL SEQRES 45 A 621 ALA LEU HIS GLN LEU TYR GLN TYR THR GLN LYS TYR TYR SEQRES 46 A 621 ASP GLU ILE ILE ASN ALA LEU GLU GLU ASP PRO ALA ALA SEQRES 47 A 621 GLN LYS MET GLN LEU ALA PHE ARG LEU GLN GLN ILE ALA SEQRES 48 A 621 ALA ALA LEU GLU ASN LYS VAL THR ASP LEU SEQRES 1 B 88 GLY PRO HIS MET GLY LEU VAL GLN ARG CYS VAL ILE ILE SEQRES 2 B 88 GLN LYS ASP GLN HIS GLY PHE GLY PHE THR VAL SER GLY SEQRES 3 B 88 ASP ARG ILE VAL LEU VAL GLN SER VAL ARG PRO GLY GLY SEQRES 4 B 88 ALA ALA MET LYS ALA GLY VAL LYS GLU GLY ASP ARG ILE SEQRES 5 B 88 ILE LYS VAL ASN GLY THR MET VAL THR ASN SER SER HIS SEQRES 6 B 88 LEU GLU VAL VAL LYS LEU ILE LYS SER GLY ALA TYR VAL SEQRES 7 B 88 ALA LEU THR LEU LEU GLY SER SER PRO SER HELIX 1 AA1 ASP A 1280 LEU A 1291 1 12 HELIX 2 AA2 ARG A 1312 ASN A 1328 1 17 HELIX 3 AA3 SER A 1329 GLN A 1343 1 15 HELIX 4 AA4 SER A 1347 LEU A 1362 1 16 HELIX 5 AA5 LYS A 1365 VAL A 1386 1 22 HELIX 6 AA6 THR A 1399 LEU A 1413 1 15 HELIX 7 AA7 LEU A 1413 LYS A 1418 1 6 HELIX 8 AA8 ALA A 1421 LYS A 1438 1 18 HELIX 9 AA9 THR A 1490 TYR A 1503 1 14 HELIX 10 AB1 PRO A 1507 TRP A 1511 5 5 HELIX 11 AB2 GLU A 1623 LEU A 1648 1 26 HELIX 12 AB3 PRO A 1655 HIS A 1672 1 18 HELIX 13 AB4 ASP A 1676 LEU A 1688 1 13 HELIX 14 AB5 PHE A 1692 ASN A 1699 1 8 HELIX 15 AB6 PRO A 1700 ILE A 1703 5 4 HELIX 16 AB7 HIS A 1709 ALA A 1726 1 18 HELIX 17 AB8 SER A 1740 TYR A 1745 1 6 HELIX 18 AB9 ALA A 1746 GLN A 1765 1 20 HELIX 19 AC1 SER A 1770 THR A 1786 1 17 HELIX 20 AC2 ASP A 1787 LEU A 1789 5 3 HELIX 21 AC3 ASN A 1790 TYR A 1805 1 16 HELIX 22 AC4 TYR A 1805 ASP A 1816 1 12 HELIX 23 AC5 ASP A 1816 MET A 1822 1 7 HELIX 24 AC6 GLN A 1823 LEU A 1835 1 13 HELIX 25 AC7 SER B 101 SER B 111 1 11 SHEET 1 AA1 5 ASP A1479 LEU A1486 0 SHEET 2 AA1 5 PRO A1466 GLN A1474 -1 N VAL A1471 O ILE A1481 SHEET 3 AA1 5 THR A1559 SER A1563 1 O LEU A1560 N SER A1470 SHEET 4 AA1 5 VAL A1518 TRP A1521 -1 N VAL A1518 O SER A1563 SHEET 5 AA1 5 ILE A1529 LEU A1530 -1 O LEU A1530 N LEU A1519 SHEET 1 AA2 2 LYS A1544 ARG A1545 0 SHEET 2 AA2 2 VAL A1592 TRP A1593 1 O TRP A1593 N LYS A1544 SHEET 1 AA3 3 VAL A1839 ASP A1841 0 SHEET 2 AA3 3 PHE B 59 SER B 62 -1 O VAL B 61 N THR A1840 SHEET 3 AA3 3 LEU B 68 VAL B 72 -1 O LEU B 68 N SER B 62 SHEET 1 AA4 4 ARG B 46 ILE B 50 0 SHEET 2 AA4 4 VAL B 115 LEU B 120 -1 O LEU B 117 N VAL B 48 SHEET 3 AA4 4 ARG B 88 VAL B 92 -1 N LYS B 91 O THR B 118 SHEET 4 AA4 4 THR B 95 MET B 96 -1 O THR B 95 N VAL B 92 CRYST1 126.152 126.152 211.465 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007927 0.004577 0.000000 0.00000 SCALE2 0.000000 0.009153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004729 0.00000