PDB Short entry for 5E8R HEADER TRANSFERASE 14-OCT-15 5E8R TITLE HUMAN HMT1 HNRNP METHYLTRANSFERASE-LIKE PROTEIN 6 (S. CEREVISIAE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 6,HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 6 EC: 2.1.1.-,2.1.1.125; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS HRMT1L6, MS-023, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,J.LIU,W.TEMPEL,A.SEITOVA,A.HUTCHINSON,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.JIN,P.J.BROWN,H.WU,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 06-MAR-24 5E8R 1 REMARK REVDAT 3 24-JAN-18 5E8R 1 AUTHOR REMARK REVDAT 2 30-MAR-16 5E8R 1 JRNL REVDAT 1 09-DEC-15 5E8R 0 JRNL AUTH M.S.ERAM,Y.SHEN,M.M.SZEWCZYK,H.WU,G.SENISTERRA,F.LI, JRNL AUTH 2 K.V.BUTLER,H.U.KANISKAN,B.A.SPEED,C.DELA SENA,A.DONG,H.ZENG, JRNL AUTH 3 M.SCHAPIRA,P.J.BROWN,C.H.ARROWSMITH,D.BARSYTE-LOVEJOY,J.LIU, JRNL AUTH 4 M.VEDADI,J.JIN JRNL TITL A POTENT, SELECTIVE, AND CELL-ACTIVE INHIBITOR OF HUMAN TYPE JRNL TITL 2 I PROTEIN ARGININE METHYLTRANSFERASES. JRNL REF ACS CHEM.BIOL. V. 11 772 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 26598975 JRNL DOI 10.1021/ACSCHEMBIO.5B00839 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.499 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5349 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5018 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7281 ; 1.182 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11461 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 5.528 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;35.146 ;22.661 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;12.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;14.136 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 810 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6205 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2692 ; 0.887 ; 2.613 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2693 ; 0.887 ; 2.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3366 ; 1.606 ; 3.913 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5E8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000213888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.2M MGCL2, 0.1M SODIUM REMARK 280 CACADYLATE, PH6.5, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.93400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.40100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.46700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 GLU A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 465 THR A 39 REMARK 465 LYS A 40 REMARK 465 ARG A 41 REMARK 465 GLU A 300 REMARK 465 SER A 301 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 THR B 21 REMARK 465 GLU B 22 REMARK 465 GLU B 23 REMARK 465 GLU B 24 REMARK 465 ASP B 25 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 ARG B 29 REMARK 465 GLU B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 LEU B 33 REMARK 465 GLU B 34 REMARK 465 ARG B 35 REMARK 465 PRO B 36 REMARK 465 ARG B 37 REMARK 465 ARG B 38 REMARK 465 THR B 39 REMARK 465 GLU B 300 REMARK 465 SER B 301 REMARK 465 ASP B 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 71 NH1 REMARK 470 GLU A 122 CD OE1 OE2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 GLU A 144 CD OE1 OE2 REMARK 470 ARG A 174 NH1 NH2 REMARK 470 MET A 200 CG SD CE REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLN A 213 CD OE1 NE2 REMARK 470 HIS A 233 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 234 OG REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG A 249 CD NE CZ NH1 NH2 REMARK 470 GLU A 257 OE1 OE2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 VAL A 329 CG1 CG2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 348 CG OD1 OD2 REMARK 470 LEU A 356 CD1 CD2 REMARK 470 ARG A 358 CD NE CZ NH1 NH2 REMARK 470 GLU A 366 CD OE1 OE2 REMARK 470 ASP A 375 CG OD1 OD2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 GLN B 45 CG CD OE1 NE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 GLU B 122 CD OE1 OE2 REMARK 470 ARG B 125 NE CZ NH1 NH2 REMARK 470 ASP B 131 CG OD1 OD2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 GLN B 213 CD OE1 NE2 REMARK 470 GLU B 235 OE1 OE2 REMARK 470 ARG B 249 NE CZ NH1 NH2 REMARK 470 GLU B 264 CD OE1 OE2 REMARK 470 GLN B 265 CG CD OE1 NE2 REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 LYS B 319 CE NZ REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 348 CG OD1 OD2 REMARK 470 ASP B 363 CG OD1 OD2 REMARK 470 GLU B 365 CG CD OE1 OE2 REMARK 470 LYS B 367 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT SAH B 1001 UNK UNX B 1014 1.69 REMARK 500 OD1 ASP A 150 UNK UNX A 1004 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 93.39 -67.32 REMARK 500 LEU A 161 -56.15 66.24 REMARK 500 GLU A 164 -26.87 87.94 REMARK 500 SER A 234 57.54 -100.97 REMARK 500 LYS A 319 -132.89 56.18 REMARK 500 GLU A 374 124.67 -32.24 REMARK 500 ASP B 63 91.01 -68.46 REMARK 500 ASN B 77 34.24 -92.52 REMARK 500 LEU B 161 -52.62 68.15 REMARK 500 GLU B 164 -23.43 83.15 REMARK 500 LYS B 319 -138.59 57.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5L6 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5L6 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1006 DBREF 5E8R A 1 375 UNP Q96LA8 ANM6_HUMAN 1 375 DBREF 5E8R B 1 375 UNP Q96LA8 ANM6_HUMAN 1 375 SEQADV 5E8R GLY A 0 UNP Q96LA8 EXPRESSION TAG SEQADV 5E8R VAL A 194 UNP Q96LA8 ALA 194 CONFLICT SEQADV 5E8R GLY B 0 UNP Q96LA8 EXPRESSION TAG SEQADV 5E8R VAL B 194 UNP Q96LA8 ALA 194 CONFLICT SEQRES 1 A 376 GLY MET SER GLN PRO LYS LYS ARG LYS LEU GLU SER GLY SEQRES 2 A 376 GLY GLY GLY GLU GLY GLY GLU GLY THR GLU GLU GLU ASP SEQRES 3 A 376 GLY ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO ARG ARG SEQRES 4 A 376 THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU CYS TYR SEQRES 5 A 376 SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP ARG SEQRES 6 A 376 VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU ARG ASN SEQRES 7 A 376 TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL GLY SEQRES 8 A 376 ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN ALA SEQRES 9 A 376 GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA ILE SEQRES 10 A 376 TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN GLY LEU SEQRES 11 A 376 GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU THR SEQRES 12 A 376 VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SER GLU SEQRES 13 A 376 TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SER SEQRES 14 A 376 SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU GLY SEQRES 15 A 376 GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE ILE VAL SEQRES 16 A 376 PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY PHE SEQRES 17 A 376 TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SER SEQRES 18 A 376 CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET GLY HIS SEQRES 19 A 376 SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU ASP VAL SEQRES 20 A 376 LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SER SEQRES 21 A 376 ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY VAL GLY SEQRES 22 A 376 GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO MET SEQRES 23 A 376 HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE PRO GLY SEQRES 24 A 376 GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SER PRO SEQRES 25 A 376 PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU TYR SEQRES 26 A 376 LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR ASP VAL SEQRES 27 A 376 SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP ASN PRO SEQRES 28 A 376 ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL GLY ASP SEQRES 29 A 376 GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP SEQRES 1 B 376 GLY MET SER GLN PRO LYS LYS ARG LYS LEU GLU SER GLY SEQRES 2 B 376 GLY GLY GLY GLU GLY GLY GLU GLY THR GLU GLU GLU ASP SEQRES 3 B 376 GLY ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO ARG ARG SEQRES 4 B 376 THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU CYS TYR SEQRES 5 B 376 SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP ARG SEQRES 6 B 376 VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU ARG ASN SEQRES 7 B 376 TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL GLY SEQRES 8 B 376 ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN ALA SEQRES 9 B 376 GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA ILE SEQRES 10 B 376 TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN GLY LEU SEQRES 11 B 376 GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU THR SEQRES 12 B 376 VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SER GLU SEQRES 13 B 376 TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SER SEQRES 14 B 376 SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU GLY SEQRES 15 B 376 GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE ILE VAL SEQRES 16 B 376 PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY PHE SEQRES 17 B 376 TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SER SEQRES 18 B 376 CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET GLY HIS SEQRES 19 B 376 SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU ASP VAL SEQRES 20 B 376 LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SER SEQRES 21 B 376 ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY VAL GLY SEQRES 22 B 376 GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO MET SEQRES 23 B 376 HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE PRO GLY SEQRES 24 B 376 GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SER PRO SEQRES 25 B 376 PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU TYR SEQRES 26 B 376 LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR ASP VAL SEQRES 27 B 376 SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP ASN PRO SEQRES 28 B 376 ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL GLY ASP SEQRES 29 B 376 GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP HET SAH A1001 26 HET 5L6 A1002 21 HET CL A1003 1 HET UNX A1004 1 HET SAH B1001 26 HET 5L6 B1002 21 HET CL B1003 1 HET CL B1004 1 HET CL B1005 1 HET CL B1006 1 HET UNX B1007 1 HET UNX B1008 1 HET UNX B1009 1 HET UNX B1010 1 HET UNX B1011 1 HET UNX B1012 1 HET UNX B1013 1 HET UNX B1014 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 5L6 N-METHYL-N-({4-[4-(PROPAN-2-YLOXY)PHENYL]-1H-PYRROL-3- HETNAM 2 5L6 YL}METHYL)ETHANE-1,2-DIAMINE HETNAM CL CHLORIDE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 5L6 2(C17 H25 N3 O) FORMUL 5 CL 5(CL 1-) FORMUL 6 UNX 9(X) FORMUL 21 HOH *65(H2 O) HELIX 1 AA1 GLU A 42 CYS A 50 1 9 HELIX 2 AA2 ASP A 53 ASP A 63 1 11 HELIX 3 AA3 ASP A 63 ASN A 77 1 15 HELIX 4 AA4 ASN A 77 ARG A 82 1 6 HELIX 5 AA5 GLY A 94 ALA A 103 1 10 HELIX 6 AA6 ILE A 116 ASN A 127 1 12 HELIX 7 AA7 MET A 166 TRP A 177 1 12 HELIX 8 AA8 ASP A 198 GLY A 216 1 19 HELIX 9 AA9 MET A 219 CYS A 221 5 3 HELIX 10 AB1 LEU A 222 HIS A 233 1 12 HELIX 11 AB2 SER A 242 VAL A 246 5 5 HELIX 12 AB3 GLY A 262 GLY A 270 1 9 HELIX 13 AB4 GLU B 42 SER B 52 1 11 HELIX 14 AB5 ASP B 53 ASP B 63 1 11 HELIX 15 AB6 ASP B 63 ASN B 77 1 15 HELIX 16 AB7 ASN B 77 ARG B 82 1 6 HELIX 17 AB8 GLY B 94 ALA B 103 1 10 HELIX 18 AB9 ILE B 116 ASN B 127 1 12 HELIX 19 AC1 MET B 166 TRP B 177 1 12 HELIX 20 AC2 ASP B 198 PHE B 207 1 10 HELIX 21 AC3 GLN B 210 GLY B 216 1 7 HELIX 22 AC4 MET B 219 CYS B 221 5 3 HELIX 23 AC5 LEU B 222 MET B 231 1 10 HELIX 24 AC6 SER B 242 VAL B 246 5 5 HELIX 25 AC7 GLY B 262 GLY B 270 1 9 SHEET 1 AA1 5 VAL A 133 PRO A 137 0 SHEET 2 AA1 5 ARG A 107 GLU A 112 1 N ALA A 110 O HIS A 134 SHEET 3 AA1 5 THR A 85 VAL A 89 1 N ASP A 88 O TYR A 109 SHEET 4 AA1 5 VAL A 149 VAL A 153 1 O VAL A 153 N LEU A 87 SHEET 5 AA1 5 LEU A 178 LEU A 185 1 O LEU A 183 N ILE A 152 SHEET 1 AA2 9 GLN A 251 GLU A 257 0 SHEET 2 AA2 9 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA2 9 ALA A 283 PHE A 296 -1 O TRP A 291 N PHE A 192 SHEET 4 AA2 9 GLN A 320 VAL A 331 -1 O LEU A 323 N PHE A 288 SHEET 5 AA2 9 GLU A 235 GLN A 239 -1 N VAL A 237 O LEU A 322 SHEET 6 AA2 9 LYS A 367 MET A 373 1 O ALA A 372 N ILE A 236 SHEET 7 AA2 9 LEU A 353 VAL A 361 -1 N TYR A 359 O LYS A 367 SHEET 8 AA2 9 ASP A 336 PRO A 345 -1 N LEU A 344 O ARG A 354 SHEET 9 AA2 9 VAL A 271 SER A 278 -1 N VAL A 271 O LEU A 343 SHEET 1 AA3 4 GLN A 251 GLU A 257 0 SHEET 2 AA3 4 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA3 4 ALA A 283 PHE A 296 -1 O TRP A 291 N PHE A 192 SHEET 4 AA3 4 LEU A 305 SER A 308 -1 O LEU A 305 N PHE A 296 SHEET 1 AA4 5 VAL B 133 PRO B 137 0 SHEET 2 AA4 5 ARG B 107 GLU B 112 1 N VAL B 108 O HIS B 134 SHEET 3 AA4 5 THR B 85 VAL B 89 1 N VAL B 86 O TYR B 109 SHEET 4 AA4 5 VAL B 149 VAL B 153 1 O ALA B 151 N LEU B 87 SHEET 5 AA4 5 LEU B 178 LEU B 185 1 O LEU B 183 N ILE B 152 SHEET 1 AA5 9 GLN B 251 GLU B 257 0 SHEET 2 AA5 9 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA5 9 ALA B 283 PHE B 296 -1 O GLY B 287 N ILE B 196 SHEET 4 AA5 9 GLN B 320 VAL B 331 -1 O LEU B 323 N PHE B 288 SHEET 5 AA5 9 GLU B 235 GLN B 239 -1 N VAL B 237 O LEU B 322 SHEET 6 AA5 9 LYS B 367 MET B 373 1 O ALA B 372 N ILE B 236 SHEET 7 AA5 9 LEU B 353 VAL B 361 -1 N TYR B 359 O LYS B 367 SHEET 8 AA5 9 ASP B 336 PRO B 345 -1 N GLU B 340 O ARG B 358 SHEET 9 AA5 9 VAL B 271 SER B 278 -1 N CYS B 277 O VAL B 337 SHEET 1 AA6 4 GLN B 251 GLU B 257 0 SHEET 2 AA6 4 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA6 4 ALA B 283 PHE B 296 -1 O GLY B 287 N ILE B 196 SHEET 4 AA6 4 LEU B 305 SER B 308 -1 O LEU B 305 N PHE B 296 CISPEP 1 LEU A 185 PRO A 186 0 -4.84 CISPEP 2 LEU B 185 PRO B 186 0 -6.88 SITE 1 AC1 14 TYR A 51 ARG A 66 GLY A 90 LEU A 96 SITE 2 AC1 14 GLU A 112 ALA A 113 SER A 114 PRO A 139 SITE 3 AC1 14 VAL A 140 GLU A 141 GLU A 155 MET A 166 SITE 4 AC1 14 SER A 169 5L6 A1002 SITE 1 AC2 12 CYS A 50 TYR A 51 VAL A 56 GLU A 59 SITE 2 AC2 12 GLU A 155 MET A 157 TYR A 159 HIS A 163 SITE 3 AC2 12 GLU A 164 HIS A 317 TRP A 318 SAH A1001 SITE 1 AC3 3 SER A 188 ALA A 189 THR A 295 SITE 1 AC4 15 TYR B 48 TYR B 51 MET B 60 ARG B 66 SITE 2 AC4 15 GLY B 90 ALA B 91 GLY B 92 LEU B 96 SITE 3 AC4 15 GLU B 112 ALA B 113 PRO B 139 VAL B 140 SITE 4 AC4 15 GLU B 141 MET B 166 SER B 169 SITE 1 AC5 12 CYS B 50 TYR B 51 VAL B 56 GLU B 59 SITE 2 AC5 12 GLU B 155 MET B 157 TYR B 159 HIS B 163 SITE 3 AC5 12 GLU B 164 HIS B 317 TRP B 318 HOH B1111 SITE 1 AC6 4 SER B 188 ALA B 189 GLN B 293 THR B 295 SITE 1 AC7 3 SER B 52 SER B 114 ALA B 115 SITE 1 AC8 2 VAL B 133 VAL B 135 SITE 1 AC9 2 ASN B 326 TYR B 359 CRYST1 100.244 100.244 89.868 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011127 0.00000