PDB Short entry for 5EDN HEADER TRANSCRIPTION 21-OCT-15 5EDN TITLE STRUCTURE OF HOXB13-DNA(TCG) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-B13; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP RESIDUES 209-284; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*GP*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*GP*TP*CP*C)-3'); COMPND 9 CHAIN: C, D, H, K; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*GP*GP*AP*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*AP*C)-3'); COMPND 14 CHAIN: E, F, I, L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOXB13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG20A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, DNA, COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,Y.YIN,A.JOLMA,A.POPOV,J.TAIPALE REVDAT 3 10-JAN-24 5EDN 1 REMARK REVDAT 2 15-AUG-18 5EDN 1 JRNL REVDAT 1 09-NOV-16 5EDN 0 JRNL AUTH E.MORGUNOVA,Y.YIN,P.K.DAS,A.JOLMA,F.ZHU,A.POPOV,Y.XU, JRNL AUTH 2 L.NILSSON,J.TAIPALE JRNL TITL TWO DISTINCT DNA SEQUENCES RECOGNIZED BY TRANSCRIPTION JRNL TITL 2 FACTORS REPRESENT ENTHALPY AND ENTROPY OPTIMA. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29638214 JRNL DOI 10.7554/ELIFE.32963 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 16610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2056 REMARK 3 NUCLEIC ACID ATOMS : 3116 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -93.34000 REMARK 3 B22 (A**2) : 74.62000 REMARK 3 B33 (A**2) : 18.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.355 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5572 ; 0.009 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3928 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8116 ; 1.569 ; 1.450 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9143 ; 1.506 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 7.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;38.874 ;20.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;25.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.886 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4041 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1262 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 965 ;10.526 ;11.683 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 963 ;10.534 ;11.684 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1198 ;16.305 ;17.521 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1199 ;16.298 ;17.524 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4607 ;10.117 ;12.636 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4607 ;10.117 ;12.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6919 ;14.812 ;18.847 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10193 ;22.762 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10194 ;22.761 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.613 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5EDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97239 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17652 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM CHLORIDE, REMARK 280 MAGNESIUM CHLORIDE, PEG 400, TRIS, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 194.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 194.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 CYS A 211 REMARK 465 ALA A 212 REMARK 465 PHE A 213 REMARK 465 ARG A 214 REMARK 465 ARG A 215 REMARK 465 GLY A 216 REMARK 465 LYS A 277 REMARK 465 VAL A 278 REMARK 465 LYS A 279 REMARK 465 ASN A 280 REMARK 465 SER A 281 REMARK 465 ALA A 282 REMARK 465 THR A 283 REMARK 465 PRO A 284 REMARK 465 ASP B 209 REMARK 465 ALA B 210 REMARK 465 CYS B 211 REMARK 465 ALA B 212 REMARK 465 PHE B 213 REMARK 465 ARG B 214 REMARK 465 ARG B 215 REMARK 465 GLY B 216 REMARK 465 VAL B 278 REMARK 465 LYS B 279 REMARK 465 ASN B 280 REMARK 465 SER B 281 REMARK 465 ALA B 282 REMARK 465 THR B 283 REMARK 465 PRO B 284 REMARK 465 ASP G 209 REMARK 465 ALA G 210 REMARK 465 CYS G 211 REMARK 465 ALA G 212 REMARK 465 PHE G 213 REMARK 465 ARG G 214 REMARK 465 ARG G 215 REMARK 465 GLY G 216 REMARK 465 ARG G 217 REMARK 465 VAL G 278 REMARK 465 LYS G 279 REMARK 465 ASN G 280 REMARK 465 SER G 281 REMARK 465 ALA G 282 REMARK 465 THR G 283 REMARK 465 PRO G 284 REMARK 465 ASP J 209 REMARK 465 ALA J 210 REMARK 465 CYS J 211 REMARK 465 ALA J 212 REMARK 465 PHE J 213 REMARK 465 ARG J 214 REMARK 465 ARG J 215 REMARK 465 GLY J 216 REMARK 465 VAL J 278 REMARK 465 LYS J 279 REMARK 465 ASN J 280 REMARK 465 SER J 281 REMARK 465 ALA J 282 REMARK 465 THR J 283 REMARK 465 PRO J 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS G 277 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N4 DC E 19 O4' DT H 2 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC F 19 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 ILE J 262 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 218 -83.42 -126.79 REMARK 500 LEU A 275 106.23 -59.61 REMARK 500 ARG B 220 76.38 -67.64 REMARK 500 LEU B 275 104.01 -59.29 REMARK 500 SER G 250 -64.47 169.21 REMARK 500 ALA G 252 63.70 -101.19 REMARK 500 THR G 253 -20.87 174.49 REMARK 500 LYS J 218 -72.53 -105.10 REMARK 500 LEU J 275 134.53 170.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS C 101 DBREF 5EDN A 209 284 UNP Q92826 HXB13_HUMAN 209 284 DBREF 5EDN B 209 284 UNP Q92826 HXB13_HUMAN 209 284 DBREF 5EDN C 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN D 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN E 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN F 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN G 209 284 UNP Q92826 HXB13_HUMAN 209 284 DBREF 5EDN H 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN I 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN J 209 284 UNP Q92826 HXB13_HUMAN 209 284 DBREF 5EDN K 1 19 PDB 5EDN 5EDN 1 19 DBREF 5EDN L 1 19 PDB 5EDN 5EDN 1 19 SEQRES 1 A 76 ASP ALA CYS ALA PHE ARG ARG GLY ARG LYS LYS ARG ILE SEQRES 2 A 76 PRO TYR SER LYS GLY GLN LEU ARG GLU LEU GLU ARG GLU SEQRES 3 A 76 TYR ALA ALA ASN LYS PHE ILE THR LYS ASP LYS ARG ARG SEQRES 4 A 76 LYS ILE SER ALA ALA THR SER LEU SER GLU ARG GLN ILE SEQRES 5 A 76 THR ILE TRP PHE GLN ASN ARG ARG VAL LYS GLU LYS LYS SEQRES 6 A 76 VAL LEU ALA LYS VAL LYS ASN SER ALA THR PRO SEQRES 1 B 76 ASP ALA CYS ALA PHE ARG ARG GLY ARG LYS LYS ARG ILE SEQRES 2 B 76 PRO TYR SER LYS GLY GLN LEU ARG GLU LEU GLU ARG GLU SEQRES 3 B 76 TYR ALA ALA ASN LYS PHE ILE THR LYS ASP LYS ARG ARG SEQRES 4 B 76 LYS ILE SER ALA ALA THR SER LEU SER GLU ARG GLN ILE SEQRES 5 B 76 THR ILE TRP PHE GLN ASN ARG ARG VAL LYS GLU LYS LYS SEQRES 6 B 76 VAL LEU ALA LYS VAL LYS ASN SER ALA THR PRO SEQRES 1 C 19 DG DT DT DG DT DG DT DT DT DT DA DC DG SEQRES 2 C 19 DA DG DG DT DC DC SEQRES 1 D 19 DG DT DT DG DT DG DT DT DT DT DA DC DG SEQRES 2 D 19 DA DG DG DT DC DC SEQRES 1 E 19 DG DG DA DC DC DT DC DG DT DA DA DA DA SEQRES 2 E 19 DC DA DC DA DA DC SEQRES 1 F 19 DG DG DA DC DC DT DC DG DT DA DA DA DA SEQRES 2 F 19 DC DA DC DA DA DC SEQRES 1 G 76 ASP ALA CYS ALA PHE ARG ARG GLY ARG LYS LYS ARG ILE SEQRES 2 G 76 PRO TYR SER LYS GLY GLN LEU ARG GLU LEU GLU ARG GLU SEQRES 3 G 76 TYR ALA ALA ASN LYS PHE ILE THR LYS ASP LYS ARG ARG SEQRES 4 G 76 LYS ILE SER ALA ALA THR SER LEU SER GLU ARG GLN ILE SEQRES 5 G 76 THR ILE TRP PHE GLN ASN ARG ARG VAL LYS GLU LYS LYS SEQRES 6 G 76 VAL LEU ALA LYS VAL LYS ASN SER ALA THR PRO SEQRES 1 H 19 DG DT DT DG DT DG DT DT DT DT DA DC DG SEQRES 2 H 19 DA DG DG DT DC DC SEQRES 1 I 19 DG DG DA DC DC DT DC DG DT DA DA DA DA SEQRES 2 I 19 DC DA DC DA DA DC SEQRES 1 J 76 ASP ALA CYS ALA PHE ARG ARG GLY ARG LYS LYS ARG ILE SEQRES 2 J 76 PRO TYR SER LYS GLY GLN LEU ARG GLU LEU GLU ARG GLU SEQRES 3 J 76 TYR ALA ALA ASN LYS PHE ILE THR LYS ASP LYS ARG ARG SEQRES 4 J 76 LYS ILE SER ALA ALA THR SER LEU SER GLU ARG GLN ILE SEQRES 5 J 76 THR ILE TRP PHE GLN ASN ARG ARG VAL LYS GLU LYS LYS SEQRES 6 J 76 VAL LEU ALA LYS VAL LYS ASN SER ALA THR PRO SEQRES 1 K 19 DG DT DT DG DT DG DT DT DT DT DA DC DG SEQRES 2 K 19 DA DG DG DT DC DC SEQRES 1 L 19 DG DG DA DC DC DT DC DG DT DA DA DA DA SEQRES 2 L 19 DC DA DC DA DA DC HET TRS C 101 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 13 TRS C4 H12 N O3 1+ FORMUL 14 HOH *17(H2 O) HELIX 1 AA1 SER A 224 ASN A 238 1 15 HELIX 2 AA2 THR A 242 SER A 254 1 13 HELIX 3 AA3 SER A 256 LEU A 275 1 20 HELIX 4 AA4 SER B 224 ASN B 238 1 15 HELIX 5 AA5 THR B 242 SER B 254 1 13 HELIX 6 AA6 SER B 256 VAL B 274 1 19 HELIX 7 AA7 SER G 224 ASN G 238 1 15 HELIX 8 AA8 THR G 242 ALA G 252 1 11 HELIX 9 AA9 SER G 256 LEU G 275 1 20 HELIX 10 AB1 GLY J 226 ASN J 238 1 13 HELIX 11 AB2 THR J 242 SER J 254 1 13 HELIX 12 AB3 SER J 256 VAL J 274 1 19 CISPEP 1 ARG A 217 LYS A 218 0 7.02 CISPEP 2 LYS A 218 LYS A 219 0 -19.29 CISPEP 3 ARG B 217 LYS B 218 0 -22.81 CISPEP 4 LYS B 218 LYS B 219 0 16.99 CISPEP 5 LYS G 218 LYS G 219 0 -24.85 CISPEP 6 ALA G 276 LYS G 277 0 28.98 CISPEP 7 ARG J 217 LYS J 218 0 3.92 CISPEP 8 LYS J 218 LYS J 219 0 -1.62 CISPEP 9 ALA J 276 LYS J 277 0 -3.92 SITE 1 AC1 5 DG C 13 DA C 14 DG C 15 DG C 16 SITE 2 AC1 5 DC F 4 CRYST1 52.618 52.522 389.331 90.00 90.00 90.00 P 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002569 0.00000