PDB Short entry for 5EF6 HEADER TRANSCRIPTION 23-OCT-15 5EF6 TITLE STRUCTURE OF HOXB13 COMPLEX WITH METHYLATED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-B13; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP RESIDUES 217-278; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM) COMPND 8 P*GP*AP*GP*GP*TP*CP*C)-3'); COMPND 9 CHAIN: C, D, H, K; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM) COMPND 13 P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'); COMPND 14 CHAIN: F, E, I, L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOXB13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETG20A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, METHYLATED DNA, COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,Y.YIN,A.JOLMA,A.POPOV,J.TAIPALE REVDAT 2 17-MAY-17 5EF6 1 JRNL REVDAT 1 08-FEB-17 5EF6 0 JRNL AUTH Y.YIN,E.MORGUNOVA,A.JOLMA,E.KAASINEN,B.SAHU,S.KHUND-SAYEED, JRNL AUTH 2 P.K.DAS,T.KIVIOJA,K.DAVE,F.ZHONG,K.R.NITTA,M.TAIPALE, JRNL AUTH 3 A.POPOV,P.A.GINNO,S.DOMCKE,J.YAN,D.SCHUBELER,C.VINSON, JRNL AUTH 4 J.TAIPALE JRNL TITL IMPACT OF CYTOSINE METHYLATION ON DNA BINDING SPECIFICITIES JRNL TITL 2 OF HUMAN TRANSCRIPTION FACTORS. JRNL REF SCIENCE V. 356 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28473536 JRNL DOI 10.1126/SCIENCE.AAJ2239 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 31790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1724 - 6.8561 0.94 2464 145 0.2567 0.2809 REMARK 3 2 6.8561 - 5.4470 0.96 2543 147 0.2847 0.3235 REMARK 3 3 5.4470 - 4.7599 0.98 2583 159 0.2645 0.2863 REMARK 3 4 4.7599 - 4.3254 0.95 2510 128 0.2584 0.3108 REMARK 3 5 4.3254 - 4.0157 0.96 2579 112 0.2658 0.2703 REMARK 3 6 4.0157 - 3.7792 0.96 2561 119 0.2729 0.2971 REMARK 3 7 3.7792 - 3.5900 0.95 2501 150 0.3085 0.3219 REMARK 3 8 3.5900 - 3.4339 0.96 2543 131 0.2998 0.3175 REMARK 3 9 3.4339 - 3.3018 0.92 2391 136 0.3048 0.2908 REMARK 3 10 3.3018 - 3.1879 0.92 2467 137 0.3190 0.3818 REMARK 3 11 3.1879 - 3.0882 0.95 2466 127 0.3607 0.5210 REMARK 3 12 3.0882 - 3.0000 0.95 2534 157 0.4110 0.3998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5434 REMARK 3 ANGLE : 0.994 7904 REMARK 3 CHIRALITY : 0.042 868 REMARK 3 PLANARITY : 0.003 490 REMARK 3 DIHEDRAL : 29.870 2256 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 55.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.86400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM CHLORIDE, REMARK 280 MAGNESIUM CHLORIDE, 2-METHYL-1-PROPANOL, TRIS, PH 8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 278 REMARK 465 VAL B 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N7 DA L 17 O HOH L 101 2.17 REMARK 500 ND2 ASN B 266 O HOH B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DC H 18 O3' DC H 18 2655 2.08 REMARK 500 O3' DC K 18 O3' DC K 18 2755 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 11 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA F 17 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA E 17 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA I 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA I 17 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA L 11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA L 17 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 218 49.42 -140.55 REMARK 500 ARG A 220 117.63 -13.04 REMARK 500 LEU A 275 91.18 -64.73 REMARK 500 LYS B 218 48.89 -146.73 REMARK 500 ARG B 220 120.36 -8.43 REMARK 500 LEU B 275 86.27 -65.57 REMARK 500 LYS G 218 51.68 -152.23 REMARK 500 ARG G 220 120.16 -15.36 REMARK 500 LEU G 275 103.12 -56.09 REMARK 500 LYS G 277 -114.61 12.11 REMARK 500 LYS J 218 47.63 -147.47 REMARK 500 ARG J 220 119.86 -8.79 REMARK 500 LEU J 275 80.66 -61.99 REMARK 500 LYS J 277 102.93 140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G 307 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH J 308 DISTANCE = 7.10 ANGSTROMS DBREF 5EF6 A 217 278 UNP Q92826 HXB13_HUMAN 217 278 DBREF 5EF6 C 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 F 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 B 217 278 UNP Q92826 HXB13_HUMAN 217 278 DBREF 5EF6 D 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 E 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 G 217 278 UNP Q92826 HXB13_HUMAN 217 278 DBREF 5EF6 H 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 I 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 J 217 278 UNP Q92826 HXB13_HUMAN 217 278 DBREF 5EF6 K 1 18 PDB 5EF6 5EF6 1 18 DBREF 5EF6 L 1 18 PDB 5EF6 5EF6 1 18 SEQRES 1 A 62 ARG LYS LYS ARG ILE PRO TYR SER LYS GLY GLN LEU ARG SEQRES 2 A 62 GLU LEU GLU ARG GLU TYR ALA ALA ASN LYS PHE ILE THR SEQRES 3 A 62 LYS ASP LYS ARG ARG LYS ILE SER ALA ALA THR SER LEU SEQRES 4 A 62 SER GLU ARG GLN ILE THR ILE TRP PHE GLN ASN ARG ARG SEQRES 5 A 62 VAL LYS GLU LYS LYS VAL LEU ALA LYS VAL SEQRES 1 C 18 DT DT DG DT DG DT DT DT DT DA 5CM DG DA SEQRES 2 C 18 DG DG DT DC DC SEQRES 1 F 18 DG DG DA DC DC DT 5CM DG DT DA DA DA DA SEQRES 2 F 18 DC DA DC DA DA SEQRES 1 B 62 ARG LYS LYS ARG ILE PRO TYR SER LYS GLY GLN LEU ARG SEQRES 2 B 62 GLU LEU GLU ARG GLU TYR ALA ALA ASN LYS PHE ILE THR SEQRES 3 B 62 LYS ASP LYS ARG ARG LYS ILE SER ALA ALA THR SER LEU SEQRES 4 B 62 SER GLU ARG GLN ILE THR ILE TRP PHE GLN ASN ARG ARG SEQRES 5 B 62 VAL LYS GLU LYS LYS VAL LEU ALA LYS VAL SEQRES 1 D 18 DT DT DG DT DG DT DT DT DT DA 5CM DG DA SEQRES 2 D 18 DG DG DT DC DC SEQRES 1 E 18 DG DG DA DC DC DT 5CM DG DT DA DA DA DA SEQRES 2 E 18 DC DA DC DA DA SEQRES 1 G 62 ARG LYS LYS ARG ILE PRO TYR SER LYS GLY GLN LEU ARG SEQRES 2 G 62 GLU LEU GLU ARG GLU TYR ALA ALA ASN LYS PHE ILE THR SEQRES 3 G 62 LYS ASP LYS ARG ARG LYS ILE SER ALA ALA THR SER LEU SEQRES 4 G 62 SER GLU ARG GLN ILE THR ILE TRP PHE GLN ASN ARG ARG SEQRES 5 G 62 VAL LYS GLU LYS LYS VAL LEU ALA LYS VAL SEQRES 1 H 18 DT DT DG DT DG DT DT DT DT DA 5CM DG DA SEQRES 2 H 18 DG DG DT DC DC SEQRES 1 I 18 DG DG DA DC DC DT 5CM DG DT DA DA DA DA SEQRES 2 I 18 DC DA DC DA DA SEQRES 1 J 62 ARG LYS LYS ARG ILE PRO TYR SER LYS GLY GLN LEU ARG SEQRES 2 J 62 GLU LEU GLU ARG GLU TYR ALA ALA ASN LYS PHE ILE THR SEQRES 3 J 62 LYS ASP LYS ARG ARG LYS ILE SER ALA ALA THR SER LEU SEQRES 4 J 62 SER GLU ARG GLN ILE THR ILE TRP PHE GLN ASN ARG ARG SEQRES 5 J 62 VAL LYS GLU LYS LYS VAL LEU ALA LYS VAL SEQRES 1 K 18 DT DT DG DT DG DT DT DT DT DA 5CM DG DA SEQRES 2 K 18 DG DG DT DC DC SEQRES 1 L 18 DG DG DA DC DC DT 5CM DG DT DA DA DA DA SEQRES 2 L 18 DC DA DC DA DA HET 5CM C 11 20 HET 5CM F 7 20 HET 5CM D 11 20 HET 5CM E 7 20 HET 5CM H 11 20 HET 5CM I 7 20 HET 5CM K 11 20 HET 5CM L 7 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 2 5CM 8(C10 H16 N3 O7 P) FORMUL 13 HOH *101(H2 O) HELIX 1 AA1 SER A 224 ASN A 238 1 15 HELIX 2 AA2 THR A 242 SER A 254 1 13 HELIX 3 AA3 SER A 256 VAL A 274 1 19 HELIX 4 AA4 SER B 224 ASN B 238 1 15 HELIX 5 AA5 THR B 242 SER B 254 1 13 HELIX 6 AA6 SER B 256 VAL B 274 1 19 HELIX 7 AA7 SER G 224 ASN G 238 1 15 HELIX 8 AA8 THR G 242 SER G 254 1 13 HELIX 9 AA9 SER G 256 LYS G 273 1 18 HELIX 10 AB1 SER J 224 ASN J 238 1 15 HELIX 11 AB2 THR J 242 SER J 254 1 13 HELIX 12 AB3 SER J 256 VAL J 274 1 19 LINK O3' DA C 10 P 5CM C 11 1555 1555 1.61 LINK O3' 5CM C 11 P DG C 12 1555 1555 1.60 LINK O3' DT F 6 P 5CM F 7 1555 1555 1.59 LINK O3' 5CM F 7 P DG F 8 1555 1555 1.62 LINK O3' DA D 10 P 5CM D 11 1555 1555 1.61 LINK O3' 5CM D 11 P DG D 12 1555 1555 1.61 LINK O3' DT E 6 P 5CM E 7 1555 1555 1.61 LINK O3' 5CM E 7 P DG E 8 1555 1555 1.62 LINK O3' DA H 10 P 5CM H 11 1555 1555 1.61 LINK O3' 5CM H 11 P DG H 12 1555 1555 1.60 LINK O3' DT I 6 P 5CM I 7 1555 1555 1.61 LINK O3' 5CM I 7 P DG I 8 1555 1555 1.62 LINK O3' DA K 10 P 5CM K 11 1555 1555 1.61 LINK O3' 5CM K 11 P DG K 12 1555 1555 1.60 LINK O3' DT L 6 P 5CM L 7 1555 1555 1.61 LINK O3' 5CM L 7 P DG L 8 1555 1555 1.62 CISPEP 1 ARG A 217 LYS A 218 0 -10.95 CISPEP 2 LYS A 218 LYS A 219 0 -19.25 CISPEP 3 ALA A 276 LYS A 277 0 -8.45 CISPEP 4 ARG B 217 LYS B 218 0 -6.08 CISPEP 5 LYS B 218 LYS B 219 0 -18.62 CISPEP 6 ALA B 276 LYS B 277 0 5.65 CISPEP 7 ARG G 217 LYS G 218 0 -11.62 CISPEP 8 LYS G 218 LYS G 219 0 -18.97 CISPEP 9 ALA G 276 LYS G 277 0 -13.67 CISPEP 10 LYS G 277 VAL G 278 0 17.54 CISPEP 11 ARG J 217 LYS J 218 0 -6.42 CISPEP 12 LYS J 218 LYS J 219 0 -18.65 CISPEP 13 ALA J 276 LYS J 277 0 -0.03 CISPEP 14 LYS J 277 VAL J 278 0 4.88 CRYST1 77.969 55.557 102.010 90.00 102.24 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012826 0.000000 0.002783 0.00000 SCALE2 0.000000 0.018000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010031 0.00000