PDB Short entry for 5EG6 HEADER TRANSCRIPTION/DNA BINDING PROTEIN/DNA 26-OCT-15 5EG6 TITLE CSL-RITA COMPLEX BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)- COMPND 3 3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: RESIDUES 53-474; COMPND 10 SYNONYM: J KAPPA-RECOMBINATION SIGNAL-BINDING PROTEIN,RBP-J KAPPA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HRITA; COMPND 14 CHAIN: R; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)- COMPND 18 3'); COMPND 19 CHAIN: A; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: RBPJ, IGKJRB1, IGKRSBP, RBPSUH; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS NOTCH, RBPJ, TRANSCRIPTION-DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.H.TABAJA,R.A.KOVALL REVDAT 4 06-MAR-24 5EG6 1 REMARK REVDAT 3 04-DEC-19 5EG6 1 REMARK REVDAT 2 20-SEP-17 5EG6 1 REMARK REVDAT 1 26-APR-17 5EG6 0 JRNL AUTH N.H.TABAJA,R.A.KOVALL JRNL TITL CSL-RITA COMPLEX BOUND TO DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 38480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8346 - 5.0444 0.99 3082 164 0.1747 0.1852 REMARK 3 2 5.0444 - 4.0050 1.00 2946 164 0.1531 0.1863 REMARK 3 3 4.0050 - 3.4990 0.99 2927 159 0.1882 0.2300 REMARK 3 4 3.4990 - 3.1792 0.99 2888 158 0.2059 0.2465 REMARK 3 5 3.1792 - 2.9514 0.99 2872 159 0.2128 0.2549 REMARK 3 6 2.9514 - 2.7775 0.98 2843 159 0.2337 0.2944 REMARK 3 7 2.7775 - 2.6384 0.98 2819 154 0.2342 0.2832 REMARK 3 8 2.6384 - 2.5236 0.97 2786 153 0.2313 0.2612 REMARK 3 9 2.5236 - 2.4264 0.95 2730 149 0.2254 0.2978 REMARK 3 10 2.4264 - 2.3427 0.93 2699 140 0.2262 0.2964 REMARK 3 11 2.3427 - 2.2695 0.86 2451 132 0.2155 0.2637 REMARK 3 12 2.2695 - 2.2046 0.77 2195 119 0.2167 0.2802 REMARK 3 13 2.2046 - 2.1466 0.65 1872 98 0.2074 0.2581 REMARK 3 14 2.1466 - 2.0942 0.48 1389 73 0.1985 0.2831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4249 REMARK 3 ANGLE : 1.229 5822 REMARK 3 CHIRALITY : 0.078 637 REMARK 3 PLANARITY : 0.005 635 REMARK 3 DIHEDRAL : 19.242 1627 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.094 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH5.5, 0.2M AMMONIUM REMARK 280 ACETATE, 10% 1,4-BUTANEDIOL, AND 16% POLYETHYLENE GLYCOL 3350, REMARK 280 MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.39400 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.35550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.39400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.35550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 135 REMARK 465 GLN C 136 REMARK 465 LYS C 195 REMARK 465 LYS C 196 REMARK 465 ARG C 220 REMARK 465 SER C 221 REMARK 465 GLN C 222 REMARK 465 GLY C 390 REMARK 465 PRO C 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 LYS C 201 CG CD CE NZ REMARK 470 LEU C 219 CG CD1 CD2 REMARK 470 LYS C 295 CG CD CE NZ REMARK 470 LYS C 341 CG CD CE NZ REMARK 470 VAL C 394 CG1 CG2 REMARK 470 PRO R 951 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN C 140 O HOH C 601 2.13 REMARK 500 OD2 ASP C 160 O HOH C 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DT A 1 O3' DA A 15 4565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 3 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC B 10 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT A 1 C4' - C3' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 DT A 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 133 22.84 25.89 REMARK 500 ILE C 179 -60.37 -102.20 REMARK 500 ASN C 202 79.28 -107.34 REMARK 500 LYS C 295 -99.43 50.05 REMARK 500 ASP C 303 14.81 -148.91 REMARK 500 GLN C 328 -122.60 51.26 REMARK 500 PRO C 340 -80.11 -43.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 523 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU1 C 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO R 1001 DBREF 5EG6 B 1 15 PDB 5EG6 5EG6 1 15 DBREF 5EG6 C 53 474 UNP P31266 SUH_MOUSE 53 474 DBREF 5EG6 R 936 951 PDB 5EG6 5EG6 936 951 DBREF 5EG6 A 1 15 PDB 5EG6 5EG6 1 15 SEQRES 1 B 15 DA DA DT DC DT DT DT DC DC DC DA DC DA SEQRES 2 B 15 DG DT SEQRES 1 C 422 PRO PRO LYS ARG LEU THR ARG GLU ALA MET ARG ASN TYR SEQRES 2 C 422 LEU LYS GLU ARG GLY ASP GLN THR VAL LEU ILE LEU HIS SEQRES 3 C 422 ALA LYS VAL ALA GLN LYS SER TYR GLY ASN GLU LYS ARG SEQRES 4 C 422 PHE PHE CYS PRO PRO PRO CYS VAL TYR LEU MET GLY SER SEQRES 5 C 422 GLY TRP LYS LYS LYS LYS GLU GLN MET GLU ARG ASP GLY SEQRES 6 C 422 CYS SER GLU GLN GLU SER GLN PRO CYS ALA PHE ILE GLY SEQRES 7 C 422 ILE GLY ASN SER ASP GLN GLU MET GLN GLN LEU ASN LEU SEQRES 8 C 422 GLU GLY LYS ASN TYR CYS THR ALA LYS THR LEU TYR ILE SEQRES 9 C 422 SER ASP SER ASP LYS ARG LYS HIS PHE MET LEU SER VAL SEQRES 10 C 422 LYS MET PHE TYR GLY ASN SER ASP ASP ILE GLY VAL PHE SEQRES 11 C 422 LEU SER LYS ARG ILE LYS VAL ILE SER LYS PRO SER LYS SEQRES 12 C 422 LYS LYS GLN SER LEU LYS ASN ALA ASP LEU CYS ILE ALA SEQRES 13 C 422 SER GLY THR LYS VAL ALA LEU PHE ASN ARG LEU ARG SER SEQRES 14 C 422 GLN THR VAL SER THR ARG TYR LEU HIS VAL GLU GLY GLY SEQRES 15 C 422 ASN PHE HIS ALA SER SER GLN GLN TRP GLY ALA PHE TYR SEQRES 16 C 422 ILE HIS LEU LEU ASP ASP ASP GLU SER GLU GLY GLU GLU SEQRES 17 C 422 PHE THR VAL ARG ASP GLY TYR ILE HIS TYR GLY GLN THR SEQRES 18 C 422 VAL LYS LEU VAL CYS SER VAL THR GLY MET ALA LEU PRO SEQRES 19 C 422 ARG LEU ILE ILE ARG LYS VAL ASP LYS GLN THR ALA LEU SEQRES 20 C 422 LEU ASP ALA ASP ASP PRO VAL SER GLN LEU HIS LYS CYS SEQRES 21 C 422 ALA PHE TYR LEU LYS ASP THR GLU ARG MET TYR LEU CYS SEQRES 22 C 422 LEU SER GLN GLU ARG ILE ILE GLN PHE GLN ALA THR PRO SEQRES 23 C 422 CYS PRO LYS GLU GLN ASN LYS GLU MET ILE ASN ASP GLY SEQRES 24 C 422 ALA SER TRP THR ILE ILE SER THR ASP LYS ALA GLU TYR SEQRES 25 C 422 THR PHE TYR GLU GLY MET GLY PRO VAL LEU ALA PRO VAL SEQRES 26 C 422 THR PRO VAL PRO VAL VAL GLU SER LEU GLN LEU ASN GLY SEQRES 27 C 422 GLY GLY ASP VAL ALA MET LEU GLU LEU THR GLY GLN ASN SEQRES 28 C 422 PHE THR PRO ASN LEU ARG VAL TRP PHE GLY ASP VAL GLU SEQRES 29 C 422 ALA GLU THR MET TYR ARG CYS GLY GLU SER MET LEU CYS SEQRES 30 C 422 VAL VAL PRO ASP ILE SER ALA PHE ARG GLU GLY TRP ARG SEQRES 31 C 422 TRP VAL ARG GLN PRO VAL GLN VAL PRO VAL THR LEU VAL SEQRES 32 C 422 ARG ASN ASP GLY VAL ILE TYR SER THR SER LEU THR PHE SEQRES 33 C 422 THR TYR THR PRO GLU PRO SEQRES 1 R 16 ASP ALA ALA LYS LEU ARG ALA LEU LEU TRP THR PRO PRO SEQRES 2 R 16 PRO THR PRO SEQRES 1 A 15 DT DT DA DC DT DG DT DG DG DG DA DA DA SEQRES 2 A 15 DG DA HET EDO C 501 4 HET EDO C 502 4 HET EDO C 503 4 HET EDO C 504 4 HET EDO C 505 4 HET EDO C 506 4 HET EDO C 507 4 HET EDO C 508 4 HET EDO C 509 4 HET EDO C 510 4 HET EDO C 511 4 HET EDO C 512 4 HET EDO C 513 4 HET EDO C 514 4 HET EDO C 515 4 HET EDO C 516 4 HET EDO C 517 4 HET EDO C 518 4 HET BU1 C 519 6 HET BU1 C 520 6 HET BU1 C 521 6 HET BU1 C 522 6 HET BU1 C 523 6 HET BU1 C 524 6 HET BU1 C 525 6 HET EDO R1001 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM BU1 1,4-BUTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 19(C2 H6 O2) FORMUL 23 BU1 7(C4 H10 O2) FORMUL 31 HOH *161(H2 O) HELIX 1 AA1 THR C 58 ARG C 69 1 12 HELIX 2 AA2 SER C 104 ASP C 116 1 13 HELIX 3 AA3 SER C 119 GLN C 124 1 6 HELIX 4 AA4 ASN C 349 SER C 353 5 5 HELIX 5 AA5 ASP C 433 PHE C 437 5 5 SHEET 1 AA1 8 TYR C 148 THR C 150 0 SHEET 2 AA1 8 CYS C 98 MET C 102 -1 N VAL C 99 O CYS C 149 SHEET 3 AA1 8 GLN C 72 ALA C 79 -1 N LEU C 75 O TYR C 100 SHEET 4 AA1 8 TRP C 354 GLU C 368 -1 O PHE C 366 N GLN C 72 SHEET 5 AA1 8 VAL C 460 TYR C 470 -1 O ILE C 461 N TYR C 367 SHEET 6 AA1 8 VAL C 448 ARG C 456 -1 N VAL C 448 O TYR C 470 SHEET 7 AA1 8 LEU C 408 PHE C 412 -1 N TRP C 411 O THR C 453 SHEET 8 AA1 8 VAL C 415 GLU C 416 -1 O VAL C 415 N PHE C 412 SHEET 1 AA2 4 TRP C 354 GLU C 368 0 SHEET 2 AA2 4 THR C 211 ASN C 217 -1 N PHE C 216 O THR C 355 SHEET 3 AA2 4 ARG C 227 GLU C 232 -1 O ARG C 227 N ASN C 217 SHEET 4 AA2 4 ASN C 235 SER C 239 -1 O HIS C 237 N HIS C 230 SHEET 1 AA3 9 THR C 211 ASN C 217 0 SHEET 2 AA3 9 PHE C 246 LEU C 251 -1 O PHE C 246 N VAL C 213 SHEET 3 AA3 9 THR C 273 CYS C 278 -1 O THR C 273 N LEU C 251 SHEET 4 AA3 9 LEU C 288 ASP C 294 -1 O LEU C 288 N VAL C 274 SHEET 5 AA3 9 LYS C 311 LEU C 316 -1 O ALA C 313 N ARG C 291 SHEET 6 AA3 9 LEU C 288 ASP C 294 -1 N ARG C 291 O ALA C 313 SHEET 7 AA3 9 THR C 297 LEU C 299 -1 O LEU C 299 N LYS C 292 SHEET 8 AA3 9 LYS C 345 MET C 347 -1 O GLU C 346 N ALA C 298 SHEET 9 AA3 9 THR C 337 PRO C 338 -1 N THR C 337 O MET C 347 SHEET 1 AA4 3 VAL C 81 GLN C 83 0 SHEET 2 AA4 3 ILE C 187 ILE C 190 1 O ILE C 190 N ALA C 82 SHEET 3 AA4 3 HIS C 164 PHE C 165 -1 N PHE C 165 O ILE C 187 SHEET 1 AA5 4 GLN C 139 LEU C 141 0 SHEET 2 AA5 4 PRO C 125 GLY C 130 -1 N ILE C 129 O GLN C 139 SHEET 3 AA5 4 SER C 168 TYR C 173 -1 O PHE C 172 N CYS C 126 SHEET 4 AA5 4 ASP C 178 LEU C 183 -1 O GLY C 180 N MET C 171 SHEET 1 AA6 2 GLU C 260 VAL C 263 0 SHEET 2 AA6 2 ALA R 938 ARG R 941 -1 O LEU R 940 N PHE C 261 SHEET 1 AA7 2 MET C 322 SER C 327 0 SHEET 2 AA7 2 ARG C 330 GLN C 335 -1 O ILE C 332 N CYS C 325 SHEET 1 AA8 4 VAL C 382 LEU C 388 0 SHEET 2 AA8 4 MET C 396 GLN C 402 -1 O GLU C 398 N GLN C 387 SHEET 3 AA8 4 SER C 426 VAL C 430 -1 O MET C 427 N LEU C 399 SHEET 4 AA8 4 THR C 419 CYS C 423 -1 N MET C 420 O LEU C 428 CISPEP 1 CYS C 94 PRO C 95 0 2.34 CISPEP 2 THR C 378 PRO C 379 0 -5.52 SITE 1 AC1 3 THR C 469 TYR C 470 THR C 471 SITE 1 AC2 4 LYS C 212 THR C 359 ASP C 360 LYS C 361 SITE 1 AC3 4 ASP C 252 ASP C 254 GLU C 255 ARG C 264 SITE 1 AC4 8 ARG C 69 PRO C 451 VAL C 452 THR C 464 SITE 2 AC4 8 SER C 465 LEU C 466 THR C 467 HOH C 668 SITE 1 AC5 6 ARG C 69 ASP C 71 GLY C 103 SER C 104 SITE 2 AC5 6 HOH C 643 HOH C 731 SITE 1 AC6 6 LYS C 108 GLU C 111 GLN C 112 ARG C 115 SITE 2 AC6 6 HOH C 619 HOH C 716 SITE 1 AC7 3 LYS C 185 ARG C 186 HOH C 706 SITE 1 AC8 1 VAL C 224 SITE 1 AC9 5 LEU C 57 THR C 58 GLU C 416 EDO C 517 SITE 2 AC9 5 HOH C 613 SITE 1 AD1 6 VAL C 181 LEU C 183 TYR C 364 VAL C 380 SITE 2 AD1 6 HOH C 642 HOH C 741 SITE 1 AD2 3 ARG C 227 SER C 240 GLU C 329 SITE 1 AD3 6 LEU C 250 ASP C 265 GLY C 266 TYR C 267 SITE 2 AD3 6 HIS C 269 GLN C 272 SITE 1 AD4 10 ARG C 56 ASN C 407 ARG C 409 TRP C 411 SITE 2 AD4 10 GLU C 416 VAL C 455 ARG C 456 ASN C 457 SITE 3 AD4 10 HOH C 652 HOH C 671 SITE 1 AD5 6 PHE C 236 HIS C 237 ARG C 330 ILE C 331 SITE 2 AD5 6 HOH C 707 TRP R 945 SITE 1 AD6 5 ASN C 142 LYS C 146 CYS C 149 THR C 150 SITE 2 AD6 5 HOH C 719 SITE 1 AD7 5 GLY C 103 SER C 104 TRP C 106 LYS C 107 SITE 2 AD7 5 BU1 C 520 SITE 1 AD8 4 THR C 58 ARG C 59 GLU C 60 EDO C 509 SITE 1 AD9 4 GLY C 87 ASN C 88 GLU C 89 TYR C 155 SITE 1 AE1 7 GLN C 72 GLY C 105 LYS C 108 LYS C 109 SITE 2 AE1 7 TYR C 367 GLU C 368 HOH C 627 SITE 1 AE2 7 LEU C 101 TRP C 106 GLN C 124 LEU C 143 SITE 2 AE2 7 LYS C 146 ASN C 147 EDO C 516 SITE 1 AE3 4 ILE C 131 TYR C 155 SER C 157 HOH C 602 SITE 1 AE4 4 GLU C 363 THR C 365 TYR C 462 SER C 463 SITE 1 AE5 7 LYS C 80 ASP C 204 THR C 211 GLN C 308 SITE 2 AE5 7 SER C 358 HOH C 633 HOH C 691 SITE 1 AE6 3 ARG C 56 THR C 58 MET C 370 SITE 1 AE7 3 LEU C 77 MET C 102 VAL C 280 SITE 1 AE8 2 LEU R 944 THR R 946 CRYST1 76.788 96.410 96.711 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010340 0.00000