PDB Short entry for 5EI2 HEADER TRANSFERASE 29-OCT-15 5EI2 TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION TITLE 3 APPROACH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-(2,4-DIMETHOXYPHENYL)-8-(1-METHYL-1H-PYRAZOL-4-YL) COMPND 8 PYRIDO[3,4-D]PYRIMIDIN-2-AMINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4- KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN, AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI, AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER REVDAT 4 04-APR-18 5EI2 1 SOURCE REVDAT 3 30-AUG-17 5EI2 1 REMARK REVDAT 2 11-MAY-16 5EI2 1 JRNL REVDAT 1 20-APR-16 5EI2 0 JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,S.NAUD,I.M.WESTWOOD, JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL, JRNL AUTH 3 G.W.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE, JRNL AUTH 4 H.SAVILLE,J.SCHMITT,B.MATIJSSEN,R.BURKE,R.L.VAN MONTFORT, JRNL AUTH 5 F.I.RAYNAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED JRNL TITL 3 HYBRIDIZATION APPROACH. JRNL REF J.MED.CHEM. V. 59 3671 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27055065 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01811 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 10815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 576 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3150 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2312 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2988 REMARK 3 BIN R VALUE (WORKING SET) : 0.2299 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.30250 REMARK 3 B22 (A**2) : -13.52380 REMARK 3 B33 (A**2) : 0.22130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.501 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.529 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.338 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.538 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.344 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2032 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2771 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 658 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 44 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 323 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2032 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 280 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2313 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.76 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|516 - 561} REMARK 3 ORIGIN FOR THE GROUP (A): 10.2265 -30.5059 -7.6096 REMARK 3 T TENSOR REMARK 3 T11: -0.0196 T22: 0.0763 REMARK 3 T33: -0.2228 T12: -0.0787 REMARK 3 T13: -0.0144 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 8.0972 L22: 2.4738 REMARK 3 L33: 3.8880 L12: 2.9089 REMARK 3 L13: -2.4801 L23: -2.3741 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.4770 S13: -0.0899 REMARK 3 S21: 0.2644 S22: -0.0320 S23: -0.5442 REMARK 3 S31: 0.0035 S32: 0.0425 S33: 0.0679 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|562 - 620} REMARK 3 ORIGIN FOR THE GROUP (A): 3.2965 -29.7438 -17.5761 REMARK 3 T TENSOR REMARK 3 T11: -0.1945 T22: 0.0257 REMARK 3 T33: -0.1551 T12: -0.0550 REMARK 3 T13: 0.1082 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 7.1425 L22: 3.5201 REMARK 3 L33: 4.2535 L12: 2.3103 REMARK 3 L13: 2.1785 L23: -0.7099 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.3893 S13: 0.1856 REMARK 3 S21: 0.3762 S22: 0.1283 S23: -0.1912 REMARK 3 S31: -0.0521 S32: 0.0300 S33: -0.0487 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|621 - 640} REMARK 3 ORIGIN FOR THE GROUP (A): -13.7012 -31.1034 -21.9693 REMARK 3 T TENSOR REMARK 3 T11: -0.2289 T22: 0.2333 REMARK 3 T33: -0.0557 T12: 0.0422 REMARK 3 T13: -0.0364 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 6.8330 L22: 3.5932 REMARK 3 L33: 0.9642 L12: 0.0144 REMARK 3 L13: 2.9104 L23: -2.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.0767 S13: 0.1462 REMARK 3 S21: -0.2175 S22: -0.1623 S23: 0.0785 REMARK 3 S31: -0.3134 S32: -0.1378 S33: 0.1847 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|641 - 794} REMARK 3 ORIGIN FOR THE GROUP (A): -11.1026 -41.5223 -27.7831 REMARK 3 T TENSOR REMARK 3 T11: -0.3032 T22: 0.1682 REMARK 3 T33: -0.1526 T12: 0.0240 REMARK 3 T13: -0.0165 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 4.8806 L22: 4.4767 REMARK 3 L33: 3.6978 L12: 0.2357 REMARK 3 L13: 0.2890 L23: -0.6763 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.3437 S13: -0.5393 REMARK 3 S21: -0.4066 S22: 0.0390 S23: 0.3258 REMARK 3 S31: 0.4422 S32: -0.2712 S33: -0.1145 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 39.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE 0.2 M MGCL2 0.2 REMARK 280 M SODIUM FORMATE 20% PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.07000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.99500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.07000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.99500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.82000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.07000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.99500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.82000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.07000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 PHE A 515 REMARK 465 PRO A 673 REMARK 465 ASP A 674 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 VAL A 684 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 LYS A 521 CD CE NZ REMARK 470 ARG A 523 CD NE CZ NH1 NH2 REMARK 470 SER A 536 OG REMARK 470 LYS A 538 CD CE NZ REMARK 470 LEU A 543 CG CD1 CD2 REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 558 CG CD OE1 OE2 REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 ASN A 570 CG OD1 ND2 REMARK 470 LYS A 577 CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 616 CG CD CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 SER A 618 OG REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 GLU A 633 CD OE1 OE2 REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 ASN A 669 CG OD1 ND2 REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 LYS A 696 CD CE NZ REMARK 470 ASP A 697 CG OD1 OD2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 LYS A 731 CD CE NZ REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 ASN A 751 CG OD1 ND2 REMARK 470 GLU A 753 CG CD OE1 OE2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 GLN A 765 CG CD OE1 NE2 REMARK 470 ASP A 766 CG OD1 OD2 REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LYS A 773 CG CD CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 GLN A 778 CD OE1 NE2 REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 749 N HIS A 752 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 646 -0.80 70.22 REMARK 500 ASP A 657 74.51 49.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5O7 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB REMARK 900 5EH0 CONTAINS THE SAME PROTEIN COMPLEXED WITH N2-(2-METHOXY-4-(1- REMARK 900 METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE- REMARK 900 2,8-DIAMINE DBREF 5EI2 A 516 808 UNP P33981 TTK_HUMAN 516 808 SEQADV 5EI2 MET A 496 UNP P33981 INITIATING METHIONINE SEQADV 5EI2 HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 5EI2 HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 5EI2 HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 5EI2 HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 5EI2 HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 5EI2 HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 5EI2 SER A 503 UNP P33981 EXPRESSION TAG SEQADV 5EI2 SER A 504 UNP P33981 EXPRESSION TAG SEQADV 5EI2 GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 5EI2 VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 5EI2 ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 5EI2 LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 5EI2 GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 5EI2 THR A 510 UNP P33981 EXPRESSION TAG SEQADV 5EI2 GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 5EI2 ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 5EI2 LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 5EI2 TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 5EI2 PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 5EI2 GLN A 516 UNP P33981 GLU 516 CONFLICT SEQADV 5EI2 SER A 517 UNP P33981 CYS 517 CONFLICT SEQADV 5EI2 MET A 518 UNP P33981 ILE 518 CONFLICT SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU HET 5O7 A 901 27 HETNAM 5O7 ~{N}-(2,4-DIMETHOXYPHENYL)-8-(1-METHYLPYRAZOL-4-YL) HETNAM 2 5O7 PYRIDO[3,4-D]PYRIMIDIN-2-AMINE FORMUL 2 5O7 C19 H18 N6 O2 FORMUL 3 HOH *13(H2 O) HELIX 1 AA1 ASP A 561 SER A 582 1 22 HELIX 2 AA2 LEU A 609 LYS A 616 1 8 HELIX 3 AA3 ASP A 620 HIS A 641 1 22 HELIX 4 AA4 LYS A 649 ALA A 651 5 3 HELIX 5 AA5 PRO A 691 MET A 698 1 8 HELIX 6 AA6 SER A 712 GLY A 730 1 19 HELIX 7 AA7 ASN A 739 ASP A 749 1 11 HELIX 8 AA8 GLU A 761 LEU A 772 1 12 HELIX 9 AA9 SER A 781 LEU A 786 1 6 HELIX 10 AB1 HIS A 788 ILE A 793 1 6 SHEET 1 AA1 6 SER A 517 VAL A 520 0 SHEET 2 AA1 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518 SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O LEU A 543 N SER A 526 SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 550 N VAL A 542 SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601 SHEET 1 AA2 3 ILE A 607 ASP A 608 0 SHEET 2 AA2 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 AA2 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 SITE 1 AC1 14 LYS A 529 ILE A 531 GLN A 541 ALA A 551 SITE 2 AC1 14 ILE A 586 MET A 602 GLU A 603 CYS A 604 SITE 3 AC1 14 GLY A 605 ASN A 606 ASP A 608 SER A 611 SITE 4 AC1 14 LEU A 654 HOH A1001 CRYST1 69.640 102.140 109.990 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009092 0.00000