PDB Short entry for 5ELI HEADER IMMUNE SYSTEM 04-NOV-15 5ELI TITLE TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TREM-2,TRIGGERING RECEPTOR EXPRESSED ON MONOCYTES 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TREM2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_CELL: EPITHELIAL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS ACTIVATING RECEPTORS, TREM2, INNATE IMMUNITY, IMMUNE SYSTEM RECEPTOR, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.J.BRETT,D.L.KOBER REVDAT 7 27-SEP-23 5ELI 1 HETSYN REVDAT 6 29-JUL-20 5ELI 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 04-DEC-19 5ELI 1 REMARK REVDAT 4 01-NOV-17 5ELI 1 REMARK REVDAT 3 06-SEP-17 5ELI 1 REMARK REVDAT 2 04-JAN-17 5ELI 1 JRNL REVDAT 1 28-DEC-16 5ELI 0 JRNL AUTH D.L.KOBER,J.M.ALEXANDER-BRETT,C.M.KARCH,C.CRUCHAGA, JRNL AUTH 2 M.COLONNA,M.J.HOLTZMAN,T.J.BRETT JRNL TITL NEURODEGENERATIVE DISEASE MUTATIONS IN TREM2 REVEAL A JRNL TITL 2 FUNCTIONAL SURFACE AND DISTINCT LOSS-OF-FUNCTION MECHANISMS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27995897 JRNL DOI 10.7554/ELIFE.20391 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6921 - 5.6248 0.99 2740 145 0.2422 0.2659 REMARK 3 2 5.6248 - 4.4664 1.00 2576 135 0.2195 0.2171 REMARK 3 3 4.4664 - 3.9023 1.00 2532 134 0.2582 0.2655 REMARK 3 4 3.9023 - 3.5458 1.00 2529 132 0.2952 0.2775 REMARK 3 5 3.5458 - 3.2917 1.00 2505 130 0.3073 0.3451 REMARK 3 6 3.2917 - 3.0977 1.00 2482 131 0.3745 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1826 REMARK 3 ANGLE : 1.181 2484 REMARK 3 CHIRALITY : 0.059 284 REMARK 3 PLANARITY : 0.004 314 REMARK 3 DIHEDRAL : 14.639 1076 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6273 14.2105 -20.4624 REMARK 3 T TENSOR REMARK 3 T11: 0.9475 T22: 1.1375 REMARK 3 T33: 0.8778 T12: 0.0583 REMARK 3 T13: 0.2537 T23: 0.1169 REMARK 3 L TENSOR REMARK 3 L11: 4.3476 L22: 4.6598 REMARK 3 L33: 2.0694 L12: 3.0378 REMARK 3 L13: 4.8163 L23: -0.3680 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.9989 S13: -0.1030 REMARK 3 S21: -0.9728 S22: 0.3946 S23: -1.3782 REMARK 3 S31: -0.9190 S32: 1.7022 S33: -0.3540 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.5995 17.4805 -6.1158 REMARK 3 T TENSOR REMARK 3 T11: 1.1101 T22: 0.5007 REMARK 3 T33: 0.7011 T12: -0.1561 REMARK 3 T13: 0.0317 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 9.1589 L22: 6.9655 REMARK 3 L33: 9.4532 L12: -1.0820 REMARK 3 L13: 1.8383 L23: -0.7374 REMARK 3 S TENSOR REMARK 3 S11: 0.6773 S12: -0.1467 S13: 0.9355 REMARK 3 S21: -0.5209 S22: -0.2297 S23: -0.3936 REMARK 3 S31: -1.3944 S32: 0.8116 S33: 0.1806 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.5151 32.9817 -19.1605 REMARK 3 T TENSOR REMARK 3 T11: 1.4628 T22: 1.5922 REMARK 3 T33: 2.0853 T12: -0.1027 REMARK 3 T13: 0.4137 T23: 0.4727 REMARK 3 L TENSOR REMARK 3 L11: 2.0012 L22: 1.0513 REMARK 3 L33: 8.7695 L12: -2.7144 REMARK 3 L13: 4.1481 L23: -0.1725 REMARK 3 S TENSOR REMARK 3 S11: -1.0800 S12: 2.0790 S13: 2.7319 REMARK 3 S21: -0.4493 S22: -0.4643 S23: -0.7516 REMARK 3 S31: 1.9879 S32: 2.1828 S33: 1.7426 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.1279 13.0733 -9.9706 REMARK 3 T TENSOR REMARK 3 T11: 1.1544 T22: 0.4888 REMARK 3 T33: 0.6706 T12: 0.0660 REMARK 3 T13: 0.0703 T23: 0.0950 REMARK 3 L TENSOR REMARK 3 L11: 5.5521 L22: 5.4004 REMARK 3 L33: 2.0878 L12: 2.8751 REMARK 3 L13: -1.7984 L23: -0.2943 REMARK 3 S TENSOR REMARK 3 S11: 0.2135 S12: 0.3495 S13: 1.1171 REMARK 3 S21: 0.3103 S22: -0.1456 S23: 0.4974 REMARK 3 S31: -1.4646 S32: -0.5418 S33: 0.0261 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.2169 10.6045 -13.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.9516 T22: 0.5089 REMARK 3 T33: 0.4984 T12: 0.0566 REMARK 3 T13: 0.0927 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 5.7904 L22: 5.4382 REMARK 3 L33: 3.4202 L12: 2.0204 REMARK 3 L13: -0.9887 L23: 3.4519 REMARK 3 S TENSOR REMARK 3 S11: 0.1777 S12: 0.3889 S13: 0.2857 REMARK 3 S21: -0.5002 S22: -0.6018 S23: -0.4902 REMARK 3 S31: -0.2119 S32: 0.2039 S33: 0.0981 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.3878 19.4832 -19.2155 REMARK 3 T TENSOR REMARK 3 T11: 1.5716 T22: 0.9417 REMARK 3 T33: 0.8093 T12: -0.0258 REMARK 3 T13: 0.2307 T23: 0.2336 REMARK 3 L TENSOR REMARK 3 L11: 4.0961 L22: 2.9472 REMARK 3 L33: 2.8212 L12: 1.9028 REMARK 3 L13: 0.4362 L23: 1.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.4302 S12: 0.6106 S13: 0.8909 REMARK 3 S21: -1.7999 S22: 0.1477 S23: 0.1832 REMARK 3 S31: -1.6838 S32: 0.7318 S33: -0.5620 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9775 20.1225 -18.3546 REMARK 3 T TENSOR REMARK 3 T11: 1.0755 T22: 1.2122 REMARK 3 T33: 0.7196 T12: -0.2227 REMARK 3 T13: 0.2094 T23: 0.1849 REMARK 3 L TENSOR REMARK 3 L11: 3.1638 L22: 8.0654 REMARK 3 L33: 3.4942 L12: 2.2551 REMARK 3 L13: 3.3702 L23: 2.4243 REMARK 3 S TENSOR REMARK 3 S11: 0.7788 S12: 0.8693 S13: 0.7364 REMARK 3 S21: -0.6447 S22: 0.3578 S23: -1.1224 REMARK 3 S31: -1.5866 S32: 0.8421 S33: -0.9612 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.6226 27.0636 -25.7941 REMARK 3 T TENSOR REMARK 3 T11: 1.0445 T22: 1.5618 REMARK 3 T33: 1.0705 T12: 0.2492 REMARK 3 T13: -0.0701 T23: -0.5065 REMARK 3 L TENSOR REMARK 3 L11: 6.2477 L22: 1.9988 REMARK 3 L33: 7.0503 L12: -2.0708 REMARK 3 L13: -2.4228 L23: 4.7820 REMARK 3 S TENSOR REMARK 3 S11: 0.4808 S12: -0.0610 S13: 0.5837 REMARK 3 S21: 1.4549 S22: 0.5584 S23: -1.1499 REMARK 3 S31: 1.8941 S32: 3.1512 S33: -1.0779 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.1305 12.0165 -19.1175 REMARK 3 T TENSOR REMARK 3 T11: 1.0115 T22: 0.7050 REMARK 3 T33: 0.5905 T12: 0.3919 REMARK 3 T13: -0.0293 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.2475 L22: 7.9369 REMARK 3 L33: 7.5054 L12: -0.5394 REMARK 3 L13: 1.9178 L23: -6.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.1405 S12: 0.1986 S13: -0.1056 REMARK 3 S21: -0.0562 S22: -0.2271 S23: -0.4740 REMARK 3 S31: 0.1471 S32: 0.3658 S33: 0.0746 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.0443 15.4114 -23.5929 REMARK 3 T TENSOR REMARK 3 T11: 1.1985 T22: 1.1618 REMARK 3 T33: 0.7557 T12: 0.4554 REMARK 3 T13: -0.1915 T23: -0.0878 REMARK 3 L TENSOR REMARK 3 L11: 7.4178 L22: 8.4268 REMARK 3 L33: 4.2406 L12: -1.9208 REMARK 3 L13: -0.5358 L23: -4.9100 REMARK 3 S TENSOR REMARK 3 S11: 0.7075 S12: 0.1804 S13: 0.5831 REMARK 3 S21: -0.4578 S22: -0.7204 S23: 1.7613 REMARK 3 S31: -1.1861 S32: -1.3855 S33: -0.1367 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.2889 1.0002 -22.9352 REMARK 3 T TENSOR REMARK 3 T11: 1.0862 T22: 0.5668 REMARK 3 T33: 0.5581 T12: 0.1413 REMARK 3 T13: -0.2595 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 9.5806 L22: 8.0958 REMARK 3 L33: 1.3002 L12: -2.2137 REMARK 3 L13: 1.4872 L23: 2.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.2577 S12: -0.3100 S13: -0.0597 REMARK 3 S21: -0.5958 S22: 0.1469 S23: -0.3132 REMARK 3 S31: 1.0752 S32: 0.6112 S33: -0.7543 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.5016 12.8413 -29.5424 REMARK 3 T TENSOR REMARK 3 T11: 1.4123 T22: 1.0073 REMARK 3 T33: 0.5878 T12: 0.5258 REMARK 3 T13: -0.0867 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.3239 L22: 4.3855 REMARK 3 L33: 5.1837 L12: -0.1985 REMARK 3 L13: -0.3962 L23: -3.2085 REMARK 3 S TENSOR REMARK 3 S11: 0.7022 S12: 1.1021 S13: -0.0745 REMARK 3 S21: -1.2966 S22: -0.3086 S23: 0.2925 REMARK 3 S31: 0.5652 S32: -0.5094 S33: -0.1937 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -79.6007 15.9003 -19.5743 REMARK 3 T TENSOR REMARK 3 T11: 1.1992 T22: 0.7536 REMARK 3 T33: 0.6933 T12: 0.3527 REMARK 3 T13: -0.0720 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 3.4944 L22: 4.2529 REMARK 3 L33: 5.1012 L12: -0.1993 REMARK 3 L13: 0.1106 L23: -2.8789 REMARK 3 S TENSOR REMARK 3 S11: 0.3108 S12: 0.4578 S13: 0.4419 REMARK 3 S21: -0.0451 S22: -0.2018 S23: 0.3405 REMARK 3 S31: -0.4349 S32: -1.4223 S33: -0.6338 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.5053 22.4653 -24.6848 REMARK 3 T TENSOR REMARK 3 T11: 1.3379 T22: 0.7668 REMARK 3 T33: 0.6597 T12: 0.4902 REMARK 3 T13: -0.1517 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 3.4690 L22: 5.3268 REMARK 3 L33: 6.0299 L12: -0.6853 REMARK 3 L13: 0.9230 L23: 4.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.6750 S12: -0.2819 S13: -0.2031 REMARK 3 S21: 1.0830 S22: -0.3148 S23: -0.7181 REMARK 3 S31: -2.5453 S32: 0.0768 S33: -0.0273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ELI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16285 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.098 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U9K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NACL, 0.2 M MGCL2, 0.2 M NDSB 201, REMARK 280 100 MM HEPES PH 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.21967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.43933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.21967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 122.43933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.21967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 122.43933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.21967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 122.43933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY SIZE EXCLUSION CHROMATOGRAPHY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 17 REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 PRO A 132 REMARK 465 LEU A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 LYS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 THR B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 PRO B 132 REMARK 465 LEU B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 LYS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 56 -77.53 -96.22 REMARK 500 ASN A 99 77.75 59.93 REMARK 500 GLU B 56 -83.01 -73.62 REMARK 500 ASN B 99 75.77 60.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ELI A 19 133 UNP Q9NZC2 TREM2_HUMAN 19 133 DBREF 5ELI B 19 133 UNP Q9NZC2 TREM2_HUMAN 19 133 SEQADV 5ELI THR A 17 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI GLY A 18 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI GLY A 134 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI THR A 135 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI LYS A 136 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 137 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 138 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 139 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 140 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 141 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS A 142 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI THR B 17 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI GLY B 18 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI GLY B 134 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI THR B 135 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI LYS B 136 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 137 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 138 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 139 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 140 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 141 UNP Q9NZC2 EXPRESSION TAG SEQADV 5ELI HIS B 142 UNP Q9NZC2 EXPRESSION TAG SEQRES 1 A 126 THR GLY HIS ASN THR THR VAL PHE GLN GLY VAL ALA GLY SEQRES 2 A 126 GLN SER LEU GLN VAL SER CYS PRO TYR ASP SER MET LYS SEQRES 3 A 126 HIS TRP GLY ARG ARG LYS ALA TRP CYS ARG GLN LEU GLY SEQRES 4 A 126 GLU LYS GLY PRO CYS GLN ARG VAL VAL SER THR HIS ASN SEQRES 5 A 126 LEU TRP LEU LEU SER PHE LEU ARG ARG TRP ASN GLY SER SEQRES 6 A 126 THR ALA ILE THR ASP ASP THR LEU GLY GLY THR LEU THR SEQRES 7 A 126 ILE THR LEU ARG ASN LEU GLN PRO HIS ASP ALA GLY LEU SEQRES 8 A 126 TYR GLN CYS GLN SER LEU HIS GLY SER GLU ALA ASP THR SEQRES 9 A 126 LEU ARG LYS VAL LEU VAL GLU VAL LEU ALA ASP PRO LEU SEQRES 10 A 126 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 126 THR GLY HIS ASN THR THR VAL PHE GLN GLY VAL ALA GLY SEQRES 2 B 126 GLN SER LEU GLN VAL SER CYS PRO TYR ASP SER MET LYS SEQRES 3 B 126 HIS TRP GLY ARG ARG LYS ALA TRP CYS ARG GLN LEU GLY SEQRES 4 B 126 GLU LYS GLY PRO CYS GLN ARG VAL VAL SER THR HIS ASN SEQRES 5 B 126 LEU TRP LEU LEU SER PHE LEU ARG ARG TRP ASN GLY SER SEQRES 6 B 126 THR ALA ILE THR ASP ASP THR LEU GLY GLY THR LEU THR SEQRES 7 B 126 ILE THR LEU ARG ASN LEU GLN PRO HIS ASP ALA GLY LEU SEQRES 8 B 126 TYR GLN CYS GLN SER LEU HIS GLY SER GLU ALA ASP THR SEQRES 9 B 126 LEU ARG LYS VAL LEU VAL GLU VAL LEU ALA ASP PRO LEU SEQRES 10 B 126 GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG A 201 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) HELIX 1 AA1 LEU A 69 SER A 73 5 5 HELIX 2 AA2 LEU B 69 SER B 73 5 5 HELIX 3 AA3 GLN B 101 ALA B 105 5 5 SHEET 1 AA1 5 THR A 22 VAL A 27 0 SHEET 2 AA1 5 GLU A 117 LEU A 129 1 O LYS A 123 N THR A 22 SHEET 3 AA1 5 GLY A 106 HIS A 114 -1 N SER A 112 O ASP A 119 SHEET 4 AA1 5 ARG A 47 GLN A 53 -1 N GLN A 53 O LEU A 107 SHEET 5 AA1 5 CYS A 60 SER A 65 -1 O VAL A 64 N TRP A 50 SHEET 1 AA2 4 LEU A 32 PRO A 37 0 SHEET 2 AA2 4 THR A 92 LEU A 97 -1 O LEU A 97 N LEU A 32 SHEET 3 AA2 4 THR A 82 ASP A 87 -1 N THR A 85 O THR A 94 SHEET 4 AA2 4 ARG A 77 ASN A 79 -1 N ASN A 79 O THR A 82 SHEET 1 AA3 5 THR B 22 VAL B 27 0 SHEET 2 AA3 5 GLU B 117 LEU B 129 1 O GLU B 127 N PHE B 24 SHEET 3 AA3 5 GLY B 106 HIS B 114 -1 N CYS B 110 O ARG B 122 SHEET 4 AA3 5 ARG B 47 GLN B 53 -1 N ARG B 47 O LEU B 113 SHEET 5 AA3 5 CYS B 60 SER B 65 -1 O VAL B 64 N TRP B 50 SHEET 1 AA4 4 LEU B 32 PRO B 37 0 SHEET 2 AA4 4 THR B 92 LEU B 97 -1 O LEU B 97 N LEU B 32 SHEET 3 AA4 4 THR B 82 ASP B 87 -1 N THR B 85 O THR B 94 SHEET 4 AA4 4 ARG B 77 ASN B 79 -1 N ASN B 79 O THR B 82 SSBOND 1 CYS A 36 CYS A 110 1555 1555 2.06 SSBOND 2 CYS A 51 CYS A 60 1555 1555 2.10 SSBOND 3 CYS B 36 CYS B 110 1555 1555 2.08 SSBOND 4 CYS B 51 CYS B 60 1555 1555 2.09 LINK ND2 ASN A 79 C1 NAG A 201 1555 1555 1.45 LINK ND2 ASN B 79 C1 NAG B 201 1555 1555 1.44 CISPEP 1 GLY A 58 PRO A 59 0 -2.18 CISPEP 2 GLY B 58 PRO B 59 0 0.75 CRYST1 125.763 125.763 183.659 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007951 0.004591 0.000000 0.00000 SCALE2 0.000000 0.009182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005445 0.00000