PDB Short entry for 5EMP HEADER TRANSCRIPTION/DNA 06-NOV-15 5EMP TITLE TRANSCRIPTION FACTOR GRDBD AND MMGRE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 411-500; COMPND 5 SYNONYM: GR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*CP*CP*AP*GP*AP*AP*CP*AP*TP*(5CM) COMPND 14 P*AP*TP*GP*TP*TP*CP*TP*G)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR3C1, GRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPHIS4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182038; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, COMPLEX, DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.LIAN,J.JIN,X.SU REVDAT 3 20-MAR-24 5EMP 1 REMARK REVDAT 2 04-OCT-17 5EMP 1 REMARK REVDAT 1 29-JUN-16 5EMP 0 JRNL AUTH T.LIAN,J.JIN,X.SU JRNL TITL THE EFFECTS OF CYTOSINE METHYLATION ON GENERAL TRANSCRIPTION JRNL TITL 2 FACTORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0122 - 4.3973 0.99 2908 147 0.1626 0.2227 REMARK 3 2 4.3973 - 3.4913 0.99 2749 165 0.1732 0.2117 REMARK 3 3 3.4913 - 3.0502 0.98 2713 144 0.2068 0.2621 REMARK 3 4 3.0502 - 2.7715 1.00 2754 128 0.2317 0.2648 REMARK 3 5 2.7715 - 2.5729 1.00 2715 161 0.2250 0.2517 REMARK 3 6 2.5729 - 2.4213 1.00 2704 153 0.2367 0.2743 REMARK 3 7 2.4213 - 2.3000 1.00 2716 141 0.2432 0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1931 REMARK 3 ANGLE : 1.453 2746 REMARK 3 CHIRALITY : 0.073 297 REMARK 3 PLANARITY : 0.004 226 REMARK 3 DIHEDRAL : 25.330 768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.2051 11.9377 -7.0734 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.2638 REMARK 3 T33: 0.3050 T12: -0.0353 REMARK 3 T13: 0.0003 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.1608 L22: 1.3401 REMARK 3 L33: 2.7694 L12: -0.2570 REMARK 3 L13: 0.6405 L23: 0.3888 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.0257 S13: -0.2647 REMARK 3 S21: -0.1852 S22: 0.0714 S23: 0.0132 REMARK 3 S31: 0.6467 S32: -0.1424 S33: -0.1450 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.584 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS, 200MM KCL, 50MM MGCL2, 10% REMARK 280 PEG 4000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.02150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.24600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.02150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.63950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.24600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 426 REMARK 465 SER A 427 REMARK 465 HIS A 428 REMARK 465 MET A 429 REMARK 465 THR A 430 REMARK 465 ALA A 431 REMARK 465 THR A 432 REMARK 465 THR A 433 REMARK 465 GLY A 434 REMARK 465 PRO A 435 REMARK 465 PRO A 436 REMARK 465 PRO A 437 REMARK 465 ALA A 509 REMARK 465 ARG A 510 REMARK 465 LYS A 511 REMARK 465 THR A 512 REMARK 465 LYS A 513 REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 ILE A 516 REMARK 465 LYS A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 GLY B 426 REMARK 465 SER B 427 REMARK 465 HIS B 428 REMARK 465 MET B 429 REMARK 465 THR B 430 REMARK 465 ALA B 431 REMARK 465 THR B 432 REMARK 465 THR B 433 REMARK 465 GLY B 434 REMARK 465 PRO B 435 REMARK 465 PRO B 436 REMARK 465 PRO B 437 REMARK 465 ARG B 510 REMARK 465 LYS B 511 REMARK 465 THR B 512 REMARK 465 LYS B 513 REMARK 465 LYS B 514 REMARK 465 LYS B 515 REMARK 465 ILE B 516 REMARK 465 LYS B 517 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 470 GLN A 471 CG CD OE1 NE2 REMARK 470 ASN A 473 CG OD1 ND2 REMARK 470 GLN B 471 CG CD OE1 NE2 REMARK 470 ASN B 473 CG OD1 ND2 REMARK 470 ALA B 509 CA C O CB REMARK 470 DT D 10 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 DG C 10 O2 5CM D 11 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 715 O HOH B 725 4555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 8 O3' DT C 9 P -0.090 REMARK 500 DT C 12 O3' DG C 13 P -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 438 N - CA - C ANGL. DEV. = 26.2 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT D 16 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 472 96.26 37.20 REMARK 500 ASP A 481 42.20 -146.22 REMARK 500 HIS B 472 -64.62 -125.20 REMARK 500 ASP B 481 42.44 -142.51 REMARK 500 GLU B 508 -118.03 63.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 114.5 REMARK 620 3 CYS A 457 SG 110.9 104.5 REMARK 620 4 CYS A 460 SG 110.1 115.6 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 105.4 REMARK 620 3 CYS A 492 SG 110.8 115.7 REMARK 620 4 CYS A 495 SG 110.4 110.1 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 110.1 REMARK 620 3 CYS B 457 SG 115.7 106.2 REMARK 620 4 CYS B 460 SG 114.3 110.2 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 103.8 REMARK 620 3 CYS B 492 SG 112.1 114.0 REMARK 620 4 CYS B 495 SG 106.5 110.8 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DT D 10 and 5CM D REMARK 800 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 5CM D 11 and DA D REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EMC RELATED DB: PDB REMARK 900 RELATED ID: 5EMQ RELATED DB: PDB DBREF 5EMP A 430 519 UNP P04150 GCR_HUMAN 411 500 DBREF 5EMP B 430 519 UNP P04150 GCR_HUMAN 411 500 DBREF 5EMP C 1 18 PDB 5EMP 5EMP 1 18 DBREF 5EMP D 2 19 PDB 5EMP 5EMP 2 19 SEQADV 5EMP GLY A 426 UNP P04150 EXPRESSION TAG SEQADV 5EMP SER A 427 UNP P04150 EXPRESSION TAG SEQADV 5EMP HIS A 428 UNP P04150 EXPRESSION TAG SEQADV 5EMP MET A 429 UNP P04150 EXPRESSION TAG SEQADV 5EMP GLY B 426 UNP P04150 EXPRESSION TAG SEQADV 5EMP SER B 427 UNP P04150 EXPRESSION TAG SEQADV 5EMP HIS B 428 UNP P04150 EXPRESSION TAG SEQADV 5EMP MET B 429 UNP P04150 EXPRESSION TAG SEQRES 1 A 94 GLY SER HIS MET THR ALA THR THR GLY PRO PRO PRO LYS SEQRES 2 A 94 LEU CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS HIS SEQRES 3 A 94 TYR GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE PHE SEQRES 4 A 94 LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS ALA SEQRES 5 A 94 GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE ARG ARG LYS SEQRES 6 A 94 ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN ALA SEQRES 7 A 94 GLY MET ASN LEU GLU ALA ARG LYS THR LYS LYS LYS ILE SEQRES 8 A 94 LYS GLY ILE SEQRES 1 B 94 GLY SER HIS MET THR ALA THR THR GLY PRO PRO PRO LYS SEQRES 2 B 94 LEU CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS HIS SEQRES 3 B 94 TYR GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE PHE SEQRES 4 B 94 LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS ALA SEQRES 5 B 94 GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE ARG ARG LYS SEQRES 6 B 94 ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN ALA SEQRES 7 B 94 GLY MET ASN LEU GLU ALA ARG LYS THR LYS LYS LYS ILE SEQRES 8 B 94 LYS GLY ILE SEQRES 1 C 18 DC DC DA DG DA DA DC DA DT DG DA DT DG SEQRES 2 C 18 DT DT DC DT DG SEQRES 1 D 18 DC DC DA DG DA DA DC DA DT 5CM DA DT DG SEQRES 2 D 18 DT DT DC DT DG HET 5CM D 11 20 HET ZN A 601 1 HET ZN A 602 1 HET ZN B 601 1 HET ZN B 602 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 4 5CM C10 H16 N3 O7 P FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *47(H2 O) HELIX 1 AA1 CYS A 457 GLU A 469 1 13 HELIX 2 AA2 ILE A 487 ASN A 491 5 5 HELIX 3 AA3 CYS A 492 GLY A 504 1 13 HELIX 4 AA4 CYS B 457 GLY B 470 1 14 HELIX 5 AA5 CYS B 492 GLY B 504 1 13 SHEET 1 AA1 2 GLY A 449 HIS A 451 0 SHEET 2 AA1 2 VAL A 454 THR A 456 -1 O VAL A 454 N HIS A 451 SHEET 1 AA2 2 GLY B 449 HIS B 451 0 SHEET 2 AA2 2 VAL B 454 THR B 456 -1 O VAL B 454 N HIS B 451 LINK O3' DT D 10 P 5CM D 11 1555 1555 1.59 LINK O3' 5CM D 11 P DA D 12 1555 1555 1.57 LINK SG CYS A 440 ZN ZN A 601 1555 1555 2.27 LINK SG CYS A 443 ZN ZN A 601 1555 1555 2.32 LINK SG CYS A 457 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 460 ZN ZN A 601 1555 1555 2.31 LINK SG CYS A 476 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 482 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 492 ZN ZN A 602 1555 1555 2.32 LINK SG CYS A 495 ZN ZN A 602 1555 1555 2.34 LINK SG CYS B 440 ZN ZN B 601 1555 1555 2.27 LINK SG CYS B 443 ZN ZN B 601 1555 1555 2.38 LINK SG CYS B 457 ZN ZN B 601 1555 1555 2.36 LINK SG CYS B 460 ZN ZN B 601 1555 1555 2.30 LINK SG CYS B 476 ZN ZN B 602 1555 1555 2.32 LINK SG CYS B 482 ZN ZN B 602 1555 1555 2.30 LINK SG CYS B 492 ZN ZN B 602 1555 1555 2.31 LINK SG CYS B 495 ZN ZN B 602 1555 1555 2.36 SITE 1 AC1 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC2 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 1 AC3 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC4 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 SITE 1 AC5 5 DT C 9 DG C 10 DA C 11 DA D 9 SITE 2 AC5 5 DA D 12 SITE 1 AC6 5 DT C 9 DG C 10 DA C 11 DT D 10 SITE 2 AC6 5 DT D 13 CRYST1 39.279 100.492 112.043 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008925 0.00000