PDB Short entry for 5ENB HEADER SIGNALING PROTEIN 09-NOV-15 5ENB TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF PLECKSTRIN HOMOLOGY TITLE 2 DOMAIN INTERACTING PROTEIN (PHIP) IN COMPLEX WITH O-TOLYLTHIOUREA TITLE 3 (SGC - DIAMOND I04-1 FRAGMENT SCREENING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PH-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 SYNONYM: PHIP,IRS-1 PH DOMAIN-BINDING PROTEIN,WD REPEAT-CONTAINING COMPND 6 PROTEIN 11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHIP, WDR11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, PHIP, CRYSTALLOGRAPHIC FRAGMENT SCREEN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,R.TALON,P.COLLINS,A.BRADLEY,O.COX,A.SZYKOWSKA,N.BURGESS- AUTHOR 2 BROWN,P.BRENNAN,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,F.VON DELFT, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5ENB 1 REMARK REVDAT 2 11-JUL-18 5ENB 1 JRNL REVDAT 1 27-APR-16 5ENB 0 JRNL AUTH O.B.COX,T.KROJER,P.COLLINS,O.MONTEIRO,R.TALON,A.BRADLEY, JRNL AUTH 2 O.FEDOROV,J.AMIN,B.D.MARSDEN,J.SPENCER,F.VON DELFT, JRNL AUTH 3 P.E.BRENNAN JRNL TITL A POISED FRAGMENT LIBRARY ENABLES RAPID SYNTHETIC EXPANSION JRNL TITL 2 YIELDING THE FIRST REPORTED INHIBITORS OF PHIP(2), AN JRNL TITL 3 ATYPICAL BROMODOMAIN. JRNL REF CHEM SCI V. 7 2322 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 29910922 JRNL DOI 10.1039/C5SC03115J REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1042 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 952 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1406 ; 1.733 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2193 ; 1.052 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 6.338 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;30.799 ;23.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 177 ;14.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1216 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 247 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 496 ; 1.842 ; 2.864 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 497 ; 1.841 ; 2.868 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 2.675 ; 4.288 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1313 A 1319 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6363 20.7348 -11.4621 REMARK 3 T TENSOR REMARK 3 T11: 0.0174 T22: 0.0343 REMARK 3 T33: 0.1267 T12: -0.0219 REMARK 3 T13: 0.0398 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 4.8364 L22: 6.9078 REMARK 3 L33: 2.5700 L12: 2.5113 REMARK 3 L13: 0.4614 L23: -3.5227 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: -0.1005 S13: -0.1618 REMARK 3 S21: 0.0122 S22: -0.1827 S23: -0.4389 REMARK 3 S31: -0.0281 S32: 0.0778 S33: 0.2281 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1320 A 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2705 15.7623 -5.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.0707 REMARK 3 T33: 0.1201 T12: -0.0110 REMARK 3 T13: 0.0017 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 3.0241 L22: 0.4247 REMARK 3 L33: 0.9336 L12: 0.6066 REMARK 3 L13: 0.5577 L23: 0.4963 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.2959 S13: 0.2581 REMARK 3 S21: -0.0092 S22: -0.0208 S23: -0.0501 REMARK 3 S31: 0.0206 S32: -0.1167 S33: 0.0643 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1342 A 1362 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6651 -2.3427 -6.9632 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.2100 REMARK 3 T33: 0.1631 T12: 0.0006 REMARK 3 T13: 0.0687 T23: 0.1365 REMARK 3 L TENSOR REMARK 3 L11: 1.6446 L22: 4.9596 REMARK 3 L33: 0.0665 L12: 0.7660 REMARK 3 L13: 0.2317 L23: 0.5005 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.4702 S13: -0.4823 REMARK 3 S21: 0.5842 S22: 0.1023 S23: 0.0330 REMARK 3 S31: 0.0400 S32: -0.0339 S33: -0.0512 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1363 A 1395 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4484 6.8505 -10.7804 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.0849 REMARK 3 T33: 0.0199 T12: -0.0684 REMARK 3 T13: -0.0119 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.3031 L22: 0.7375 REMARK 3 L33: 0.5040 L12: 0.3710 REMARK 3 L13: 0.8619 L23: 0.4450 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.0253 S13: 0.0271 REMARK 3 S21: 0.0848 S22: 0.0920 S23: -0.0877 REMARK 3 S31: 0.0813 S32: -0.0071 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1396 A 1435 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3143 14.9735 -16.3089 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: 0.0415 REMARK 3 T33: 0.0821 T12: -0.0350 REMARK 3 T13: 0.0028 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.1175 L22: 0.6161 REMARK 3 L33: 0.4489 L12: 1.0321 REMARK 3 L13: -0.1972 L23: 0.3428 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.1098 S13: 0.1656 REMARK 3 S21: -0.0635 S22: 0.0228 S23: 0.0489 REMARK 3 S31: -0.0411 S32: -0.0265 S33: 0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ENB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 22.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3MB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5 , 0.15M MAGNESIUM REMARK 280 CHLORIDE , 30% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1310 REMARK 465 PHE A 1311 REMARK 465 GLN A 1312 REMARK 465 THR A 1436 REMARK 465 ILE A 1437 REMARK 465 THR A 1438 REMARK 465 LYS A 1439 REMARK 465 ARG A 1440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1313 OG REMARK 470 GLU A1336 CG CD OE1 OE2 REMARK 470 GLU A1376 CG CD OE1 OE2 REMARK 470 ARG A1430 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1433 CG CD CE NZ REMARK 470 ARG A1434 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1400 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1347 -49.29 -28.60 REMARK 500 TYR A1350 78.28 -115.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1313 MET A 1314 -145.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5Q5 A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1503 DBREF 5ENB A 1315 1440 UNP Q8WWQ0 PHIP_HUMAN 1315 1440 SEQADV 5ENB TYR A 1310 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENB PHE A 1311 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENB GLN A 1312 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENB SER A 1313 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENB MET A 1314 UNP Q8WWQ0 EXPRESSION TAG SEQRES 1 A 131 TYR PHE GLN SER MET SER TYR ASP ILE GLN ALA TRP LYS SEQRES 2 A 131 LYS GLN CYS GLU GLU LEU LEU ASN LEU ILE PHE GLN CYS SEQRES 3 A 131 GLU ASP SER GLU PRO PHE ARG GLN PRO VAL ASP LEU LEU SEQRES 4 A 131 GLU TYR PRO ASP TYR ARG ASP ILE ILE ASP THR PRO MET SEQRES 5 A 131 ASP PHE ALA THR VAL ARG GLU THR LEU GLU ALA GLY ASN SEQRES 6 A 131 TYR GLU SER PRO MET GLU LEU CYS LYS ASP VAL ARG LEU SEQRES 7 A 131 ILE PHE SER ASN SER LYS ALA TYR THR PRO SER LYS ARG SEQRES 8 A 131 SER ARG ILE TYR SER MET SER LEU ARG LEU SER ALA PHE SEQRES 9 A 131 PHE GLU GLU HIS ILE SER SER VAL LEU SER ASP TYR LYS SEQRES 10 A 131 SER ALA LEU ARG PHE HIS LYS ARG ASN THR ILE THR LYS SEQRES 11 A 131 ARG HET 5Q5 A1501 11 HET EDO A1502 4 HET EDO A1503 4 HETNAM 5Q5 1-(2-METHYLPHENYL)THIOUREA HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5Q5 C8 H10 N2 S FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *105(H2 O) HELIX 1 AA1 ALA A 1320 CYS A 1335 1 16 HELIX 2 AA2 GLU A 1336 ARG A 1342 5 7 HELIX 3 AA3 ASP A 1352 ILE A 1357 1 6 HELIX 4 AA4 ASP A 1362 ALA A 1372 1 11 HELIX 5 AA5 SER A 1377 THR A 1396 1 20 HELIX 6 AA6 SER A 1401 ASN A 1435 1 35 SITE 1 AC1 10 PRO A1340 PHE A1341 VAL A1345 TYR A1350 SITE 2 AC1 10 TYR A1353 SER A1392 TYR A1395 ILE A1403 SITE 3 AC1 10 HOH A1613 HOH A1631 SITE 1 AC2 4 ASP A1346 GLU A1349 SER A1398 ARG A1400 SITE 1 AC3 7 GLU A1326 ARG A1386 HOH A1601 HOH A1617 SITE 2 AC3 7 HOH A1623 HOH A1656 HOH A1674 CRYST1 60.300 92.170 24.250 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.041237 0.00000