PDB Short entry for 5EQX HEADER CELL ADHESION 13-NOV-15 5EQX TITLE CRYSTAL STRUCTURE OF HUMAN DESMOGLEIN-3 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESMOGLEIN-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 130 KDA PEMPHIGUS VULGARIS ANTIGEN,PVA,CADHERIN FAMILY COMPND 5 MEMBER 6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DSG3, CDHF6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS EXTRACELLULAR CADHERIN DOMAIN, CELL ADHESION, CELL SURFACE, DESMOSOME EXPDTA X-RAY DIFFRACTION AUTHOR O.J.HARRISON,J.BRASCH,L.SHAPIRO REVDAT 6 29-JUL-20 5EQX 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 25-DEC-19 5EQX 1 REMARK REVDAT 4 20-SEP-17 5EQX 1 JRNL REMARK REVDAT 3 13-JUL-16 5EQX 1 JRNL REVDAT 2 29-JUN-16 5EQX 1 JRNL REVDAT 1 15-JUN-16 5EQX 0 JRNL AUTH O.J.HARRISON,J.BRASCH,G.LASSO,P.S.KATSAMBA,G.AHLSEN,B.HONIG, JRNL AUTH 2 L.SHAPIRO JRNL TITL STRUCTURAL BASIS OF ADHESIVE BINDING BY DESMOCOLLINS AND JRNL TITL 2 DESMOGLEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 7160 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27298358 JRNL DOI 10.1073/PNAS.1606272113 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1810 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9217 - 5.2129 1.00 2911 154 0.2138 0.2459 REMARK 3 2 5.2129 - 4.1390 1.00 2791 147 0.1939 0.2177 REMARK 3 3 4.1390 - 3.6162 1.00 2803 147 0.2282 0.2464 REMARK 3 4 3.6162 - 3.2858 1.00 2770 146 0.2921 0.3973 REMARK 3 5 3.2858 - 3.0504 1.00 2767 145 0.3535 0.4185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3598 REMARK 3 ANGLE : 0.809 4881 REMARK 3 CHIRALITY : 0.030 576 REMARK 3 PLANARITY : 0.003 627 REMARK 3 DIHEDRAL : 15.324 1364 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14791 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG10000, 0.15M AMMONIUM REMARK 280 FORMATE PH6.7, 0.01M CALCIUM CHLORIDE, 30 (V/V) ETHYLENE GLYCOL REMARK 280 (CRYOPROTECTANT)., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 440 REMARK 465 ASP A 441 REMARK 465 ASN A 442 REMARK 465 CYS A 443 REMARK 465 PRO A 444 REMARK 465 THR A 445 REMARK 465 ALA A 446 REMARK 465 VAL A 447 REMARK 465 LEU A 448 REMARK 465 GLU A 449 REMARK 465 LYS A 450 REMARK 465 ASP A 451 REMARK 465 ALA A 452 REMARK 465 VAL A 453 REMARK 465 CYS A 454 REMARK 465 SER A 455 REMARK 465 SER A 456 REMARK 465 SER A 457 REMARK 465 PRO A 458 REMARK 465 SER A 459 REMARK 465 VAL A 460 REMARK 465 VAL A 461 REMARK 465 VAL A 462 REMARK 465 SER A 463 REMARK 465 ALA A 464 REMARK 465 ARG A 465 REMARK 465 THR A 466 REMARK 465 LEU A 467 REMARK 465 ASN A 468 REMARK 465 ASN A 469 REMARK 465 ARG A 470 REMARK 465 TYR A 471 REMARK 465 THR A 472 REMARK 465 GLY A 473 REMARK 465 PRO A 474 REMARK 465 TYR A 475 REMARK 465 THR A 476 REMARK 465 PHE A 477 REMARK 465 ALA A 478 REMARK 465 LEU A 479 REMARK 465 GLU A 480 REMARK 465 ASP A 481 REMARK 465 GLN A 482 REMARK 465 PRO A 483 REMARK 465 VAL A 484 REMARK 465 LYS A 485 REMARK 465 LEU A 486 REMARK 465 PRO A 487 REMARK 465 ALA A 488 REMARK 465 VAL A 489 REMARK 465 TRP A 490 REMARK 465 SER A 491 REMARK 465 ILE A 492 REMARK 465 THR A 493 REMARK 465 THR A 494 REMARK 465 LEU A 495 REMARK 465 ASN A 496 REMARK 465 ALA A 497 REMARK 465 THR A 498 REMARK 465 SER A 499 REMARK 465 ALA A 500 REMARK 465 LEU A 501 REMARK 465 LEU A 502 REMARK 465 ARG A 503 REMARK 465 ALA A 504 REMARK 465 GLN A 505 REMARK 465 GLU A 506 REMARK 465 GLN A 507 REMARK 465 ILE A 508 REMARK 465 PRO A 509 REMARK 465 PRO A 510 REMARK 465 GLY A 511 REMARK 465 VAL A 512 REMARK 465 TYR A 513 REMARK 465 HIS A 514 REMARK 465 ILE A 515 REMARK 465 SER A 516 REMARK 465 LEU A 517 REMARK 465 VAL A 518 REMARK 465 LEU A 519 REMARK 465 THR A 520 REMARK 465 ASP A 521 REMARK 465 SER A 522 REMARK 465 GLN A 523 REMARK 465 ASN A 524 REMARK 465 ASN A 525 REMARK 465 ARG A 526 REMARK 465 CYS A 527 REMARK 465 GLU A 528 REMARK 465 MET A 529 REMARK 465 PRO A 530 REMARK 465 ARG A 531 REMARK 465 SER A 532 REMARK 465 LEU A 533 REMARK 465 THR A 534 REMARK 465 LEU A 535 REMARK 465 GLU A 536 REMARK 465 VAL A 537 REMARK 465 CYS A 538 REMARK 465 GLN A 539 REMARK 465 CYS A 540 REMARK 465 ASP A 541 REMARK 465 ASN A 542 REMARK 465 ARG A 543 REMARK 465 GLY A 544 REMARK 465 ILE A 545 REMARK 465 CYS A 546 REMARK 465 GLY A 547 REMARK 465 THR A 548 REMARK 465 SER A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 416 O6 MAN A 612 1.26 REMARK 500 O SER A 405 HG1 THR A 406 1.38 REMARK 500 OE2 GLU A 416 HO6 MAN A 612 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 43 -70.45 -133.09 REMARK 500 VAL A 127 -63.50 -102.89 REMARK 500 ALA A 155 -162.98 -163.45 REMARK 500 GLU A 196 41.12 -102.24 REMARK 500 TRP A 252 -29.26 -142.33 REMARK 500 ASN A 262 42.66 -90.13 REMARK 500 ASN A 276 -5.95 71.09 REMARK 500 LEU A 291 97.12 -165.83 REMARK 500 SER A 293 107.40 -172.95 REMARK 500 SER A 318 76.78 58.68 REMARK 500 ARG A 329 92.56 -65.68 REMARK 500 LYS A 351 52.39 -146.44 REMARK 500 THR A 367 -150.72 -112.40 REMARK 500 ASN A 368 15.53 -145.07 REMARK 500 ARG A 380 56.94 32.44 REMARK 500 LYS A 391 -48.27 -137.90 REMARK 500 VAL A 398 23.66 -143.24 REMARK 500 ASN A 400 -159.17 -115.06 REMARK 500 MET A 401 179.21 59.80 REMARK 500 THR A 406 -62.86 76.87 REMARK 500 VAL A 409 -83.26 -118.80 REMARK 500 LYS A 411 -14.31 85.50 REMARK 500 THR A 424 -57.34 -145.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 88.5 REMARK 620 3 GLU A 69 OE2 101.3 50.3 REMARK 620 4 ASP A 100 OD1 99.6 131.8 81.5 REMARK 620 5 ILE A 101 O 96.1 139.4 160.6 87.3 REMARK 620 6 ASP A 103 OD1 95.2 70.1 116.9 153.5 69.3 REMARK 620 7 ASP A 136 OD1 169.8 88.5 84.1 89.6 80.0 74.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 78.3 REMARK 620 3 ASP A 67 OD2 84.7 44.0 REMARK 620 4 GLU A 69 OE1 70.9 136.8 102.6 REMARK 620 5 ASP A 103 OD2 87.4 111.5 155.4 96.8 REMARK 620 6 HOH A 746 O 151.8 78.4 67.5 118.2 115.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 109.9 REMARK 620 3 ASP A 134 OD1 151.2 78.5 REMARK 620 4 ASP A 134 OD2 153.1 87.1 50.3 REMARK 620 5 ASP A 136 OD2 79.9 79.3 74.6 124.8 REMARK 620 6 ASN A 142 O 85.3 162.2 83.8 82.3 95.1 REMARK 620 7 ASP A 192 OD2 71.9 94.6 136.2 86.6 147.2 99.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 608 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 ASP A 177 OD1 72.7 REMARK 620 3 GLU A 179 OE2 65.1 80.3 REMARK 620 4 ASP A 213 OD2 105.6 145.1 68.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 609 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE1 REMARK 620 2 GLU A 179 OE1 95.4 REMARK 620 3 GLU A 179 OE2 85.0 48.7 REMARK 620 4 ASP A 210 OD1 92.5 82.9 130.8 REMARK 620 5 VAL A 211 O 89.4 169.7 141.1 87.9 REMARK 620 6 ASP A 213 OD1 63.6 116.8 69.5 149.1 73.5 REMARK 620 7 ASP A 245 OD1 162.1 91.6 87.4 104.7 86.3 98.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 212 OD1 REMARK 620 2 ASN A 214 O 88.8 REMARK 620 3 ASP A 243 OD1 148.4 91.2 REMARK 620 4 ASP A 243 OD2 158.5 102.1 51.0 REMARK 620 5 ASP A 245 OD2 75.2 83.5 73.4 124.0 REMARK 620 6 ASN A 251 O 84.3 154.7 82.3 92.7 71.2 REMARK 620 7 ASN A 302 OD1 72.2 97.6 138.9 87.9 147.4 103.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 610 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 229 OE1 REMARK 620 2 GLU A 289 OE2 100.9 REMARK 620 3 ASN A 327 OD1 74.1 72.8 REMARK 620 4 VAL A 328 O 89.1 169.4 107.2 REMARK 620 5 GLU A 330 OE1 74.6 78.3 131.8 108.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 611 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 229 OE2 REMARK 620 2 ASP A 287 OD1 101.3 REMARK 620 3 ASP A 287 OD2 104.6 53.5 REMARK 620 4 GLU A 289 OE1 69.4 114.4 66.3 REMARK 620 5 GLU A 330 OE1 74.5 155.6 150.9 87.0 REMARK 620 6 GLU A 330 OE2 94.9 103.1 151.7 141.3 54.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ERD RELATED DB: PDB REMARK 900 RELATED ID: 5ERP RELATED DB: PDB DBREF 5EQX A 1 549 UNP P32926 DSG3_HUMAN 50 598 SEQADV 5EQX HIS A 550 UNP P32926 EXPRESSION TAG SEQADV 5EQX HIS A 551 UNP P32926 EXPRESSION TAG SEQADV 5EQX HIS A 552 UNP P32926 EXPRESSION TAG SEQADV 5EQX HIS A 553 UNP P32926 EXPRESSION TAG SEQADV 5EQX HIS A 554 UNP P32926 EXPRESSION TAG SEQADV 5EQX HIS A 555 UNP P32926 EXPRESSION TAG SEQRES 1 A 555 GLU TRP VAL LYS PHE ALA LYS PRO CYS ARG GLU GLY GLU SEQRES 2 A 555 ASP ASN SER LYS ARG ASN PRO ILE ALA LYS ILE THR SER SEQRES 3 A 555 ASP TYR GLN ALA THR GLN LYS ILE THR TYR ARG ILE SER SEQRES 4 A 555 GLY VAL GLY ILE ASP GLN PRO PRO PHE GLY ILE PHE VAL SEQRES 5 A 555 VAL ASP LYS ASN THR GLY ASP ILE ASN ILE THR ALA ILE SEQRES 6 A 555 VAL ASP ARG GLU GLU THR PRO SER PHE LEU ILE THR CYS SEQRES 7 A 555 ARG ALA LEU ASN ALA GLN GLY LEU ASP VAL GLU LYS PRO SEQRES 8 A 555 LEU ILE LEU THR VAL LYS ILE LEU ASP ILE ASN ASP ASN SEQRES 9 A 555 PRO PRO VAL PHE SER GLN GLN ILE PHE MET GLY GLU ILE SEQRES 10 A 555 GLU GLU ASN SER ALA SER ASN SER LEU VAL MET ILE LEU SEQRES 11 A 555 ASN ALA THR ASP ALA ASP GLU PRO ASN HIS LEU ASN SER SEQRES 12 A 555 LYS ILE ALA PHE LYS ILE VAL SER GLN GLU PRO ALA GLY SEQRES 13 A 555 THR PRO MET PHE LEU LEU SER ARG ASN THR GLY GLU VAL SEQRES 14 A 555 ARG THR LEU THR ASN SER LEU ASP ARG GLU GLN ALA SER SEQRES 15 A 555 SER TYR ARG LEU VAL VAL SER GLY ALA ASP LYS ASP GLY SEQRES 16 A 555 GLU GLY LEU SER THR GLN CYS GLU CYS ASN ILE LYS VAL SEQRES 17 A 555 LYS ASP VAL ASN ASP ASN PHE PRO MET PHE ARG ASP SER SEQRES 18 A 555 GLN TYR SER ALA ARG ILE GLU GLU ASN ILE LEU SER SER SEQRES 19 A 555 GLU LEU LEU ARG PHE GLN VAL THR ASP LEU ASP GLU GLU SEQRES 20 A 555 TYR THR ASP ASN TRP LEU ALA VAL TYR PHE PHE THR SER SEQRES 21 A 555 GLY ASN GLU GLY ASN TRP PHE GLU ILE GLN THR ASP PRO SEQRES 22 A 555 ARG THR ASN GLU GLY ILE LEU LYS VAL VAL LYS ALA LEU SEQRES 23 A 555 ASP TYR GLU GLN LEU GLN SER VAL LYS LEU SER ILE ALA SEQRES 24 A 555 VAL LYS ASN LYS ALA GLU PHE HIS GLN SER VAL ILE SER SEQRES 25 A 555 ARG TYR ARG VAL GLN SER THR PRO VAL THR ILE GLN VAL SEQRES 26 A 555 ILE ASN VAL ARG GLU GLY ILE ALA PHE ARG PRO ALA SER SEQRES 27 A 555 LYS THR PHE THR VAL GLN LYS GLY ILE SER SER LYS LYS SEQRES 28 A 555 LEU VAL ASP TYR ILE LEU GLY THR TYR GLN ALA ILE ASP SEQRES 29 A 555 GLU ASP THR ASN LYS ALA ALA SER ASN VAL LYS TYR VAL SEQRES 30 A 555 MET GLY ARG ASN ASP GLY GLY TYR LEU MET ILE ASP SER SEQRES 31 A 555 LYS THR ALA GLU ILE LYS PHE VAL LYS ASN MET ASN ARG SEQRES 32 A 555 ASP SER THR PHE ILE VAL ASN LYS THR ILE THR ALA GLU SEQRES 33 A 555 VAL LEU ALA ILE ASP GLU TYR THR GLY LYS THR SER THR SEQRES 34 A 555 GLY THR VAL TYR VAL ARG VAL PRO ASP PHE ASN ASP ASN SEQRES 35 A 555 CYS PRO THR ALA VAL LEU GLU LYS ASP ALA VAL CYS SER SEQRES 36 A 555 SER SER PRO SER VAL VAL VAL SER ALA ARG THR LEU ASN SEQRES 37 A 555 ASN ARG TYR THR GLY PRO TYR THR PHE ALA LEU GLU ASP SEQRES 38 A 555 GLN PRO VAL LYS LEU PRO ALA VAL TRP SER ILE THR THR SEQRES 39 A 555 LEU ASN ALA THR SER ALA LEU LEU ARG ALA GLN GLU GLN SEQRES 40 A 555 ILE PRO PRO GLY VAL TYR HIS ILE SER LEU VAL LEU THR SEQRES 41 A 555 ASP SER GLN ASN ASN ARG CYS GLU MET PRO ARG SER LEU SEQRES 42 A 555 THR LEU GLU VAL CYS GLN CYS ASP ASN ARG GLY ILE CYS SEQRES 43 A 555 GLY THR SER HIS HIS HIS HIS HIS HIS HET NAG B 1 28 HET NAG B 2 28 HET NAG A 603 28 HET CA A 604 1 HET CA A 605 1 HET CA A 606 1 HET CA A 607 1 HET CA A 608 1 HET CA A 609 1 HET CA A 610 1 HET CA A 611 1 HET MAN A 612 22 HET MAN A 613 22 HET MAN A 614 22 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 CA 8(CA 2+) FORMUL 12 MAN 3(C6 H12 O6) FORMUL 15 HOH *74(H2 O) HELIX 1 AA1 TYR A 28 ALA A 30 5 3 HELIX 2 AA2 LYS A 193 GLU A 196 5 4 HELIX 3 AA3 VAL A 310 TYR A 314 5 5 HELIX 4 AA4 ASN A 381 GLY A 384 5 4 SHEET 1 AA1 2 TRP A 2 VAL A 3 0 SHEET 2 AA1 2 THR A 25 SER A 26 -1 O THR A 25 N VAL A 3 SHEET 1 AA2 4 CYS A 9 ARG A 10 0 SHEET 2 AA2 4 LEU A 92 LEU A 99 1 O LEU A 99 N CYS A 9 SHEET 3 AA2 4 SER A 73 LEU A 81 -1 N ILE A 76 O LEU A 94 SHEET 4 AA2 4 THR A 35 SER A 39 -1 N THR A 35 O LEU A 81 SHEET 1 AA3 3 ALA A 22 LYS A 23 0 SHEET 2 AA3 3 ASP A 59 ILE A 62 -1 O ILE A 60 N ALA A 22 SHEET 3 AA3 3 PHE A 51 VAL A 53 -1 N VAL A 52 O ASN A 61 SHEET 1 AA4 2 VAL A 107 PHE A 108 0 SHEET 2 AA4 2 ALA A 132 THR A 133 -1 O THR A 133 N VAL A 107 SHEET 1 AA5 4 ILE A 112 ILE A 117 0 SHEET 2 AA5 4 SER A 199 VAL A 208 1 O GLU A 203 N PHE A 113 SHEET 3 AA5 4 SER A 183 ALA A 191 -1 N TYR A 184 O ILE A 206 SHEET 4 AA5 4 ILE A 149 GLN A 152 -1 N VAL A 150 O VAL A 187 SHEET 1 AA6 3 LEU A 126 ILE A 129 0 SHEET 2 AA6 3 GLU A 168 THR A 171 -1 O VAL A 169 N VAL A 127 SHEET 3 AA6 3 PHE A 160 LEU A 162 -1 N LEU A 161 O ARG A 170 SHEET 1 AA7 2 MET A 217 PHE A 218 0 SHEET 2 AA7 2 VAL A 241 THR A 242 -1 O THR A 242 N MET A 217 SHEET 1 AA8 4 TYR A 223 GLU A 228 0 SHEET 2 AA8 4 THR A 319 ILE A 326 1 O GLN A 324 N ILE A 227 SHEET 3 AA8 4 SER A 293 ASN A 302 -1 N LEU A 296 O VAL A 321 SHEET 4 AA8 4 ALA A 254 SER A 260 -1 N THR A 259 O SER A 297 SHEET 1 AA9 3 SER A 233 PHE A 239 0 SHEET 2 AA9 3 GLY A 278 VAL A 282 -1 O GLY A 278 N PHE A 239 SHEET 3 AA9 3 PHE A 267 THR A 271 -1 N GLN A 270 O ILE A 279 SHEET 1 AB1 2 ILE A 332 ALA A 333 0 SHEET 2 AB1 2 ILE A 363 ASP A 364 -1 O ILE A 363 N ALA A 333 SHEET 1 AB2 4 SER A 338 THR A 342 0 SHEET 2 AB2 4 SER A 428 ARG A 435 1 O TYR A 433 N PHE A 341 SHEET 3 AB2 4 THR A 412 ASP A 421 -1 N ALA A 415 O VAL A 432 SHEET 4 AB2 4 VAL A 374 GLY A 379 -1 N VAL A 377 O LEU A 418 SHEET 1 AB3 3 GLY A 358 THR A 359 0 SHEET 2 AB3 3 GLU A 394 PHE A 397 -1 O ILE A 395 N GLY A 358 SHEET 3 AB3 3 LEU A 386 ILE A 388 -1 N MET A 387 O LYS A 396 LINK ND2 ASN A 61 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 131 C1 NAG A 603 1555 1555 1.43 LINK OG1 THR A 427 C1 MAN A 614 1555 1555 1.44 LINK OG1 THR A 429 C1 MAN A 612 1555 1555 1.44 LINK OG1 THR A 431 C1 MAN A 613 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK OE2 GLU A 11 CA CA A 604 1555 1555 2.56 LINK OE1 GLU A 11 CA CA A 606 1555 1555 2.38 LINK OD1 ASP A 67 CA CA A 606 1555 1555 2.42 LINK OD2 ASP A 67 CA CA A 606 1555 1555 3.16 LINK OE1 GLU A 69 CA CA A 604 1555 1555 2.48 LINK OE2 GLU A 69 CA CA A 604 1555 1555 2.66 LINK OE1 GLU A 69 CA CA A 606 1555 1555 2.41 LINK OD1 ASP A 100 CA CA A 604 1555 1555 2.40 LINK O ILE A 101 CA CA A 604 1555 1555 2.51 LINK OD1 ASN A 102 CA CA A 607 1555 1555 2.38 LINK OD1 ASP A 103 CA CA A 604 1555 1555 2.59 LINK OD2 ASP A 103 CA CA A 606 1555 1555 2.41 LINK O ASN A 104 CA CA A 607 1555 1555 2.40 LINK OE2 GLU A 119 CA CA A 608 1555 1555 2.34 LINK OE1 GLU A 119 CA CA A 609 1555 1555 2.79 LINK OD1 ASP A 134 CA CA A 607 1555 1555 2.67 LINK OD2 ASP A 134 CA CA A 607 1555 1555 2.48 LINK OD1 ASP A 136 CA CA A 604 1555 1555 2.47 LINK OD2 ASP A 136 CA CA A 607 1555 1555 2.33 LINK O ASN A 142 CA CA A 607 1555 1555 2.48 LINK OD1 ASP A 177 CA CA A 608 1555 1555 2.36 LINK OE2 GLU A 179 CA CA A 608 1555 1555 2.83 LINK OE1 GLU A 179 CA CA A 609 1555 1555 2.72 LINK OE2 GLU A 179 CA CA A 609 1555 1555 2.59 LINK OD2 ASP A 192 CA CA A 607 1555 1555 2.52 LINK OD1 ASP A 210 CA CA A 609 1555 1555 2.68 LINK O VAL A 211 CA CA A 609 1555 1555 2.52 LINK OD1 ASN A 212 CA CA A 605 1555 1555 2.35 LINK OD2 ASP A 213 CA CA A 608 1555 1555 2.32 LINK OD1 ASP A 213 CA CA A 609 1555 1555 2.43 LINK O ASN A 214 CA CA A 605 1555 1555 2.43 LINK OE1 GLU A 229 CA CA A 610 1555 1555 2.49 LINK OE2 GLU A 229 CA CA A 611 1555 1555 2.52 LINK OD1 ASP A 243 CA CA A 605 1555 1555 2.68 LINK OD2 ASP A 243 CA CA A 605 1555 1555 2.37 LINK OD2 ASP A 245 CA CA A 605 1555 1555 2.35 LINK OD1 ASP A 245 CA CA A 609 1555 1555 2.37 LINK O ASN A 251 CA CA A 605 1555 1555 2.53 LINK OD1 ASP A 287 CA CA A 611 1555 1555 2.39 LINK OD2 ASP A 287 CA CA A 611 1555 1555 2.50 LINK OE2 GLU A 289 CA CA A 610 1555 1555 2.29 LINK OE1 GLU A 289 CA CA A 611 1555 1555 2.58 LINK OD1 ASN A 302 CA CA A 605 1555 1555 2.42 LINK OD1 ASN A 327 CA CA A 610 1555 1555 2.41 LINK O VAL A 328 CA CA A 610 1555 1555 2.41 LINK OE1 GLU A 330 CA CA A 610 1555 1555 2.39 LINK OE1 GLU A 330 CA CA A 611 1555 1555 2.33 LINK OE2 GLU A 330 CA CA A 611 1555 1555 2.47 LINK CA CA A 606 O HOH A 746 1555 1555 2.85 CISPEP 1 ASN A 19 PRO A 20 0 -4.85 CISPEP 2 PRO A 46 PRO A 47 0 -2.55 CRYST1 81.909 44.862 106.699 90.00 102.92 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012209 0.000000 0.002800 0.00000 SCALE2 0.000000 0.022291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009615 0.00000