PDB Short entry for 5EZD HEADER HYDROLASE 26-NOV-15 5EZD TITLE CRYSTAL STRUCTURE OF A HEPATOCYTE GROWTH FACTOR ACTIVATOR INHIBITOR-1 TITLE 2 (HAI-1) FRAGMENT COVERING THE PKD-LIKE 'INTERNAL' DOMAIN AND KUNITZ TITLE 3 DOMAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KUNITZ-TYPE PROTEASE INHIBITOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 168-303; COMPND 5 SYNONYM: HEPATOCYTE GROWTH FACTOR ACTIVATOR INHIBITOR TYPE 1,HAI-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPINT1, HAI1, UNQ223/PRO256; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS CBS 7435; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 981350 KEYWDS TRANSMEMBRANE, MULTIDOMAIN, SERINE PROTEASE INHIBITOR, TERTIARY KEYWDS 2 STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.HONG,P.A.ANDREASEN,J.P.MORTH,J.K.JENSEN REVDAT 4 10-JAN-24 5EZD 1 LINK REVDAT 3 13-JUL-16 5EZD 1 JRNL REVDAT 2 01-JUN-16 5EZD 1 JRNL REVDAT 1 18-MAY-16 5EZD 0 JRNL AUTH Z.HONG,L.DE MEULEMEESTER,A.JACOBI,J.S.PEDERSEN,J.P.MORTH, JRNL AUTH 2 P.A.ANDREASEN,J.K.JENSEN JRNL TITL CRYSTAL STRUCTURE OF A TWO-DOMAIN FRAGMENT OF HEPATOCYTE JRNL TITL 2 GROWTH FACTOR ACTIVATOR INHIBITOR-1: FUNCTIONAL INTERACTIONS JRNL TITL 3 BETWEEN THE KUNITZ-TYPE INHIBITOR DOMAIN-1 AND THE JRNL TITL 4 NEIGHBORING POLYCYSTIC KIDNEY DISEASE-LIKE DOMAIN. JRNL REF J.BIOL.CHEM. V. 291 14340 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27189939 JRNL DOI 10.1074/JBC.M115.707240 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 36191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1449 - 4.9255 0.97 2643 106 0.2214 0.2223 REMARK 3 2 4.9255 - 3.9149 0.96 2552 148 0.1893 0.2420 REMARK 3 3 3.9149 - 3.4216 0.96 2571 139 0.2010 0.2827 REMARK 3 4 3.4216 - 3.1095 0.97 2612 175 0.2301 0.2160 REMARK 3 5 3.1095 - 2.8870 0.99 2605 167 0.2335 0.2467 REMARK 3 6 2.8870 - 2.7170 0.99 2682 124 0.2356 0.2807 REMARK 3 7 2.7170 - 2.5811 0.99 2670 145 0.2351 0.2450 REMARK 3 8 2.5811 - 2.4689 0.99 2680 136 0.2373 0.3715 REMARK 3 9 2.4689 - 2.3739 1.00 2690 107 0.2492 0.3793 REMARK 3 10 2.3739 - 2.2920 0.99 2704 140 0.2854 0.3684 REMARK 3 11 2.2920 - 2.2204 0.99 2645 133 0.2882 0.3583 REMARK 3 12 2.2204 - 2.1570 0.99 2678 167 0.2806 0.2859 REMARK 3 13 2.1570 - 2.1002 0.98 2667 105 0.3053 0.3086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1980 REMARK 3 ANGLE : 1.144 2660 REMARK 3 CHIRALITY : 0.039 296 REMARK 3 PLANARITY : 0.006 338 REMARK 3 DIHEDRAL : 13.732 736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4983 -0.2038 17.7941 REMARK 3 T TENSOR REMARK 3 T11: 0.5309 T22: 0.9307 REMARK 3 T33: 0.7412 T12: 0.0571 REMARK 3 T13: -0.1343 T23: -0.2072 REMARK 3 L TENSOR REMARK 3 L11: 9.4561 L22: 4.0277 REMARK 3 L33: 5.7238 L12: 3.9924 REMARK 3 L13: 7.1039 L23: 2.0521 REMARK 3 S TENSOR REMARK 3 S11: 0.2064 S12: -1.0236 S13: -0.3227 REMARK 3 S21: 0.1991 S22: 0.4386 S23: -0.5743 REMARK 3 S31: 0.0332 S32: 1.1139 S33: -0.5265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9212 -2.9977 15.8685 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.7883 REMARK 3 T33: 1.0226 T12: -0.1080 REMARK 3 T13: 0.2249 T23: -0.4357 REMARK 3 L TENSOR REMARK 3 L11: 1.8632 L22: 0.4433 REMARK 3 L33: 0.5215 L12: 0.3311 REMARK 3 L13: 0.0603 L23: -0.2078 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.5871 S13: 0.1256 REMARK 3 S21: -0.0814 S22: -0.0445 S23: 0.1461 REMARK 3 S31: 0.0149 S32: -0.1714 S33: 0.5716 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4802 9.6734 20.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.7069 T22: 1.1018 REMARK 3 T33: 1.5064 T12: 0.2400 REMARK 3 T13: -0.2054 T23: -0.3823 REMARK 3 L TENSOR REMARK 3 L11: 6.9326 L22: 5.3225 REMARK 3 L33: 2.3487 L12: -2.3663 REMARK 3 L13: 2.7255 L23: -0.7571 REMARK 3 S TENSOR REMARK 3 S11: -0.9958 S12: 0.1017 S13: 0.1049 REMARK 3 S21: -0.7393 S22: -0.7659 S23: 0.5827 REMARK 3 S31: -1.0366 S32: -1.6937 S33: 1.0878 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4150 -2.9400 24.7808 REMARK 3 T TENSOR REMARK 3 T11: 0.9084 T22: 1.3219 REMARK 3 T33: 1.3628 T12: -0.2456 REMARK 3 T13: 0.1513 T23: -0.3474 REMARK 3 L TENSOR REMARK 3 L11: 2.3435 L22: 2.8547 REMARK 3 L33: 9.7174 L12: 1.7418 REMARK 3 L13: -2.7449 L23: 0.9162 REMARK 3 S TENSOR REMARK 3 S11: 0.2079 S12: -1.9941 S13: 0.3139 REMARK 3 S21: 2.2188 S22: -0.8621 S23: 2.7715 REMARK 3 S31: 0.1720 S32: -0.7941 S33: 0.9237 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4331 2.5318 14.1240 REMARK 3 T TENSOR REMARK 3 T11: 0.6341 T22: 0.5973 REMARK 3 T33: 0.8136 T12: 0.0800 REMARK 3 T13: -0.1178 T23: -0.0905 REMARK 3 L TENSOR REMARK 3 L11: 7.5636 L22: 5.2137 REMARK 3 L33: 4.4734 L12: -0.0190 REMARK 3 L13: -0.3349 L23: 1.9234 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: -0.0674 S13: 1.1995 REMARK 3 S21: -0.0577 S22: -0.5652 S23: 1.0073 REMARK 3 S31: -0.8052 S32: -1.6511 S33: 0.3989 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6029 -7.5121 1.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.7135 T22: 0.8410 REMARK 3 T33: 0.4982 T12: -0.0653 REMARK 3 T13: 0.1208 T23: -0.0719 REMARK 3 L TENSOR REMARK 3 L11: 4.1023 L22: 8.8405 REMARK 3 L33: 9.2235 L12: 0.8720 REMARK 3 L13: 5.5078 L23: 2.3373 REMARK 3 S TENSOR REMARK 3 S11: -0.2928 S12: 0.9827 S13: -0.4442 REMARK 3 S21: -0.8463 S22: 0.4533 S23: -1.4543 REMARK 3 S31: -0.1401 S32: 1.3674 S33: -0.2846 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7417 -12.6039 4.1674 REMARK 3 T TENSOR REMARK 3 T11: 0.8137 T22: 0.5061 REMARK 3 T33: 0.4972 T12: -0.0039 REMARK 3 T13: -0.0476 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.8900 L22: 7.5036 REMARK 3 L33: 6.7524 L12: -2.3261 REMARK 3 L13: -0.8393 L23: -0.3368 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.4463 S13: -0.9240 REMARK 3 S21: -0.7614 S22: 0.1729 S23: 1.0139 REMARK 3 S31: 1.3828 S32: -0.2686 S33: -0.2740 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1302 -7.1961 7.6226 REMARK 3 T TENSOR REMARK 3 T11: 0.6113 T22: 0.5815 REMARK 3 T33: 0.5821 T12: -0.1019 REMARK 3 T13: -0.0819 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 6.5025 L22: 8.2288 REMARK 3 L33: 8.1703 L12: 1.2910 REMARK 3 L13: -5.6123 L23: 0.9862 REMARK 3 S TENSOR REMARK 3 S11: 0.2299 S12: -0.0415 S13: 0.4765 REMARK 3 S21: -0.0969 S22: -0.0962 S23: 1.0144 REMARK 3 S31: 0.0222 S32: -0.0976 S33: -0.2026 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9182 1.0120 19.0256 REMARK 3 T TENSOR REMARK 3 T11: 0.5269 T22: 0.6553 REMARK 3 T33: 0.9967 T12: -0.0866 REMARK 3 T13: 0.0333 T23: -0.1448 REMARK 3 L TENSOR REMARK 3 L11: 3.3569 L22: 4.5601 REMARK 3 L33: 5.6352 L12: 3.9078 REMARK 3 L13: -1.0938 L23: -1.0618 REMARK 3 S TENSOR REMARK 3 S11: 0.3573 S12: -0.4112 S13: -0.3376 REMARK 3 S21: -0.0535 S22: -0.8359 S23: 1.7192 REMARK 3 S31: 0.3312 S32: -0.3093 S33: 0.2971 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3353 2.9293 21.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.9618 REMARK 3 T33: 0.7966 T12: 0.2139 REMARK 3 T13: -0.0311 T23: -0.4607 REMARK 3 L TENSOR REMARK 3 L11: 1.4355 L22: 0.1807 REMARK 3 L33: 0.9438 L12: 0.4510 REMARK 3 L13: -0.3767 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: -0.0384 S13: 0.5245 REMARK 3 S21: 0.0145 S22: 0.0115 S23: -0.1303 REMARK 3 S31: -0.1821 S32: 0.1215 S33: -0.4473 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9003 -2.1257 9.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.7164 T22: 1.6314 REMARK 3 T33: 1.1394 T12: -0.3321 REMARK 3 T13: 0.2279 T23: -0.4370 REMARK 3 L TENSOR REMARK 3 L11: 7.7777 L22: 2.8632 REMARK 3 L33: 3.9735 L12: -0.9084 REMARK 3 L13: -2.1013 L23: -2.8191 REMARK 3 S TENSOR REMARK 3 S11: -0.6730 S12: 0.3803 S13: 0.5318 REMARK 3 S21: -0.8204 S22: 1.4550 S23: -1.3112 REMARK 3 S31: -0.5883 S32: 0.5597 S33: -0.6888 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8251 -5.9845 21.7608 REMARK 3 T TENSOR REMARK 3 T11: 0.9649 T22: 1.3957 REMARK 3 T33: 1.3245 T12: 0.1247 REMARK 3 T13: -0.2279 T23: -0.2777 REMARK 3 L TENSOR REMARK 3 L11: 2.3645 L22: 3.6126 REMARK 3 L33: 1.9415 L12: -2.1382 REMARK 3 L13: -0.0319 L23: 0.7515 REMARK 3 S TENSOR REMARK 3 S11: 0.1752 S12: 0.4488 S13: -2.4709 REMARK 3 S21: -0.0177 S22: 0.3330 S23: -0.5856 REMARK 3 S31: 1.9871 S32: 3.1823 S33: -0.6704 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4894 -1.4579 15.6667 REMARK 3 T TENSOR REMARK 3 T11: 0.7244 T22: 1.2537 REMARK 3 T33: 0.8439 T12: -0.0246 REMARK 3 T13: 0.0588 T23: -0.3309 REMARK 3 L TENSOR REMARK 3 L11: 5.1967 L22: 6.7819 REMARK 3 L33: 7.2194 L12: -1.0407 REMARK 3 L13: 2.0324 L23: 3.9554 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: 1.1632 S13: -0.5080 REMARK 3 S21: -0.2771 S22: 1.0389 S23: -1.5452 REMARK 3 S31: 0.3681 S32: 1.2525 S33: -0.8218 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0391 11.2249 16.9818 REMARK 3 T TENSOR REMARK 3 T11: 0.4553 T22: 0.4680 REMARK 3 T33: 0.4286 T12: -0.1582 REMARK 3 T13: 0.1110 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 4.8064 L22: 1.3581 REMARK 3 L33: 5.1918 L12: -2.5475 REMARK 3 L13: 0.5973 L23: -0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.6451 S13: 1.0309 REMARK 3 S21: -0.4225 S22: 0.0093 S23: -0.9108 REMARK 3 S31: -1.0792 S32: 0.6321 S33: -0.0907 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8130 17.4692 26.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.6893 T22: 0.4363 REMARK 3 T33: 0.8635 T12: 0.1078 REMARK 3 T13: -0.0532 T23: -0.1151 REMARK 3 L TENSOR REMARK 3 L11: 6.8824 L22: 6.8507 REMARK 3 L33: 7.9528 L12: 4.2628 REMARK 3 L13: -0.1042 L23: 1.8900 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.4086 S13: 0.9001 REMARK 3 S21: 0.2526 S22: -0.1976 S23: 0.8519 REMARK 3 S31: -0.7840 S32: -1.2027 S33: 0.2146 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 263 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6676 14.6174 31.4487 REMARK 3 T TENSOR REMARK 3 T11: 0.7919 T22: 0.3900 REMARK 3 T33: 0.5332 T12: -0.0526 REMARK 3 T13: -0.0071 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 7.1776 L22: 6.2030 REMARK 3 L33: 8.2510 L12: -0.7125 REMARK 3 L13: -0.8678 L23: 0.6100 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: -0.7478 S13: 0.7622 REMARK 3 S21: 1.3743 S22: -0.0620 S23: -0.2597 REMARK 3 S31: -0.7368 S32: 0.9565 S33: 0.1591 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 281 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5418 11.1703 26.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.6146 T22: 0.5303 REMARK 3 T33: 0.5766 T12: -0.0935 REMARK 3 T13: -0.1114 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 6.8853 L22: 5.5139 REMARK 3 L33: 7.5785 L12: -5.3920 REMARK 3 L13: -0.0482 L23: 1.2677 REMARK 3 S TENSOR REMARK 3 S11: 0.1988 S12: 0.6712 S13: -0.0294 REMARK 3 S21: 0.0169 S22: -0.1895 S23: -0.1200 REMARK 3 S31: -0.1659 S32: 1.0685 S33: 0.0174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 166:181 OR RESSEQ REMARK 3 189:202 OR RESSEQ 207:224 OR RESSEQ 233: REMARK 3 304 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 166:181 OR RESSEQ REMARK 3 189:202 OR RESSEQ 207:224 OR RESSEQ 233: REMARK 3 304 ) REMARK 3 ATOM PAIRS NUMBER : 969 REMARK 3 RMSD : 0.012 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 53.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ISL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% W/V PEG 2000 MME, 0.1 M SODIUM REMARK 280 ACETATE PH 5.5, 0.2 M POTASSIUM BROMIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 GLU A 185 REMARK 465 ASN A 186 REMARK 465 THR A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 203 REMARK 465 ASP A 204 REMARK 465 PRO A 205 REMARK 465 ASN A 206 REMARK 465 THR A 225 REMARK 465 SER A 226 REMARK 465 SER A 227 REMARK 465 ASP A 228 REMARK 465 HIS A 229 REMARK 465 PRO A 230 REMARK 465 GLU A 231 REMARK 465 ASP A 232 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 LYS B 182 REMARK 465 ASP B 183 REMARK 465 VAL B 184 REMARK 465 GLU B 185 REMARK 465 ASN B 186 REMARK 465 THR B 187 REMARK 465 ASP B 188 REMARK 465 LYS B 203 REMARK 465 ASP B 204 REMARK 465 PRO B 205 REMARK 465 ASN B 206 REMARK 465 THR B 225 REMARK 465 SER B 226 REMARK 465 SER B 227 REMARK 465 ASP B 228 REMARK 465 HIS B 229 REMARK 465 PRO B 230 REMARK 465 GLU B 231 REMARK 465 ASP B 232 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 250 -31.64 -135.17 REMARK 500 ASN A 289 104.49 -168.27 REMARK 500 CYS B 250 -31.03 -134.57 REMARK 500 ASN B 289 104.13 -168.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 294 OE1 REMARK 620 2 HOH A 512 O 70.0 REMARK 620 3 HOH A 524 O 170.5 115.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 294 OE1 REMARK 620 2 HOH B 508 O 71.1 REMARK 620 3 HOH B 525 O 118.8 144.1 REMARK 620 4 HOH B 526 O 168.6 119.8 55.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 403 DBREF 5EZD A 168 303 UNP O43278 SPIT1_HUMAN 168 303 DBREF 5EZD B 168 303 UNP O43278 SPIT1_HUMAN 168 303 SEQADV 5EZD LYS A 166 UNP O43278 EXPRESSION TAG SEQADV 5EZD ARG A 167 UNP O43278 EXPRESSION TAG SEQADV 5EZD ASP A 304 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 305 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 306 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 307 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 308 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 309 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS A 310 UNP O43278 EXPRESSION TAG SEQADV 5EZD LYS B 166 UNP O43278 EXPRESSION TAG SEQADV 5EZD ARG B 167 UNP O43278 EXPRESSION TAG SEQADV 5EZD ASP B 304 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 305 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 306 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 307 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 308 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 309 UNP O43278 EXPRESSION TAG SEQADV 5EZD HIS B 310 UNP O43278 EXPRESSION TAG SEQRES 1 A 145 LYS ARG GLY ILE ASP LEU LYS VAL GLN PRO GLN GLU PRO SEQRES 2 A 145 LEU VAL LEU LYS ASP VAL GLU ASN THR ASP TRP ARG LEU SEQRES 3 A 145 LEU ARG GLY ASP THR ASP VAL ARG VAL GLU ARG LYS ASP SEQRES 4 A 145 PRO ASN GLN VAL GLU LEU TRP GLY LEU LYS GLU GLY THR SEQRES 5 A 145 TYR LEU PHE GLN LEU THR VAL THR SER SER ASP HIS PRO SEQRES 6 A 145 GLU ASP THR ALA ASN VAL THR VAL THR VAL LEU SER THR SEQRES 7 A 145 LYS GLN THR GLU ASP TYR CYS LEU ALA SER ASN LYS VAL SEQRES 8 A 145 GLY ARG CYS ARG GLY SER PHE PRO ARG TRP TYR TYR ASP SEQRES 9 A 145 PRO THR GLU GLN ILE CYS LYS SER PHE VAL TYR GLY GLY SEQRES 10 A 145 CYS LEU GLY ASN LYS ASN ASN TYR LEU ARG GLU GLU GLU SEQRES 11 A 145 CYS ILE LEU ALA CYS ARG GLY VAL ASP HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 LYS ARG GLY ILE ASP LEU LYS VAL GLN PRO GLN GLU PRO SEQRES 2 B 145 LEU VAL LEU LYS ASP VAL GLU ASN THR ASP TRP ARG LEU SEQRES 3 B 145 LEU ARG GLY ASP THR ASP VAL ARG VAL GLU ARG LYS ASP SEQRES 4 B 145 PRO ASN GLN VAL GLU LEU TRP GLY LEU LYS GLU GLY THR SEQRES 5 B 145 TYR LEU PHE GLN LEU THR VAL THR SER SER ASP HIS PRO SEQRES 6 B 145 GLU ASP THR ALA ASN VAL THR VAL THR VAL LEU SER THR SEQRES 7 B 145 LYS GLN THR GLU ASP TYR CYS LEU ALA SER ASN LYS VAL SEQRES 8 B 145 GLY ARG CYS ARG GLY SER PHE PRO ARG TRP TYR TYR ASP SEQRES 9 B 145 PRO THR GLU GLN ILE CYS LYS SER PHE VAL TYR GLY GLY SEQRES 10 B 145 CYS LEU GLY ASN LYS ASN ASN TYR LEU ARG GLU GLU GLU SEQRES 11 B 145 CYS ILE LEU ALA CYS ARG GLY VAL ASP HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS HET K A 401 1 HET ACT B 401 4 HET ACT B 402 4 HET K B 403 1 HETNAM K POTASSIUM ION HETNAM ACT ACETATE ION FORMUL 3 K 2(K 1+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *63(H2 O) HELIX 1 AA1 SER A 242 LEU A 251 1 10 HELIX 2 AA2 ARG A 292 ARG A 301 1 10 HELIX 3 AA3 SER B 242 LEU B 251 1 10 HELIX 4 AA4 ARG B 292 ARG B 301 1 10 SHEET 1 AA1 4 ILE A 169 VAL A 173 0 SHEET 2 AA1 4 ALA A 234 VAL A 240 1 O THR A 239 N LEU A 171 SHEET 3 AA1 4 GLY A 216 LEU A 222 -1 N PHE A 220 O VAL A 236 SHEET 4 AA1 4 ARG A 190 GLY A 194 -1 N LEU A 192 O LEU A 219 SHEET 1 AA2 3 PRO A 178 VAL A 180 0 SHEET 2 AA2 3 GLU A 209 TRP A 211 -1 O LEU A 210 N LEU A 179 SHEET 3 AA2 3 ARG A 199 GLU A 201 -1 N ARG A 199 O TRP A 211 SHEET 1 AA3 2 PHE A 263 ASP A 269 0 SHEET 2 AA3 2 ILE A 274 TYR A 280 -1 O TYR A 280 N PHE A 263 SHEET 1 AA4 4 ILE B 169 VAL B 173 0 SHEET 2 AA4 4 ALA B 234 VAL B 240 1 O THR B 237 N ILE B 169 SHEET 3 AA4 4 GLY B 216 LEU B 222 -1 N PHE B 220 O VAL B 236 SHEET 4 AA4 4 ARG B 190 GLY B 194 -1 N LEU B 192 O LEU B 219 SHEET 1 AA5 3 PRO B 178 VAL B 180 0 SHEET 2 AA5 3 GLU B 209 TRP B 211 -1 O LEU B 210 N LEU B 179 SHEET 3 AA5 3 ARG B 199 GLU B 201 -1 N ARG B 199 O TRP B 211 SHEET 1 AA6 2 PHE B 263 ASP B 269 0 SHEET 2 AA6 2 ILE B 274 TYR B 280 -1 O TYR B 280 N PHE B 263 SSBOND 1 CYS A 250 CYS A 300 1555 1555 2.04 SSBOND 2 CYS A 259 CYS A 283 1555 1555 2.05 SSBOND 3 CYS A 275 CYS A 296 1555 1555 2.07 SSBOND 4 CYS B 250 CYS B 300 1555 1555 2.04 SSBOND 5 CYS B 259 CYS B 283 1555 1555 2.04 SSBOND 6 CYS B 275 CYS B 296 1555 1555 2.06 LINK OE1 GLU A 294 K K A 401 1555 1555 3.09 LINK K K A 401 O HOH A 512 1555 1555 3.13 LINK K K A 401 O HOH A 524 1555 1555 2.83 LINK OE1 GLU B 294 K K B 403 1555 1555 3.11 LINK K K B 403 O HOH B 508 1555 1555 3.14 LINK K K B 403 O HOH B 525 1555 1555 3.10 LINK K K B 403 O HOH B 526 1555 1555 2.88 SITE 1 AC1 3 GLU A 293 GLU A 294 HOH A 524 SITE 1 AC2 4 VAL A 256 GLY A 261 SER B 277 HOH B 510 SITE 1 AC3 4 SER A 277 VAL B 256 GLY B 261 HOH B 512 SITE 1 AC4 3 GLU B 293 GLU B 294 HOH B 526 CRYST1 57.650 75.140 75.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013287 0.00000