PDB Short entry for 5F2H HEADER UNKNOWN FUNCTION 01-DEC-15 5F2H TITLE 2.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN TITLE 2 FROM BACILLUS CEREUS ATCC 10987 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 STRAIN: ATCC 10987 / NRS 248; SOURCE 5 GENE: BCE_2095; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS BACILLUS CEREUS ATCC 10987, PSI-BIOLOGY, HUMAN MICROBIOME, KEYWDS 2 METAGENOMICS DEGRADOME REPRESENTATIVES, STRUCTURAL GENOMICS, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,E.V.FILIPPOVA,Z.WAWRZAK,G.MINASOV,O.KIRYUKHINA, AUTHOR 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 1 16-DEC-15 5F2H 0 JRNL AUTH A.S.HALAVATY,E.V.FILIPPOVA,Z.WAWRZAK,G.MINASOV,O.KIRYUKHINA, JRNL AUTH 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL 2.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF JRNL TITL 2 UNCHARACTERIZED PROTEIN FROM BACILLUS CEREUS ATCC 10987 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.46000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -13.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.463 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5163 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4825 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6963 ; 1.511 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11166 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 1.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;19.412 ;25.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ; 7.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.129 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5805 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1161 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 310 B 5 310 17533 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8328 5.2199 95.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.2973 REMARK 3 T33: 0.5618 T12: -0.0347 REMARK 3 T13: 0.0805 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.6529 L22: 1.2925 REMARK 3 L33: 5.4879 L12: -0.7295 REMARK 3 L13: 0.8208 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.1773 S12: -0.3361 S13: -0.0304 REMARK 3 S21: 0.2344 S22: 0.2543 S23: 0.1514 REMARK 3 S31: 0.3966 S32: -0.4609 S33: -0.0771 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6689 11.7385 34.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.1621 REMARK 3 T33: 0.4898 T12: 0.0741 REMARK 3 T13: 0.0742 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.3216 L22: 4.3567 REMARK 3 L33: 8.3153 L12: 0.2752 REMARK 3 L13: -1.7903 L23: 1.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: -0.1596 S13: 0.2992 REMARK 3 S21: 0.4022 S22: 0.3809 S23: 0.1343 REMARK 3 S31: -0.3250 S32: -0.0984 S33: -0.5846 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3103 2.3222 11.4338 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.2346 REMARK 3 T33: 0.4669 T12: 0.0044 REMARK 3 T13: 0.0496 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 1.0472 L22: 1.2237 REMARK 3 L33: 6.9520 L12: 0.4185 REMARK 3 L13: -0.5762 L23: 1.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: 0.2441 S13: 0.1475 REMARK 3 S21: -0.1193 S22: 0.4699 S23: -0.2639 REMARK 3 S31: 0.4490 S32: 0.8527 S33: -0.3897 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 128 B 312 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2681 15.0727 70.4624 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.3348 REMARK 3 T33: 0.5317 T12: -0.0866 REMARK 3 T13: 0.0391 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.6250 L22: 3.8717 REMARK 3 L33: 5.1938 L12: -0.1761 REMARK 3 L13: -0.7564 L23: -0.3200 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.3759 S13: 0.2362 REMARK 3 S21: -0.2658 S22: 0.0756 S23: -0.2829 REMARK 3 S31: -0.2150 S32: 0.1709 S33: -0.0690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (SEMET): 8.9 MG/ML IN 10 MM REMARK 280 TRIS-HCL PH 8.3 0.25 M NACL, 5 MM BME CRYSTALLIZATION: THE REMARK 280 CLASSICS II D7(43): 0.1 M BIS-TRIS PH 6.5, 25% (W/V) PEG3350 REMARK 280 CRYO: CRYSTALLIZATION CONDITION SOAK, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.08800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 LYS A 311 REMARK 465 SER A 312 REMARK 465 ASN A 313 REMARK 465 LYS A 314 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 ASN B 313 REMARK 465 LYS B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 241 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 GLU B 309 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 -167.56 -108.85 REMARK 500 ASN A 40 100.11 -19.45 REMARK 500 GLU A 127 87.79 70.90 REMARK 500 GLU A 138 -159.75 -122.56 REMARK 500 ASN A 139 -167.89 -172.43 REMARK 500 SER A 149 7.45 -66.70 REMARK 500 ASP A 169 16.55 59.84 REMARK 500 HIS A 194 -22.68 -150.93 REMARK 500 SER A 205 -131.74 51.52 REMARK 500 ASN A 249 73.76 57.34 REMARK 500 GLU A 265 -74.60 -60.87 REMARK 500 ASN A 288 -13.10 64.56 REMARK 500 LYS A 290 -146.51 -96.48 REMARK 500 ASP A 296 40.06 -109.63 REMARK 500 LYS B 21 -167.01 -108.67 REMARK 500 LYS B 125 89.86 64.32 REMARK 500 LYS B 126 84.02 -67.88 REMARK 500 GLU B 138 -162.05 -122.39 REMARK 500 ASN B 139 -170.96 -170.10 REMARK 500 SER B 149 6.59 -67.14 REMARK 500 HIS B 194 -73.00 -157.23 REMARK 500 ARG B 195 70.23 73.31 REMARK 500 GLU B 197 -91.23 -87.72 REMARK 500 SER B 205 -131.52 51.59 REMARK 500 ASN B 249 75.55 51.53 REMARK 500 ASP B 258 5.82 -69.74 REMARK 500 ASN B 288 -13.50 64.69 REMARK 500 LYS B 290 -146.26 -96.83 REMARK 500 ASP B 296 40.28 -109.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC113072 RELATED DB: TARGETTRACK DBREF 5F2H A 1 314 UNP Q739P5 Q739P5_BACC1 1 314 DBREF 5F2H B 1 314 UNP Q739P5 Q739P5_BACC1 1 314 SEQADV 5F2H SER A -2 UNP Q739P5 EXPRESSION TAG SEQADV 5F2H ASN A -1 UNP Q739P5 EXPRESSION TAG SEQADV 5F2H ALA A 0 UNP Q739P5 EXPRESSION TAG SEQADV 5F2H SER B -2 UNP Q739P5 EXPRESSION TAG SEQADV 5F2H ASN B -1 UNP Q739P5 EXPRESSION TAG SEQADV 5F2H ALA B 0 UNP Q739P5 EXPRESSION TAG SEQRES 1 A 317 SER ASN ALA MSE LYS ASN SER MSE THR TYR ILE GLN LEU SEQRES 2 A 317 LEU ASN GLU THR LEU HIS CYS TYR ALA SER LYS GLY SER SEQRES 3 A 317 LEU GLU ALA TYR THR TYR ILE MSE GLU HIS ALA LYS GLY SEQRES 4 A 317 ILE VAL GLY ASN GLU ALA GLN ILE TYR ASN PHE LYS TYR SEQRES 5 A 317 ALA LEU ALA SER ALA ALA GLY LEU GLU GLU GLU ALA MSE SEQRES 6 A 317 HIS VAL MSE LYS GLU ALA ILE ILE GLU LYS GLY PHE TRP SEQRES 7 A 317 TYR GLY ASN GLU TYR LEU ILE SER ASP ASP ASP LEU LYS SEQRES 8 A 317 PRO LEU HIS LYS PHE GLU GLU PHE HIS GLN MSE VAL GLN SEQRES 9 A 317 LEU CYS LYS GLU ARG GLU GLU LEU ALA LYS LYS THR GLU SEQRES 10 A 317 ARG ALA ASP VAL LYS TYR ILE ASP SER LYS LYS LYS GLU SEQRES 11 A 317 LYS LEU PHE ILE ALA MSE HIS GLY ASP GLN GLU ASN ILE SEQRES 12 A 317 ALA ILE VAL GLU PRO TYR TRP LYS SER VAL LEU ASP GLN SEQRES 13 A 317 ASP TYR THR LEU ALA LEU PRO GLN SER SER GLN ILE GLN SEQRES 14 A 317 PHE SER ASP GLY PHE VAL TRP ASP ASP ILE GLN ARG GLY SEQRES 15 A 317 LYS GLU GLU LEU LYS GLU HIS TYR VAL LYS PHE ILE GLU SEQRES 16 A 317 ASN HIS ARG GLY GLU SER VAL ILE ILE GLY GLY PHE SER SEQRES 17 A 317 ALA GLY ALA ARG VAL ALA LEU TYR THR ILE LEU HIS LYS SEQRES 18 A 317 ASP ILE ASP VAL ASP GLY PHE ILE PHE MSE ALA PRO TRP SEQRES 19 A 317 LEU PRO GLU ILE ASP GLU TRP ASN GLU LEU LEU GLU VAL SEQRES 20 A 317 LEU GLN ASP LYS ASN ILE LYS GLY TYR VAL VAL CYS GLY SEQRES 21 A 317 ASP GLN ASP GLU ASP CYS PHE GLU CYS THR GLN GLN PHE SEQRES 22 A 317 VAL GLN VAL LEU LYS ASP LYS ASN ILE GLU HIS GLU PHE SEQRES 23 A 317 LYS VAL VAL PRO ASN LEU LYS HIS ASP TYR PRO GLU ASP SEQRES 24 A 317 PHE ASP GLU LEU LEU LYS GLU ALA ILE LYS TYR ILE GLU SEQRES 25 A 317 ASP LYS SER ASN LYS SEQRES 1 B 317 SER ASN ALA MSE LYS ASN SER MSE THR TYR ILE GLN LEU SEQRES 2 B 317 LEU ASN GLU THR LEU HIS CYS TYR ALA SER LYS GLY SER SEQRES 3 B 317 LEU GLU ALA TYR THR TYR ILE MSE GLU HIS ALA LYS GLY SEQRES 4 B 317 ILE VAL GLY ASN GLU ALA GLN ILE TYR ASN PHE LYS TYR SEQRES 5 B 317 ALA LEU ALA SER ALA ALA GLY LEU GLU GLU GLU ALA MSE SEQRES 6 B 317 HIS VAL MSE LYS GLU ALA ILE ILE GLU LYS GLY PHE TRP SEQRES 7 B 317 TYR GLY ASN GLU TYR LEU ILE SER ASP ASP ASP LEU LYS SEQRES 8 B 317 PRO LEU HIS LYS PHE GLU GLU PHE HIS GLN MSE VAL GLN SEQRES 9 B 317 LEU CYS LYS GLU ARG GLU GLU LEU ALA LYS LYS THR GLU SEQRES 10 B 317 ARG ALA ASP VAL LYS TYR ILE ASP SER LYS LYS LYS GLU SEQRES 11 B 317 LYS LEU PHE ILE ALA MSE HIS GLY ASP GLN GLU ASN ILE SEQRES 12 B 317 ALA ILE VAL GLU PRO TYR TRP LYS SER VAL LEU ASP GLN SEQRES 13 B 317 ASP TYR THR LEU ALA LEU PRO GLN SER SER GLN ILE GLN SEQRES 14 B 317 PHE SER ASP GLY PHE VAL TRP ASP ASP ILE GLN ARG GLY SEQRES 15 B 317 LYS GLU GLU LEU LYS GLU HIS TYR VAL LYS PHE ILE GLU SEQRES 16 B 317 ASN HIS ARG GLY GLU SER VAL ILE ILE GLY GLY PHE SER SEQRES 17 B 317 ALA GLY ALA ARG VAL ALA LEU TYR THR ILE LEU HIS LYS SEQRES 18 B 317 ASP ILE ASP VAL ASP GLY PHE ILE PHE MSE ALA PRO TRP SEQRES 19 B 317 LEU PRO GLU ILE ASP GLU TRP ASN GLU LEU LEU GLU VAL SEQRES 20 B 317 LEU GLN ASP LYS ASN ILE LYS GLY TYR VAL VAL CYS GLY SEQRES 21 B 317 ASP GLN ASP GLU ASP CYS PHE GLU CYS THR GLN GLN PHE SEQRES 22 B 317 VAL GLN VAL LEU LYS ASP LYS ASN ILE GLU HIS GLU PHE SEQRES 23 B 317 LYS VAL VAL PRO ASN LEU LYS HIS ASP TYR PRO GLU ASP SEQRES 24 B 317 PHE ASP GLU LEU LEU LYS GLU ALA ILE LYS TYR ILE GLU SEQRES 25 B 317 ASP LYS SER ASN LYS MODRES 5F2H MSE A 5 MET MODIFIED RESIDUE MODRES 5F2H MSE A 31 MET MODIFIED RESIDUE MODRES 5F2H MSE A 62 MET MODIFIED RESIDUE MODRES 5F2H MSE A 65 MET MODIFIED RESIDUE MODRES 5F2H MSE A 99 MET MODIFIED RESIDUE MODRES 5F2H MSE A 133 MET MODIFIED RESIDUE MODRES 5F2H MSE A 228 MET MODIFIED RESIDUE MODRES 5F2H MSE B 5 MET MODIFIED RESIDUE MODRES 5F2H MSE B 31 MET MODIFIED RESIDUE MODRES 5F2H MSE B 62 MET MODIFIED RESIDUE MODRES 5F2H MSE B 65 MET MODIFIED RESIDUE MODRES 5F2H MSE B 99 MET MODIFIED RESIDUE MODRES 5F2H MSE B 133 MET MODIFIED RESIDUE MODRES 5F2H MSE B 228 MET MODIFIED RESIDUE HET MSE A 5 8 HET MSE A 31 8 HET MSE A 62 8 HET MSE A 65 8 HET MSE A 99 8 HET MSE A 133 8 HET MSE A 228 8 HET MSE B 5 8 HET MSE B 31 8 HET MSE B 62 8 HET MSE B 65 8 HET MSE B 99 8 HET MSE B 133 8 HET MSE B 228 8 HET TRS A 401 8 HET TRS B 401 8 HET TRS B 402 8 HETNAM MSE SELENOMETHIONINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 TRS 3(C4 H12 N O3 1+) FORMUL 6 HOH *20(H2 O) HELIX 1 AA1 THR A 6 LYS A 21 1 16 HELIX 2 AA2 GLY A 22 LYS A 35 1 14 HELIX 3 AA3 ASN A 40 GLY A 56 1 17 HELIX 4 AA4 LEU A 57 ILE A 70 1 14 HELIX 5 AA5 GLY A 77 ASP A 84 1 8 HELIX 6 AA6 ASP A 85 HIS A 91 5 7 HELIX 7 AA7 PHE A 93 THR A 113 1 21 HELIX 8 AA8 ASN A 139 LYS A 148 1 10 HELIX 9 AA9 SER A 149 GLN A 153 5 5 HELIX 10 AB1 ASP A 175 ASN A 193 1 19 HELIX 11 AB2 SER A 205 HIS A 217 1 13 HELIX 12 AB3 GLU A 240 LEU A 242 5 3 HELIX 13 AB4 GLU A 243 LYS A 248 1 6 HELIX 14 AB5 CYS A 263 LYS A 277 1 15 HELIX 15 AB6 ASP A 296 ASP A 310 1 15 HELIX 16 AB7 THR B 6 LYS B 21 1 16 HELIX 17 AB8 GLY B 22 LYS B 35 1 14 HELIX 18 AB9 ASN B 40 GLY B 56 1 17 HELIX 19 AC1 LEU B 57 ILE B 70 1 14 HELIX 20 AC2 GLY B 77 ASP B 84 1 8 HELIX 21 AC3 ASP B 85 HIS B 91 5 7 HELIX 22 AC4 PHE B 93 THR B 113 1 21 HELIX 23 AC5 ASN B 139 LYS B 148 1 10 HELIX 24 AC6 SER B 149 GLN B 153 5 5 HELIX 25 AC7 ASP B 175 ASN B 193 1 19 HELIX 26 AC8 SER B 205 HIS B 217 1 13 HELIX 27 AC9 GLU B 240 LEU B 242 5 3 HELIX 28 AD1 GLU B 243 LYS B 248 1 6 HELIX 29 AD2 CYS B 263 LYS B 277 1 15 HELIX 30 AD3 ASP B 296 GLU B 309 1 14 SHEET 1 AA1 7 ASP A 117 ILE A 121 0 SHEET 2 AA1 7 TYR B 155 GLN B 161 -1 O GLN B 161 N ASP A 117 SHEET 3 AA1 7 LYS B 128 MSE B 133 1 N PHE B 130 O ALA B 158 SHEET 4 AA1 7 VAL B 199 PHE B 204 1 O GLY B 202 N ILE B 131 SHEET 5 AA1 7 GLY B 224 MSE B 228 1 O MSE B 228 N GLY B 203 SHEET 6 AA1 7 LYS B 251 GLY B 257 1 O TYR B 253 N PHE B 225 SHEET 7 AA1 7 HIS B 281 VAL B 286 1 O LYS B 284 N VAL B 254 SHEET 1 AA2 7 HIS A 281 VAL A 286 0 SHEET 2 AA2 7 LYS A 251 GLY A 257 1 N VAL A 254 O LYS A 284 SHEET 3 AA2 7 GLY A 224 MSE A 228 1 N PHE A 225 O TYR A 253 SHEET 4 AA2 7 VAL A 199 PHE A 204 1 N GLY A 203 O MSE A 228 SHEET 5 AA2 7 LYS A 128 MSE A 133 1 N ILE A 131 O GLY A 202 SHEET 6 AA2 7 TYR A 155 GLN A 161 1 O ALA A 158 N PHE A 130 SHEET 7 AA2 7 ASP B 117 ILE B 121 -1 O ASP B 117 N GLN A 161 SHEET 1 AA3 2 ILE A 165 PHE A 167 0 SHEET 2 AA3 2 GLY A 170 PHE A 171 -1 O GLY A 170 N PHE A 167 SHEET 1 AA4 2 ILE B 165 PHE B 167 0 SHEET 2 AA4 2 GLY B 170 PHE B 171 -1 O GLY B 170 N PHE B 167 LINK C MSE A 5 N THR A 6 1555 1555 1.33 LINK C ILE A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N GLU A 32 1555 1555 1.33 LINK C ALA A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N HIS A 63 1555 1555 1.34 LINK C VAL A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N LYS A 66 1555 1555 1.33 LINK C GLN A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N VAL A 100 1555 1555 1.33 LINK C ALA A 132 N MSE A 133 1555 1555 1.34 LINK C MSE A 133 N HIS A 134 1555 1555 1.33 LINK C PHE A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N ALA A 229 1555 1555 1.32 LINK C MSE B 5 N THR B 6 1555 1555 1.34 LINK C ILE B 30 N MSE B 31 1555 1555 1.34 LINK C MSE B 31 N GLU B 32 1555 1555 1.34 LINK C ALA B 61 N MSE B 62 1555 1555 1.33 LINK C MSE B 62 N HIS B 63 1555 1555 1.34 LINK C VAL B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N LYS B 66 1555 1555 1.33 LINK C GLN B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N VAL B 100 1555 1555 1.33 LINK C ALA B 132 N MSE B 133 1555 1555 1.34 LINK C MSE B 133 N HIS B 134 1555 1555 1.32 LINK C PHE B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N ALA B 229 1555 1555 1.33 SITE 1 AC1 4 ASP A 136 TRP A 231 ASP A 262 CYS A 263 SITE 1 AC2 2 TRP B 231 ASP B 262 SITE 1 AC3 3 ASN B 46 TYR B 80 ASP B 84 CRYST1 71.067 42.176 106.032 90.00 92.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014071 0.000000 0.000601 0.00000 SCALE2 0.000000 0.023710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009440 0.00000 HETATM 1 N MSE A 5 45.224 17.481 86.405 1.00 77.54 N ANISOU 1 N MSE A 5 6403 11318 11740 1612 219 -68 N HETATM 2 CA MSE A 5 46.660 17.442 86.872 1.00 76.62 C ANISOU 2 CA MSE A 5 6557 10785 11769 1431 242 -77 C HETATM 3 C MSE A 5 47.348 16.211 86.367 1.00 70.83 C ANISOU 3 C MSE A 5 5779 9954 11177 1018 293 -12 C HETATM 4 O MSE A 5 46.957 15.106 86.717 1.00 71.02 O ANISOU 4 O MSE A 5 5577 10205 11199 820 369 24 O HETATM 5 CB MSE A 5 46.757 17.449 88.405 1.00 77.52 C ANISOU 5 CB MSE A 5 6653 10960 11841 1521 307 -126 C HETATM 6 CG MSE A 5 48.203 17.484 88.887 1.00 75.56 C ANISOU 6 CG MSE A 5 6661 10322 11723 1357 314 -147 C HETATM 7 SE MSE A 5 48.404 17.620 90.839 1.00 84.13 SE ANISOU 7 SE MSE A 5 7886 11359 12721 1630 320 -255 SE HETATM 8 CE MSE A 5 48.037 19.545 91.102 1.00 85.53 C ANISOU 8 CE MSE A 5 8157 11647 12691 2185 208 -339 C