PDB Short entry for 5F59 HEADER TRANSFERASE 04-DEC-15 5F59 TITLE THE CRYSTAL STRUCTURE OF MLL3 SET DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE 2C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MLL3 SET DOMAIN (UNP RESIDUES 4757-4910); COMPND 5 SYNONYM: LYSINE N-METHYLTRANSFERASE 2C,HOMOLOGOUS TO ALR PROTEIN, COMPND 6 MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA PROTEIN 3; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT2C, HALR, KIAA1506, MLL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-SUMO KEYWDS HISTONE METHYLATION, HISTONE METHYLTRANSFERASE, SET DOMAIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,M.LEI,Y.CHEN REVDAT 3 20-MAR-24 5F59 1 JRNL REMARK REVDAT 2 20-APR-16 5F59 1 JRNL REVDAT 1 24-FEB-16 5F59 0 JRNL AUTH Y.LI,J.HAN,Y.ZHANG,F.CAO,Z.LIU,S.LI,J.WU,C.HU,Y.WANG, JRNL AUTH 2 J.SHUAI,J.CHEN,L.CAO,D.LI,P.SHI,C.TIAN,J.ZHANG,Y.DOU,G.LI, JRNL AUTH 3 Y.CHEN,M.LEI JRNL TITL STRUCTURAL BASIS FOR ACTIVITY REGULATION OF MLL FAMILY JRNL TITL 2 METHYLTRANSFERASES. JRNL REF NATURE V. 530 447 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 26886794 JRNL DOI 10.1038/NATURE16952 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.430 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9156 - 5.0865 1.00 1543 170 0.2055 0.2335 REMARK 3 2 5.0865 - 4.0386 1.00 1457 146 0.1519 0.1902 REMARK 3 3 4.0386 - 3.5285 1.00 1427 147 0.1581 0.2166 REMARK 3 4 3.5285 - 3.2061 1.00 1417 140 0.1849 0.2426 REMARK 3 5 3.2061 - 2.9764 1.00 1383 156 0.1979 0.2529 REMARK 3 6 2.9764 - 2.8009 1.00 1396 139 0.2065 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1253 REMARK 3 ANGLE : 1.039 1680 REMARK 3 CHIRALITY : 0.042 179 REMARK 3 PLANARITY : 0.004 211 REMARK 3 DIHEDRAL : 15.750 479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-14; 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRF; SSRF REMARK 200 BEAMLINE : BL17U; BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2818; 0.9793 REMARK 200 MONOCHROMATOR : NULL; SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH8.5, 3M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.52800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.52800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.52800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.52800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 64.52800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 64.52800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 64.52800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 64.52800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 64.52800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 64.52800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 64.52800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 64.52800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 64.52800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 96.79200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.26400 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 96.79200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 96.79200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 96.79200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 32.26400 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 96.79200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 32.26400 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 96.79200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 32.26400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 96.79200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 32.26400 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 32.26400 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 96.79200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 32.26400 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 96.79200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 96.79200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 96.79200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 32.26400 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 96.79200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 96.79200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 32.26400 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 32.26400 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 32.26400 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 96.79200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 32.26400 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 96.79200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 32.26400 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 96.79200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 96.79200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 96.79200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 4890 REMARK 465 GLU A 4891 REMARK 465 ASP A 4892 REMARK 465 ASP A 4893 REMARK 465 GLN A 4894 REMARK 465 HIS A 4895 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A4863 CG CD OE1 OE2 REMARK 470 LYS A4887 CE NZ REMARK 470 ASP A4889 CG OD1 OD2 REMARK 470 LYS A4908 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A4831 31.61 -96.37 REMARK 500 LYS A4887 90.98 61.52 REMARK 500 ASN A4905 37.36 -94.35 REMARK 500 LYS A4908 -31.92 63.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A4851 SG REMARK 620 2 CYS A4899 SG 123.2 REMARK 620 3 CYS A4901 SG 109.0 103.8 REMARK 620 4 CYS A4906 SG 113.3 101.0 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 5002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F5E RELATED DB: PDB REMARK 900 RELATED ID: 5F6L RELATED DB: PDB REMARK 900 RELATED ID: 5F6K RELATED DB: PDB DBREF 5F59 A 4757 4910 UNP Q8NEZ4 KMT2C_HUMAN 4757 4910 SEQRES 1 A 154 SER LYS SER SER GLN TYR ARG LYS MET LYS THR GLU TRP SEQRES 2 A 154 LYS SER ASN VAL TYR LEU ALA ARG SER ARG ILE GLN GLY SEQRES 3 A 154 LEU GLY LEU TYR ALA ALA ARG ASP ILE GLU LYS HIS THR SEQRES 4 A 154 MET VAL ILE GLU TYR ILE GLY THR ILE ILE ARG ASN GLU SEQRES 5 A 154 VAL ALA ASN ARG LYS GLU LYS LEU TYR GLU SER GLN ASN SEQRES 6 A 154 ARG GLY VAL TYR MET PHE ARG MET ASP ASN ASP HIS VAL SEQRES 7 A 154 ILE ASP ALA THR LEU THR GLY GLY PRO ALA ARG TYR ILE SEQRES 8 A 154 ASN HIS SER CYS ALA PRO ASN CYS VAL ALA GLU VAL VAL SEQRES 9 A 154 THR PHE GLU ARG GLY HIS LYS ILE ILE ILE SER SER SER SEQRES 10 A 154 ARG ARG ILE GLN LYS GLY GLU GLU LEU CYS TYR ASP TYR SEQRES 11 A 154 LYS PHE ASP PHE GLU ASP ASP GLN HIS LYS ILE PRO CYS SEQRES 12 A 154 HIS CYS GLY ALA VAL ASN CYS ARG LYS TRP MET HET ZN A5001 1 HET SAH A5002 26 HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 ZN ZN 2+ FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *52(H2 O) HELIX 1 AA1 SER A 4757 TRP A 4769 1 13 HELIX 2 AA2 ASN A 4807 SER A 4819 1 13 HELIX 3 AA3 GLY A 4842 ILE A 4847 5 6 SHEET 1 AA1 2 VAL A4773 ARG A4777 0 SHEET 2 AA1 2 LEU A4783 ALA A4787 -1 O TYR A4786 N TYR A4774 SHEET 1 AA2 3 MET A4796 GLU A4799 0 SHEET 2 AA2 3 GLY A4865 SER A4872 -1 O ILE A4870 N VAL A4797 SHEET 3 AA2 3 CYS A4855 PHE A4862 -1 N VAL A4860 O LYS A4867 SHEET 1 AA3 3 THR A4803 ARG A4806 0 SHEET 2 AA3 3 HIS A4833 ASP A4836 -1 O ASP A4836 N THR A4803 SHEET 3 AA3 3 MET A4826 ARG A4828 -1 N PHE A4827 O ILE A4835 SHEET 1 AA4 2 ASN A4848 HIS A4849 0 SHEET 2 AA4 2 CYS A4883 TYR A4884 1 O TYR A4884 N ASN A4848 SHEET 1 AA5 2 ILE A4897 PRO A4898 0 SHEET 2 AA5 2 TRP A4909 MET A4910 -1 O MET A4910 N ILE A4897 LINK SG CYS A4851 ZN ZN A5001 1555 1555 2.17 LINK SG CYS A4899 ZN ZN A5001 1555 1555 2.09 LINK SG CYS A4901 ZN ZN A5001 1555 1555 2.32 LINK SG CYS A4906 ZN ZN A5001 1555 1555 2.42 SITE 1 AC1 4 CYS A4851 CYS A4899 CYS A4901 CYS A4906 SITE 1 AC2 16 ILE A4780 GLN A4781 GLY A4782 LEU A4783 SITE 2 AC2 16 ARG A4822 TYR A4825 ARG A4845 TYR A4846 SITE 3 AC2 16 ASN A4848 HIS A4849 TYR A4886 PRO A4898 SITE 4 AC2 16 CYS A4899 HIS A4900 MET A4910 HOH A5118 CRYST1 129.056 129.056 129.056 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007749 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007749 0.00000