PDB Short entry for 5FOR HEADER CELL CYCLE 25-NOV-15 5FOR TITLE CRYPTIC TIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOINOSITIDE 3-KINASE ADAPTER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TIR DOMAIN, RESIDUES 7-142; COMPND 5 SYNONYM: B-CELL ADAPTER FOR PHOSPHOINOSITIDE 3-KINASE, B-CELL COMPND 6 PHOSPHOINOSITIDE 3-KINASE ADAPTER PROTEIN 1, B CELL ADAPTOR FOR COMPND 7 PHOSPHOINOSITIDE 3-KINASE, BCAP; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CELL CYCLE, TIR, IMMUME RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR S.HALABI,N.J.GAY,M.C.MONCRIEFFE REVDAT 3 01-MAR-17 5FOR 1 JRNL REVDAT 2 14-DEC-16 5FOR 1 JRNL REVDAT 1 07-DEC-16 5FOR 0 JRNL AUTH S.HALABI,E.SEKINE,B.VERSTAK,N.J.GAY,M.C.MONCRIEFFE JRNL TITL STRUCTURE OF THE TOLL/INTERLEUKIN-1 RECEPTOR (TIR) DOMAIN OF JRNL TITL 2 THE B-CELL ADAPTOR THAT LINKS PHOSPHOINOSITIDE METABOLISM JRNL TITL 3 WITH THE NEGATIVE REGULATION OF THE TOLL-LIKE RECEPTOR (TLR) JRNL TITL 4 SIGNALOSOME. JRNL REF J. BIOL. CHEM. V. 292 652 2017 JRNL REFN ESSN 1083-351X JRNL PMID 27909057 JRNL DOI 10.1074/JBC.M116.761528 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2098 - 4.5418 1.00 2435 103 0.1731 0.2346 REMARK 3 2 4.5418 - 3.6055 1.00 2376 152 0.1616 0.2205 REMARK 3 3 3.6055 - 3.1499 1.00 2368 144 0.2014 0.2477 REMARK 3 4 3.1499 - 2.8619 1.00 2391 117 0.2293 0.2401 REMARK 3 5 2.8619 - 2.6568 0.98 2346 148 0.2288 0.3215 REMARK 3 6 2.6568 - 2.5002 0.99 2365 121 0.2408 0.3153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1152 REMARK 3 ANGLE : 1.593 1572 REMARK 3 CHIRALITY : 0.066 173 REMARK 3 PLANARITY : 0.009 200 REMARK 3 DIHEDRAL : 20.586 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.3123 19.5105 8.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.5824 T22: 0.4896 REMARK 3 T33: 0.3825 T12: -0.1352 REMARK 3 T13: -0.0632 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 0.6265 L22: 0.7389 REMARK 3 L33: 0.4777 L12: -0.0265 REMARK 3 L13: 0.3187 L23: -0.1918 REMARK 3 S TENSOR REMARK 3 S11: 0.2988 S12: -0.3877 S13: -0.1775 REMARK 3 S21: 0.4465 S22: -0.2204 S23: -0.3400 REMARK 3 S31: -0.2223 S32: -0.0572 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.9809 11.7095 -2.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.2645 REMARK 3 T33: 0.4805 T12: -0.0099 REMARK 3 T13: 0.0637 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.3107 L22: 1.1519 REMARK 3 L33: 1.1012 L12: 0.2584 REMARK 3 L13: 1.4905 L23: -0.3508 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.0211 S13: -0.6481 REMARK 3 S21: -0.3264 S22: -0.0605 S23: 0.0046 REMARK 3 S31: -0.0886 S32: 0.0066 S33: -0.0519 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.6949 20.3848 -2.0165 REMARK 3 T TENSOR REMARK 3 T11: 0.3966 T22: 0.4521 REMARK 3 T33: 0.3921 T12: -0.0082 REMARK 3 T13: 0.0149 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.6186 L22: 1.1609 REMARK 3 L33: 0.5811 L12: 0.2598 REMARK 3 L13: 0.6502 L23: -0.5456 REMARK 3 S TENSOR REMARK 3 S11: 0.1733 S12: -0.1357 S13: -0.1942 REMARK 3 S21: -0.3401 S22: -0.2215 S23: 0.0226 REMARK 3 S31: -0.5789 S32: -0.4854 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-15. REMARK 100 THE PDBE ID CODE IS EBI-65637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.2 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 1-10% PEG400 1.5-2.3 REMARK 280 M AMMONIUM SULPHATE .001M I3C REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.60800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.30400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.60800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.30400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.60800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 14.30400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.60800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 SER A 49 OG REMARK 470 PHE A 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 51 OG REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LEU A 57 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 33 O8 I3C A 1141 1.31 REMARK 500 OD1 ASP A 124 O HOH A 2018 2.05 REMARK 500 OE1 GLU A 18 NH2 ARG A 43 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 107 OH2 1PE A 1140 10664 1.27 REMARK 500 CD GLU A 107 OH2 1PE A 1140 10664 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 119 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -169.33 -101.65 REMARK 500 CYS A 100 78.56 -108.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 119 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3C A 1141 DBREF 5FOR A 4 139 UNP Q6ZUJ8 BCAP_HUMAN 7 142 SEQADV 5FOR SER A 1 UNP Q6ZUJ8 EXPRESSION TAG SEQADV 5FOR ASN A 2 UNP Q6ZUJ8 EXPRESSION TAG SEQADV 5FOR ALA A 3 UNP Q6ZUJ8 EXPRESSION TAG SEQADV 5FOR SER A 80 UNP Q6ZUJ8 ALA 83 CONFLICT SEQRES 1 A 139 SER ASN ALA PRO ARG GLY CYS ASP ILE LEU ILE VAL TYR SEQRES 2 A 139 SER PRO ASP ALA GLU GLU TRP CYS GLN TYR LEU GLN THR SEQRES 3 A 139 LEU PHE LEU SER SER ARG GLN VAL ARG SER GLN MLY ILE SEQRES 4 A 139 LEU THR HIS ARG LEU GLY PRO GLU ALA SER PHE SER ALA SEQRES 5 A 139 GLU ASP LEU SER LEU PHE LEU SER THR ARG CYS VAL VAL SEQRES 6 A 139 VAL LEU LEU SER ALA GLU LEU VAL GLN HIS PHE HIS MLY SEQRES 7 A 139 PRO SER LEU LEU PRO LEU LEU GLN ARG ALA PHE HIS PRO SEQRES 8 A 139 PRO HIS ARG VAL VAL ARG LEU LEU CYS GLY VAL ARG ASP SEQRES 9 A 139 SER GLU GLU PHE LEU ASP PHE PHE PRO ASP TRP ALA HIS SEQRES 10 A 139 TRP GLN GLU LEU THR CYS ASP ASP GLU PRO GLU THR TYR SEQRES 11 A 139 VAL ALA ALA VAL LYS MLY ALA ILE SER MODRES 5FOR MLY A 38 LYS N-DIMETHYL-LYSINE MODRES 5FOR MLY A 78 LYS N-DIMETHYL-LYSINE MODRES 5FOR MLY A 136 LYS N-DIMETHYL-LYSINE HET MLY A 38 11 HET MLY A 78 11 HET MLY A 136 11 HET 1PE A1140 16 HET I3C A1141 16 HETNAM MLY N-DIMETHYL-LYSINE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM I3C 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID HETSYN 1PE PEG400 HETSYN I3C 5-AMINO-2,4,6-TRIIODOISOPHTHALIC ACID FORMUL 1 MLY 3(C8 H18 N2 O2) FORMUL 2 1PE C10 H22 O6 FORMUL 3 I3C C8 H4 I3 N O4 FORMUL 4 HOH *20(H2 O) HELIX 1 1 SER A 14 ASP A 16 5 3 HELIX 2 2 ALA A 17 SER A 31 1 15 HELIX 3 3 SER A 51 THR A 61 1 11 HELIX 4 4 SER A 69 HIS A 77 1 9 HELIX 5 5 LEU A 81 PHE A 89 1 9 HELIX 6 6 PRO A 91 HIS A 93 5 3 HELIX 7 7 SER A 105 PHE A 111 5 7 HELIX 8 8 ASP A 114 TRP A 118 5 5 HELIX 9 9 GLU A 126 SER A 139 1 14 SHEET 1 AA 5 ILE A 39 ARG A 43 0 SHEET 2 AA 5 ILE A 9 TYR A 13 1 O ILE A 9 N LEU A 40 SHEET 3 AA 5 CYS A 63 LEU A 68 1 O CYS A 63 N LEU A 10 SHEET 4 AA 5 VAL A 95 LEU A 99 1 O VAL A 96 N VAL A 66 SHEET 5 AA 5 GLN A 119 LEU A 121 1 O GLN A 119 N ARG A 97 LINK C GLN A 37 N MLY A 38 1555 1555 1.33 LINK C MLY A 38 N ILE A 39 1555 1555 1.33 LINK C HIS A 77 N MLY A 78 1555 1555 1.33 LINK C MLY A 78 N PRO A 79 1555 1555 1.35 LINK C LYS A 135 N MLY A 136 1555 1555 1.33 LINK C MLY A 136 N ALA A 137 1555 1555 1.33 CISPEP 1 GLY A 6 CYS A 7 0 5.73 CISPEP 2 GLY A 45 PRO A 46 0 -9.29 CISPEP 3 HIS A 90 PRO A 91 0 -7.61 SITE 1 AC1 7 GLU A 19 TRP A 20 TYR A 23 ARG A 103 SITE 2 AC1 7 GLU A 107 PHE A 108 HOH A2014 SITE 1 AC2 6 LEU A 27 SER A 30 SER A 31 GLN A 33 SITE 2 AC2 6 VAL A 131 HOH A2005 CRYST1 135.042 135.042 42.912 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007405 0.004275 0.000000 0.00000 SCALE2 0.000000 0.008551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023304 0.00000