PDB Short entry for 5FRO HEADER TRANSFERASE 18-DEC-15 5FRO TITLE CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN TITLE 2 COMPLEX WITH MAGNESIUM AND THE INSTI XZ446 (COMPOUND 4F) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFV INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: UNIPROT KB P14350; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP COMPND 8 *TP*CP*GP*CP*A)-3'; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP *AP*CP*A)- COMPND 13 3'; COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU); SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 STRAIN: HSRV2; SOURCE 6 VARIANT: POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PC2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSSH6P-PFV-INFL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS RECOMBINATION, VIRAL PROTEIN/DNA, PROTEIN-DNA COMPLEX, TETRAMER, DNA KEYWDS 2 INTEGRATION, ENDONUCLEASE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 3 NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE, VIRAL KEYWDS 4 NUCLEOPROTEIN, VIRION, DNA- BINDING, ZINC BINDING, HHCC MOTIF, VIRAL KEYWDS 5 PROTEIN, INHIBITOR, DNA-BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.P.MASKELL,V.E.PYE,P.CHEREPANOV REVDAT 6 10-JAN-24 5FRO 1 REMARK LINK REVDAT 5 10-APR-19 5FRO 1 SOURCE REVDAT 4 06-FEB-19 5FRO 1 REMARK REVDAT 3 30-JAN-19 5FRO 1 REMARK REVDAT 2 27-APR-16 5FRO 1 JRNL REVDAT 1 17-FEB-16 5FRO 0 JRNL AUTH X.Z.ZHAO,S.J.SMITH,D.P.MASKELL,M.METIFIOT,V.E.PYE,K.FESEN, JRNL AUTH 2 C.MARCHAND,Y.POMMIER,P.CHEREPANOV,S.H.HUGHES,T.R.J.BURKE JRNL TITL HIV-1 INTEGRASE STRAND TRANSFER INHIBITORS WITH REDUCED JRNL TITL 2 SUSCEPTIBILITY TO DRUG RESISTANT MUTANT INTEGRASES. JRNL REF ACS CHEM.BIOL. V. 11 1074 2016 JRNL REFN ISSN 1554-8929 JRNL PMID 26808478 JRNL DOI 10.1021/ACSCHEMBIO.5B00948 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 44474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.5458 - 8.2879 0.94 2625 130 0.1790 0.1959 REMARK 3 2 8.2879 - 6.5816 0.95 2601 126 0.1659 0.1703 REMARK 3 3 6.5816 - 5.7505 0.95 2672 109 0.1758 0.1999 REMARK 3 4 5.7505 - 5.2252 0.96 2623 157 0.1545 0.1778 REMARK 3 5 5.2252 - 4.8509 0.96 2641 150 0.1403 0.1656 REMARK 3 6 4.8509 - 4.5650 0.97 2642 158 0.1371 0.1334 REMARK 3 7 4.5650 - 4.3365 0.96 2660 126 0.1353 0.1409 REMARK 3 8 4.3365 - 4.1478 0.97 2622 175 0.1409 0.1560 REMARK 3 9 4.1478 - 3.9881 0.97 2655 163 0.1561 0.1697 REMARK 3 10 3.9881 - 3.8505 0.97 2679 147 0.1651 0.1962 REMARK 3 11 3.8505 - 3.7302 0.97 2668 137 0.1737 0.1780 REMARK 3 12 3.7302 - 3.6236 0.97 2703 131 0.1763 0.1886 REMARK 3 13 3.6236 - 3.5282 0.97 2692 147 0.1796 0.2049 REMARK 3 14 3.5282 - 3.4421 0.97 2677 139 0.1961 0.2384 REMARK 3 15 3.4421 - 3.3639 0.97 2652 168 0.1964 0.2330 REMARK 3 16 3.3639 - 3.2923 0.98 2688 152 0.1908 0.2688 REMARK 3 17 3.2923 - 3.2264 0.97 2731 117 0.2012 0.1956 REMARK 3 18 3.2264 - 3.1656 0.97 2646 135 0.2137 0.2293 REMARK 3 19 3.1656 - 3.1090 0.97 2708 120 0.2123 0.2720 REMARK 3 20 3.1090 - 3.0563 0.98 2720 145 0.2157 0.2710 REMARK 3 21 3.0563 - 3.0070 0.98 2675 138 0.2420 0.2454 REMARK 3 22 3.0070 - 2.9608 0.97 2733 105 0.2386 0.2526 REMARK 3 23 2.9608 - 2.9172 0.98 2697 138 0.2518 0.3361 REMARK 3 24 2.9172 - 2.8761 0.98 2706 159 0.2663 0.3048 REMARK 3 25 2.8761 - 2.8373 0.97 2683 164 0.2740 0.2741 REMARK 3 26 2.8373 - 2.8004 0.98 2660 151 0.2623 0.3094 REMARK 3 27 2.8004 - 2.7654 0.98 2708 137 0.2701 0.3211 REMARK 3 28 2.7654 - 2.7321 0.98 2707 145 0.2857 0.3431 REMARK 3 29 2.7321 - 2.7003 0.98 2686 156 0.2977 0.3362 REMARK 3 30 2.7003 - 2.6700 0.98 2706 149 0.3004 0.2820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5410 REMARK 3 ANGLE : 0.618 7500 REMARK 3 CHIRALITY : 0.040 836 REMARK 3 PLANARITY : 0.005 822 REMARK 3 DIHEDRAL : 15.664 3087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:98) REMARK 3 ORIGIN FOR THE GROUP (A): -70.4049 26.5850 -57.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.4351 T22: 0.5193 REMARK 3 T33: 0.5937 T12: -0.0629 REMARK 3 T13: -0.0748 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 0.3750 L22: 0.5242 REMARK 3 L33: 0.5963 L12: 0.2280 REMARK 3 L13: -0.0039 L23: 0.5022 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.0263 S13: -0.1201 REMARK 3 S21: -0.1162 S22: -0.1473 S23: 0.2885 REMARK 3 S31: -0.0323 S32: -0.2863 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 99:280) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1996 36.7831 -8.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.4252 T22: 0.4379 REMARK 3 T33: 0.4401 T12: -0.0128 REMARK 3 T13: 0.0394 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.5779 L22: 0.3700 REMARK 3 L33: 1.1168 L12: 0.1707 REMARK 3 L13: 0.2581 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.1668 S13: -0.0370 REMARK 3 S21: 0.0493 S22: -0.0401 S23: -0.0009 REMARK 3 S31: 0.1752 S32: 0.0229 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 281:316) REMARK 3 ORIGIN FOR THE GROUP (A): -47.0943 50.8684 -2.5025 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.5996 REMARK 3 T33: 0.6202 T12: 0.0104 REMARK 3 T13: 0.0450 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.3238 L22: 0.0566 REMARK 3 L33: 0.1519 L12: -0.1080 REMARK 3 L13: -0.2043 L23: 0.0916 REMARK 3 S TENSOR REMARK 3 S11: -0.2438 S12: -0.1865 S13: 0.0997 REMARK 3 S21: -0.1614 S22: 0.0313 S23: 0.1896 REMARK 3 S31: -0.4302 S32: -0.2617 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 317:345) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8040 24.4740 -29.9594 REMARK 3 T TENSOR REMARK 3 T11: 0.5035 T22: 0.5667 REMARK 3 T33: 0.5912 T12: -0.1485 REMARK 3 T13: 0.0509 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.0790 L22: 0.0712 REMARK 3 L33: 0.1681 L12: 0.0181 REMARK 3 L13: 0.0185 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.3147 S13: -0.2688 REMARK 3 S21: -0.0193 S22: 0.0738 S23: 0.0928 REMARK 3 S31: 0.6919 S32: 0.0921 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 346:375) REMARK 3 ORIGIN FOR THE GROUP (A): -55.8636 26.5540 -24.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.6167 T22: 0.5044 REMARK 3 T33: 0.5352 T12: -0.1378 REMARK 3 T13: 0.0742 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.2040 L22: 0.0498 REMARK 3 L33: 0.2244 L12: 0.0684 REMARK 3 L13: -0.2229 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.2491 S12: -0.1541 S13: 0.0485 REMARK 3 S21: -0.1380 S22: 0.1053 S23: 0.0364 REMARK 3 S31: 0.4348 S32: -0.3629 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 116:212) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9623 41.0629 13.2021 REMARK 3 T TENSOR REMARK 3 T11: 0.4850 T22: 0.6720 REMARK 3 T33: 0.4675 T12: 0.0156 REMARK 3 T13: 0.0318 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.5732 L22: 0.3766 REMARK 3 L33: 0.5504 L12: -0.2238 REMARK 3 L13: -0.0640 L23: -0.0287 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.2435 S13: 0.0635 REMARK 3 S21: 0.0429 S22: 0.0256 S23: -0.0031 REMARK 3 S31: 0.0293 S32: 0.3034 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 213:277) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9769 33.2484 18.5706 REMARK 3 T TENSOR REMARK 3 T11: 0.5942 T22: 0.7455 REMARK 3 T33: 0.4578 T12: -0.0164 REMARK 3 T13: 0.0742 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.2404 L22: 0.3370 REMARK 3 L33: 0.4048 L12: 0.0958 REMARK 3 L13: -0.2449 L23: -0.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.5446 S13: -0.0646 REMARK 3 S21: 0.2898 S22: 0.1070 S23: 0.1767 REMARK 3 S31: 0.0984 S32: -0.2499 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 278:299) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9591 19.3990 26.9623 REMARK 3 T TENSOR REMARK 3 T11: 1.3164 T22: 1.1553 REMARK 3 T33: 1.3536 T12: -0.1356 REMARK 3 T13: 0.0935 T23: 0.1909 REMARK 3 L TENSOR REMARK 3 L11: 0.0481 L22: 0.0355 REMARK 3 L33: -0.0028 L12: 0.0433 REMARK 3 L13: 0.0076 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.2346 S12: -0.0973 S13: 0.0735 REMARK 3 S21: 0.1478 S22: -0.0169 S23: 0.5166 REMARK 3 S31: 0.5213 S32: -0.5762 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1630 32.8180 -13.3457 REMARK 3 T TENSOR REMARK 3 T11: 0.6336 T22: 0.6300 REMARK 3 T33: 0.5782 T12: -0.1728 REMARK 3 T13: 0.0342 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 0.1310 L22: 0.0735 REMARK 3 L33: 0.0052 L12: -0.0973 REMARK 3 L13: -0.0298 L23: 0.0231 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.6976 S13: 0.2131 REMARK 3 S21: 0.4203 S22: 0.0786 S23: 0.1202 REMARK 3 S31: 0.5220 S32: -0.4330 S33: 0.0029 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 5:19) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9919 66.5549 -14.1435 REMARK 3 T TENSOR REMARK 3 T11: 0.5806 T22: 0.4232 REMARK 3 T33: 0.5701 T12: -0.0042 REMARK 3 T13: 0.0380 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.2333 L22: 0.2582 REMARK 3 L33: 0.4120 L12: 0.2568 REMARK 3 L13: -0.0824 L23: -0.2073 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: -0.0507 S13: 0.0435 REMARK 3 S21: 0.0622 S22: -0.2586 S23: 0.1214 REMARK 3 S31: -0.4172 S32: -0.2204 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN D AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0615 80.5044 -13.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.8148 T22: 0.4535 REMARK 3 T33: 0.5674 T12: -0.0010 REMARK 3 T13: 0.1119 T23: -0.0745 REMARK 3 L TENSOR REMARK 3 L11: 0.0525 L22: 0.1385 REMARK 3 L33: 0.2023 L12: 0.0392 REMARK 3 L13: 0.0063 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: -0.2133 S13: -0.1864 REMARK 3 S21: 0.3622 S22: -0.4665 S23: 0.2485 REMARK 3 S31: 0.3029 S32: 0.0797 S33: -0.0104 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN D AND RESID 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7172 52.3941 -19.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.5411 T22: 0.4927 REMARK 3 T33: 0.6101 T12: -0.0409 REMARK 3 T13: 0.0058 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.1734 L22: 0.0649 REMARK 3 L33: 0.0707 L12: 0.0426 REMARK 3 L13: -0.0481 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.1452 S13: 0.0019 REMARK 3 S21: 0.2319 S22: -0.4738 S23: -0.0542 REMARK 3 S31: 0.0031 S32: -0.0619 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 56.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4BDZ REMARK 200 REMARK 200 REMARK: PROTEIN AND DNA COMPONENTS USED FROM 4BDZ REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35 M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, 4.8% (V/V) 1,6-HEXANEDIOL, 50 MM MES-NAOH, 1MM EDTA, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.88500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 79.95000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.94250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.95000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 79.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.82750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.94250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 79.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.82750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -345.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.88500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 THR A 382 REMARK 465 ALA A 383 REMARK 465 THR A 384 REMARK 465 MET A 385 REMARK 465 ASP A 386 REMARK 465 HIS A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LYS A 390 REMARK 465 ASN A 391 REMARK 465 GLU A 392 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 CYS B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 TYR B 20 REMARK 465 ILE B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 TYR B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 THR B 29 REMARK 465 TYR B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 GLU B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLY B 44 REMARK 465 VAL B 45 REMARK 465 LYS B 46 REMARK 465 ILE B 47 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 ILE B 57 REMARK 465 VAL B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 HIS B 62 REMARK 465 ASN B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 THR B 72 REMARK 465 LEU B 73 REMARK 465 LEU B 74 REMARK 465 LYS B 75 REMARK 465 ILE B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 78 REMARK 465 LEU B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 TRP B 82 REMARK 465 PRO B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 LYS B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 CYS B 96 REMARK 465 GLN B 97 REMARK 465 GLN B 98 REMARK 465 CYS B 99 REMARK 465 LEU B 100 REMARK 465 ILE B 101 REMARK 465 THR B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 SER B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 PRO B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 ILE B 298 REMARK 465 ARG B 299 REMARK 465 THR B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 TYR B 303 REMARK 465 HIS B 304 REMARK 465 PRO B 305 REMARK 465 SER B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 TRP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 VAL B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 465 TRP B 337 REMARK 465 HIS B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 LEU B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 PRO B 349 REMARK 465 ARG B 350 REMARK 465 THR B 351 REMARK 465 VAL B 352 REMARK 465 VAL B 353 REMARK 465 ILE B 354 REMARK 465 LEU B 355 REMARK 465 ASP B 356 REMARK 465 HIS B 357 REMARK 465 LEU B 358 REMARK 465 GLY B 359 REMARK 465 ASN B 360 REMARK 465 ASN B 361 REMARK 465 ARG B 362 REMARK 465 THR B 363 REMARK 465 VAL B 364 REMARK 465 SER B 365 REMARK 465 ILE B 366 REMARK 465 ASP B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 ASN B 376 REMARK 465 GLY B 377 REMARK 465 THR B 378 REMARK 465 THR B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 THR B 382 REMARK 465 ALA B 383 REMARK 465 THR B 384 REMARK 465 MET B 385 REMARK 465 ASP B 386 REMARK 465 HIS B 387 REMARK 465 LEU B 388 REMARK 465 GLU B 389 REMARK 465 LYS B 390 REMARK 465 ASN B 391 REMARK 465 GLU B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 292 CG CD1 CD2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 174 0.21 -68.98 REMARK 500 ALA A 177 146.14 -173.51 REMARK 500 GLN A 186 40.68 -88.72 REMARK 500 HIS A 213 77.44 -159.37 REMARK 500 ARG A 329 75.07 -118.80 REMARK 500 GLN B 186 40.04 -81.68 REMARK 500 SER B 216 -86.21 -136.10 REMARK 500 ASN B 280 91.58 -67.74 REMARK 500 LEU B 284 -30.34 77.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 393 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 66 ND1 109.9 REMARK 620 3 CYS A 96 SG 107.6 104.5 REMARK 620 4 CYS A 99 SG 101.9 117.9 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 185 OD2 82.5 REMARK 620 3 HOH A 397 O 91.8 84.9 REMARK 620 4 HOH A 398 O 86.9 163.7 83.2 REMARK 620 5 XXJ A1376 OAF 81.7 94.5 173.5 96.1 REMARK 620 6 XXJ A1376 NAV 161.5 101.5 106.5 92.4 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 395 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 GLU A 221 OE1 98.4 REMARK 620 3 GLU A 221 OE2 78.8 60.2 REMARK 620 4 HOH A 396 O 82.1 97.3 147.5 REMARK 620 5 XXJ A1376 OAF 87.9 144.3 87.0 118.4 REMARK 620 6 XXJ A1376 OAC 156.8 85.1 83.2 120.5 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 128 OD1 REMARK 620 2 ASP B 185 OD2 81.3 REMARK 620 3 DA C 19 O3' 144.5 75.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XXJ A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1020 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FRM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN REMARK 900 COMPLEX WITH MAGNESIUM AND THE INSTI XZ384 (COMPOUND 4A) REMARK 900 RELATED ID: 5FRN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN REMARK 900 COMPLEX WITH MAGNESIUM AND THE INSTI XZ419 (COMPOUND 4C) REMARK 999 REMARK 999 SEQUENCE REMARK 999 SYNTHETIC DBREF 5FRO A 0 392 UNP P14350 POL_FOAMV 751 1143 DBREF 5FRO B 0 392 UNP P14350 POL_FOAMV 751 1143 DBREF 5FRO C 1 19 PDB 5FRO 5FRO 1 19 DBREF 5FRO D 1 17 PDB 5FRO 5FRO 1 17 SEQADV 5FRO GLY A -2 UNP P14350 EXPRESSION TAG SEQADV 5FRO PRO A -1 UNP P14350 EXPRESSION TAG SEQADV 5FRO SER A 217 UNP P14350 GLY 968 VARIANT SEQADV 5FRO GLY B -2 UNP P14350 EXPRESSION TAG SEQADV 5FRO PRO B -1 UNP P14350 EXPRESSION TAG SEQADV 5FRO SER B 217 UNP P14350 GLY 968 VARIANT SEQRES 1 A 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 A 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 A 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 A 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 A 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 A 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 A 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 A 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 A 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 A 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 A 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 A 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 A 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 A 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 A 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 A 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 A 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 A 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 A 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 A 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 A 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 A 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 A 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 A 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 A 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 A 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 A 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 A 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 A 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 A 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 A 395 LEU GLU LYS ASN GLU SEQRES 1 B 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 B 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 B 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 B 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 B 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 B 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 B 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 B 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 B 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 B 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 B 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 B 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 B 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 B 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 B 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 B 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 B 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 B 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 B 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 B 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 B 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 B 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 B 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 B 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 B 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 B 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 B 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 B 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 B 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 B 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 B 395 LEU GLU LYS ASN GLU SEQRES 1 C 19 DA DT DT DG DT DC DA DT DG DG DA DA DT SEQRES 2 C 19 DT DT DC DG DC DA SEQRES 1 D 17 DT DG DC DG DA DA DA DT DT DC DC DA DT SEQRES 2 D 17 DG DA DC DA HET ZN A 393 1 HET MG A 394 1 HET MG A 395 1 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET XXJ A1376 36 HET GOL A1377 6 HET GOL A1378 6 HET SO4 B 393 5 HET GOL B1298 6 HET GOL B1299 6 HET MG B1404 1 HET GOL C1020 6 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM XXJ 4-AZANYL-N-[[2,4-BIS(FLUORANYL)PHENYL]METHYL]-1- HETNAM 2 XXJ OXIDANYL-2-OXIDANYLIDENE-6-[2-(PHENYLSULFONYL)ETHYL]- HETNAM 3 XXJ 1,8-NAPHTHYRIDINE-3-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN ZN 2+ FORMUL 6 MG 3(MG 2+) FORMUL 8 SO4 5(O4 S 2-) FORMUL 12 XXJ C24 H20 F2 N4 O5 S FORMUL 13 GOL 5(C3 H8 O3) FORMUL 20 HOH *195(H2 O) HELIX 1 1 ASP A 9 GLY A 18 1 10 HELIX 2 2 PRO A 50 LEU A 64 1 15 HELIX 3 3 GLY A 68 TYR A 80 1 13 HELIX 4 4 ASN A 84 GLY A 94 1 11 HELIX 5 5 CYS A 96 ASN A 103 1 8 HELIX 6 6 SER A 162 THR A 174 1 13 HELIX 7 7 GLY A 187 SER A 192 1 6 HELIX 8 8 SER A 192 ARG A 202 1 11 HELIX 9 9 HIS A 213 SER A 216 5 4 HELIX 10 10 SER A 217 LEU A 235 1 19 HELIX 11 11 TRP A 242 ASP A 244 5 3 HELIX 12 12 LEU A 245 ASN A 255 1 11 HELIX 13 13 THR A 264 GLY A 271 1 8 HELIX 14 14 THR A 287 SER A 301 1 15 HELIX 15 15 SER B 162 THR B 174 1 13 HELIX 16 16 GLY B 187 SER B 192 1 6 HELIX 17 17 SER B 192 ARG B 202 1 11 HELIX 18 18 SER B 217 VAL B 236 1 20 HELIX 19 19 LYS B 241 ASN B 255 1 15 HELIX 20 20 THR B 264 GLY B 271 1 8 HELIX 21 21 THR B 287 GLU B 297 1 11 SHEET 1 AA 3 TYR A 30 GLU A 33 0 SHEET 2 AA 3 LYS A 36 ARG A 41 -1 O LYS A 36 N GLU A 33 SHEET 3 AA 3 GLY A 44 ILE A 47 -1 O GLY A 44 N ARG A 41 SHEET 1 AB 2 ALA A 108 SER A 109 0 SHEET 2 AB 2 SER A 314 TRP A 315 1 N TRP A 315 O ALA A 108 SHEET 1 AC 5 THR A 153 THR A 158 0 SHEET 2 AC 5 TYR A 141 ASP A 147 -1 O TYR A 141 N THR A 158 SHEET 3 AC 5 LYS A 124 ILE A 130 -1 O PHE A 126 N VAL A 146 SHEET 4 AC 5 VAL A 181 SER A 184 1 O VAL A 181 N PHE A 125 SHEET 5 AC 5 HIS A 205 PHE A 208 1 O HIS A 205 N ILE A 182 SHEET 1 AD 5 ASN A 361 SER A 365 0 SHEET 2 AD 5 THR A 351 LEU A 355 -1 O VAL A 352 N VAL A 364 SHEET 3 AD 5 SER A 341 ASN A 348 -1 O THR A 342 N LEU A 355 SHEET 4 AD 5 LEU A 322 GLU A 325 -1 O VAL A 323 N SER A 341 SHEET 5 AD 5 LEU A 369 PRO A 371 -1 O LYS A 370 N GLN A 324 SHEET 1 BA 5 THR B 153 THR B 158 0 SHEET 2 BA 5 TYR B 141 ASP B 147 -1 O TYR B 141 N THR B 158 SHEET 3 BA 5 LYS B 124 ILE B 130 -1 O PHE B 126 N VAL B 146 SHEET 4 BA 5 VAL B 181 SER B 184 1 O VAL B 181 N PHE B 125 SHEET 5 BA 5 HIS B 205 PHE B 208 1 O HIS B 205 N ILE B 182 LINK NE2 HIS A 62 ZN ZN A 393 1555 1555 1.99 LINK ND1 HIS A 66 ZN ZN A 393 1555 1555 2.03 LINK SG CYS A 96 ZN ZN A 393 1555 1555 2.27 LINK SG CYS A 99 ZN ZN A 393 1555 1555 2.28 LINK OD1 ASP A 128 MG MG A 394 1555 1555 2.17 LINK OD2 ASP A 128 MG MG A 395 1555 1555 2.18 LINK OD2 ASP A 185 MG MG A 394 1555 1555 2.18 LINK OE1 GLU A 221 MG MG A 395 1555 1555 2.22 LINK OE2 GLU A 221 MG MG A 395 1555 1555 2.15 LINK MG MG A 394 O HOH A 397 1555 1555 2.06 LINK MG MG A 394 O HOH A 398 1555 1555 2.07 LINK MG MG A 394 OAF XXJ A1376 1555 1555 2.11 LINK MG MG A 394 NAV XXJ A1376 1555 1555 2.04 LINK MG MG A 395 O HOH A 396 1555 1555 2.07 LINK MG MG A 395 OAF XXJ A1376 1555 1555 2.06 LINK MG MG A 395 OAC XXJ A1376 1555 1555 2.18 LINK OD1 ASP B 128 MG MG B1404 1555 1555 2.23 LINK OD2 ASP B 185 MG MG B1404 1555 1555 2.29 LINK MG MG B1404 O3' DA C 19 1555 3555 2.43 CISPEP 1 GLY A 131 PRO A 132 0 3.39 CISPEP 2 GLY B 131 PRO B 132 0 1.13 SITE 1 AC1 4 HIS A 62 HIS A 66 CYS A 96 CYS A 99 SITE 1 AC2 5 ASP A 128 ASP A 185 HOH A 397 HOH A 398 SITE 2 AC2 5 XXJ A1376 SITE 1 AC3 5 ASP A 128 GLU A 221 HOH A 396 XXJ A1376 SITE 2 AC3 5 DA D 17 SITE 1 AC4 4 PRO A 135 SER A 136 GLN A 137 LYS A 241 SITE 1 AC5 4 GLY A 187 ALA A 188 XXJ A1376 HOH A2056 SITE 1 AC6 5 LYS A 228 SER A 332 LEU A 333 ARG A 336 SITE 2 AC6 5 HOH A2092 SITE 1 AC7 3 HIS A 338 LYS A 339 HIS A 357 SITE 1 AC8 17 ASP A 128 ASP A 185 GLN A 186 GLY A 187 SITE 2 AC8 17 TYR A 212 PRO A 214 GLN A 215 GLU A 221 SITE 3 AC8 17 MG A 394 MG A 395 HOH A 398 SO4 A 408 SITE 4 AC8 17 HOH A2082 HOH A2083 DG C 4 DC D 16 SITE 5 AC8 17 DA D 17 SITE 1 AC9 2 SER A 164 HOH A2059 SITE 1 BC1 6 ARG A 114 TYR A 303 PRO A 305 HOH A2143 SITE 2 BC1 6 DC C 6 GOL C1020 SITE 1 BC2 5 LYS B 219 ARG B 222 SER B 258 PRO B 259 SITE 2 BC2 5 VAL B 260 SITE 1 BC3 5 LEU A 292 GLN A 296 GLN B 267 GLY B 271 SITE 2 BC3 5 ASP B 273 SITE 1 BC4 4 LEU B 155 PRO B 157 TYR B 243 GLN B 250 SITE 1 BC5 3 ASP B 128 ASP B 185 DA C 19 SITE 1 BC6 9 VAL A 260 TYR A 303 GOL A1378 HOH A2106 SITE 2 BC6 9 HOH A2108 DC C 6 DA C 7 DT C 8 SITE 3 BC6 9 DC D 11 CRYST1 159.900 159.900 123.770 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008080 0.00000