PDB Short entry for 5FWS HEADER SIGNALING PROTEIN 21-FEB-16 5FWS TITLE WNT MODULATOR KREMEN CRYSTAL FORM I AT 1.90A COMPND MOL_ID: 1; COMPND 2 MOLECULE: KREMEN PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECD, RESIDUES 29-373; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS SIGNALING PROTEIN, WNT, CELL SURFACE, SIGNALLING, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,V.A.JACKSON,E.Y.JONES REVDAT 4 29-JUL-20 5FWS 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-SEP-16 5FWS 1 JRNL REVDAT 2 24-AUG-16 5FWS 1 JRNL REVDAT 1 20-JUL-16 5FWS 0 JRNL AUTH M.ZEBISCH,V.A.JACKSON,Y.ZHAO,E.Y.JONES JRNL TITL STRUCTURE OF THE DUAL-MODE WNT REGULATOR KREMEN1 AND INSIGHT JRNL TITL 2 INTO TERNARY COMPLEX FORMATION WITH LRP6 AND DICKKOPF JRNL REF STRUCTURE V. 24 1599 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27524201 JRNL DOI 10.1016/J.STR.2016.06.020 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 2.00000 REMARK 3 B12 (A**2) : -0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2391 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2069 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3257 ; 2.050 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4751 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 7.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.534 ;23.304 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;16.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;24.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2742 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 1.542 ; 1.737 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1149 ; 1.543 ; 1.736 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1434 ; 2.270 ; 2.597 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1240 ; 2.803 ; 2.206 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3875 -21.7391 -12.4091 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1441 REMARK 3 T33: 0.2299 T12: 0.0275 REMARK 3 T13: -0.0576 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 4.3151 L22: 6.9972 REMARK 3 L33: 2.7249 L12: -1.4044 REMARK 3 L13: 2.0048 L23: 0.0413 REMARK 3 S TENSOR REMARK 3 S11: 0.4069 S12: -0.0264 S13: -0.7453 REMARK 3 S21: 0.0200 S22: -0.1246 S23: -0.5098 REMARK 3 S31: 0.5107 S32: 0.0651 S33: -0.2823 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8600 2.8225 -17.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.1298 REMARK 3 T33: 0.0714 T12: 0.0051 REMARK 3 T13: -0.0047 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.7320 L22: 2.2287 REMARK 3 L33: 3.3412 L12: -0.2591 REMARK 3 L13: -1.1123 L23: -0.5540 REMARK 3 S TENSOR REMARK 3 S11: 0.1432 S12: -0.1896 S13: 0.5954 REMARK 3 S21: -0.0285 S22: -0.1654 S23: 0.0261 REMARK 3 S31: -0.3647 S32: 0.1834 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9328 -8.8023 -11.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.1463 REMARK 3 T33: 0.0571 T12: 0.0401 REMARK 3 T13: 0.0112 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 5.5471 L22: 1.2831 REMARK 3 L33: 2.8244 L12: 0.0547 REMARK 3 L13: 0.7931 L23: 0.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0758 S13: -0.4950 REMARK 3 S21: 0.0273 S22: 0.1147 S23: -0.0211 REMARK 3 S31: 0.2208 S32: -0.0309 S33: -0.1190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1290066229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 5 %V/V ISO REMARK 280 -PROPANOL, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.79667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.59333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.59333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.79667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 ILE A -8 REMARK 465 LEU A -7 REMARK 465 PRO A -6 REMARK 465 SER A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 CYS A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 HIS A 100 REMARK 465 GLU A 101 REMARK 465 ASP A 102 REMARK 465 GLU A 323 REMARK 465 GLU A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 GLU A 327 REMARK 465 ASN A 328 REMARK 465 LEU A 329 REMARK 465 TYR A 330 REMARK 465 PHE A 331 REMARK 465 GLN A 332 REMARK 465 GLY A 333 REMARK 465 GLY A 334 REMARK 465 SER A 335 REMARK 465 LEU A 336 REMARK 465 PRO A 337 REMARK 465 GLN A 338 REMARK 465 GLU A 339 REMARK 465 ARG A 340 REMARK 465 PRO A 341 REMARK 465 ALA A 342 REMARK 465 VAL A 343 REMARK 465 ASN A 344 REMARK 465 GLN A 345 REMARK 465 THR A 346 REMARK 465 VAL A 347 REMARK 465 ALA A 348 REMARK 465 GLU A 349 REMARK 465 VAL A 350 REMARK 465 ILE A 351 REMARK 465 THR A 352 REMARK 465 GLU A 353 REMARK 465 GLN A 354 REMARK 465 ALA A 355 REMARK 465 ASN A 356 REMARK 465 LEU A 357 REMARK 465 SER A 358 REMARK 465 VAL A 359 REMARK 465 SER A 360 REMARK 465 ALA A 361 REMARK 465 ALA A 362 REMARK 465 ARG A 363 REMARK 465 SER A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 VAL A 367 REMARK 465 LEU A 368 REMARK 465 TYR A 369 REMARK 465 VAL A 370 REMARK 465 ILE A 371 REMARK 465 THR A 372 REMARK 465 THR A 373 REMARK 465 SER A 374 REMARK 465 PRO A 375 REMARK 465 SER A 376 REMARK 465 HIS A 377 REMARK 465 PRO A 378 REMARK 465 PRO A 379 REMARK 465 GLN A 380 REMARK 465 THR A 381 REMARK 465 VAL A 382 REMARK 465 PRO A 383 REMARK 465 GLY A 384 REMARK 465 THR A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 305 CB SER A 305 OG -0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 174 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU A 206 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 53.64 -91.10 REMARK 500 TYR A 71 63.55 -119.14 REMARK 500 PRO A 72 176.84 -54.15 REMARK 500 ARG A 155 32.68 70.84 REMARK 500 ASP A 174 48.32 -95.26 REMARK 500 ASP A 229 -1.83 76.68 REMARK 500 SER A 286 99.69 -160.32 REMARK 500 ILE A 308 -84.07 -110.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1327 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 263 OD2 REMARK 620 2 ASP A 266 OD2 89.3 REMARK 620 3 ASP A 266 OD1 99.8 53.8 REMARK 620 4 ASP A 306 OD1 73.7 130.0 82.7 REMARK 620 5 ASN A 309 O 86.7 99.2 151.7 125.4 REMARK 620 6 HOH A2069 O 148.7 120.1 90.7 78.6 97.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FWT RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWU RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWV RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWW RELATED DB: PDB REMARK 900 WNT SIGNALLING TERNARY COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 A CDNA TEMPLETE CORRESPONDING TO ISOFORM 3 WAS USED DURING CLONING DBREF 5FWS A 29 384 UNP Q96MU8 KREM1_HUMAN 29 373 SEQADV 5FWS MET A -10 UNP Q96MU8 INITIATING METHIONINE SEQADV 5FWS GLY A -9 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS ILE A -8 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A -7 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A -6 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS SER A -5 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A -4 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A -3 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS MET A -2 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A -1 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS ALA A 0 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 1 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 2 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS SER A 3 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 4 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS VAL A 5 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS SER A 6 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 7 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 8 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS SER A 9 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS VAL A 10 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 11 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 12 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS MET A 13 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A 14 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS CYS A 15 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS VAL A 16 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS ALA A 17 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLU A 18 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS THR A 19 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A 20 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS ALA A 21 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A 22 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS SER A 23 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A 24 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A 25 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS LEU A 26 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A 27 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS PRO A 28 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS GLY A 325 UNP Q96MU8 INSERTION SEQADV 5FWS SER A 326 UNP Q96MU8 INSERTION SEQADV 5FWS GLU A 327 UNP Q96MU8 INSERTION SEQADV 5FWS ASN A 328 UNP Q96MU8 INSERTION SEQADV 5FWS LEU A 329 UNP Q96MU8 INSERTION SEQADV 5FWS TYR A 330 UNP Q96MU8 INSERTION SEQADV 5FWS PHE A 331 UNP Q96MU8 INSERTION SEQADV 5FWS GLN A 332 UNP Q96MU8 INSERTION SEQADV 5FWS GLY A 333 UNP Q96MU8 INSERTION SEQADV 5FWS GLY A 334 UNP Q96MU8 INSERTION SEQADV 5FWS SER A 335 UNP Q96MU8 INSERTION SEQADV 5FWS THR A 385 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 386 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 387 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 388 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 389 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 390 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 391 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 392 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 393 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 394 UNP Q96MU8 EXPRESSION TAG SEQADV 5FWS HIS A 395 UNP Q96MU8 EXPRESSION TAG SEQRES 1 A 406 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 A 406 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 A 406 VAL ALA GLU THR GLY ALA PRO SER PRO GLY LEU GLY PRO SEQRES 4 A 406 GLY PRO GLU CYS PHE THR ALA ASN GLY ALA ASP TYR ARG SEQRES 5 A 406 GLY THR GLN ASN TRP THR ALA LEU GLN GLY GLY LYS PRO SEQRES 6 A 406 CYS LEU PHE TRP ASN GLU THR PHE GLN HIS PRO TYR ASN SEQRES 7 A 406 THR LEU LYS TYR PRO ASN GLY GLU GLY GLY LEU GLY GLU SEQRES 8 A 406 HIS ASN TYR CYS ARG ASN PRO ASP GLY ASP VAL SER PRO SEQRES 9 A 406 TRP CYS TYR VAL ALA GLU HIS GLU ASP GLY VAL TYR TRP SEQRES 10 A 406 LYS TYR CYS GLU ILE PRO ALA CYS GLN MET PRO GLY ASN SEQRES 11 A 406 LEU GLY CYS TYR LYS ASP HIS GLY ASN PRO PRO PRO LEU SEQRES 12 A 406 THR GLY THR SER LYS THR SER ASN LYS LEU THR ILE GLN SEQRES 13 A 406 THR CYS ILE SER PHE CYS ARG SER GLN ARG PHE LYS PHE SEQRES 14 A 406 ALA GLY MET GLU SER GLY TYR ALA CYS PHE CYS GLY ASN SEQRES 15 A 406 ASN PRO ASP TYR TRP LYS TYR GLY GLU ALA ALA SER THR SEQRES 16 A 406 GLU CYS ASN SER VAL CYS PHE GLY ASP HIS THR GLN PRO SEQRES 17 A 406 CYS GLY GLY ASP GLY ARG ILE ILE LEU PHE ASP THR LEU SEQRES 18 A 406 VAL GLY ALA CYS GLY GLY ASN TYR SER ALA MET SER SER SEQRES 19 A 406 VAL VAL TYR SER PRO ASP PHE PRO ASP THR TYR ALA THR SEQRES 20 A 406 GLY ARG VAL CYS TYR TRP THR ILE ARG VAL PRO GLY ALA SEQRES 21 A 406 SER HIS ILE HIS PHE SER PHE PRO LEU PHE ASP ILE ARG SEQRES 22 A 406 ASP SER ALA ASP MET VAL GLU LEU LEU ASP GLY TYR THR SEQRES 23 A 406 HIS ARG VAL LEU ALA ARG PHE HIS GLY ARG SER ARG PRO SEQRES 24 A 406 PRO LEU SER PHE ASN VAL SER LEU ASP PHE VAL ILE LEU SEQRES 25 A 406 TYR PHE PHE SER ASP ARG ILE ASN GLN ALA GLN GLY PHE SEQRES 26 A 406 ALA VAL LEU TYR GLN ALA VAL LYS GLU GLU GLY SER GLU SEQRES 27 A 406 ASN LEU TYR PHE GLN GLY GLY SER LEU PRO GLN GLU ARG SEQRES 28 A 406 PRO ALA VAL ASN GLN THR VAL ALA GLU VAL ILE THR GLU SEQRES 29 A 406 GLN ALA ASN LEU SER VAL SER ALA ALA ARG SER SER LYS SEQRES 30 A 406 VAL LEU TYR VAL ILE THR THR SER PRO SER HIS PRO PRO SEQRES 31 A 406 GLN THR VAL PRO GLY THR HIS HIS HIS HIS HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS MODRES 5FWS ASN A 45 ASN GLYCOSYLATION SITE MODRES 5FWS ASN A 59 ASN GLYCOSYLATION SITE MODRES 5FWS ASN A 293 ASN GLYCOSYLATION SITE HET SO4 A1323 5 HET NAG A1324 14 HET NAG A1325 14 HET NAG A1326 14 HET CA A1327 1 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION FORMUL 2 SO4 O4 S 2- FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 CA CA 2+ FORMUL 7 HOH *79(H2 O) HELIX 1 1 TYR A 71 LEU A 78 5 8 HELIX 2 2 THR A 143 GLN A 154 1 12 HELIX 3 3 ALA A 182 CYS A 186 5 5 SHEET 1 AA 2 TRP A 94 TYR A 96 0 SHEET 2 AA 2 TRP A 106 TYR A 108 -1 O LYS A 107 N CYS A 95 SHEET 1 AB 5 ASN A 119 LYS A 124 0 SHEET 2 AB 5 ARG A 203 ASP A 208 -1 O ILE A 204 N TYR A 123 SHEET 3 AB 5 PHE A 158 GLU A 162 -1 O ALA A 159 N PHE A 207 SHEET 4 AB 5 ALA A 166 GLY A 170 -1 O ALA A 166 N GLU A 162 SHEET 5 AB 5 THR A 135 THR A 138 -1 O THR A 135 N CYS A 169 SHEET 1 AC 2 VAL A 189 CYS A 190 0 SHEET 2 AC 2 ASP A 193 PRO A 197 -1 N ASP A 193 O CYS A 190 SHEET 1 AD 5 GLY A 216 TYR A 218 0 SHEET 2 AD 5 VAL A 239 ARG A 245 1 O TYR A 241 N GLY A 216 SHEET 3 AD 5 PHE A 298 PHE A 304 -1 O VAL A 299 N ILE A 244 SHEET 4 AD 5 MET A 267 ASP A 272 -1 O MET A 267 N PHE A 304 SHEET 5 AD 5 VAL A 278 HIS A 283 -1 N LEU A 279 O LEU A 270 SHEET 1 AE 4 SER A 222 TYR A 226 0 SHEET 2 AE 4 GLY A 313 VAL A 321 -1 O VAL A 316 N VAL A 225 SHEET 3 AE 4 HIS A 251 ASP A 260 -1 O HIS A 251 N VAL A 321 SHEET 4 AE 4 SER A 291 VAL A 294 -1 O PHE A 292 N PHE A 254 SSBOND 1 CYS A 32 CYS A 114 1555 1555 2.09 SSBOND 2 CYS A 55 CYS A 95 1555 1555 2.04 SSBOND 3 CYS A 84 CYS A 109 1555 1555 2.09 SSBOND 4 CYS A 122 CYS A 186 1555 1555 2.02 SSBOND 5 CYS A 147 CYS A 167 1555 1555 2.06 SSBOND 6 CYS A 151 CYS A 169 1555 1555 2.02 SSBOND 7 CYS A 190 CYS A 198 1555 1555 2.05 SSBOND 8 CYS A 214 CYS A 240 1555 1555 2.14 LINK ND2 ASN A 45 C1 NAG A1324 1555 1555 1.44 LINK ND2 ASN A 59 C1 NAG A1325 1555 1555 1.46 LINK ND2 ASN A 293 C1 NAG A1326 1555 1555 1.46 LINK OD2 ASP A 263 CA CA A1327 1555 1555 2.65 LINK OD2 ASP A 266 CA CA A1327 1555 1555 2.49 LINK OD1 ASP A 266 CA CA A1327 1555 1555 2.55 LINK OD1 ASP A 306 CA CA A1327 1555 1555 2.43 LINK O ASN A 309 CA CA A1327 1555 1555 2.16 LINK CA CA A1327 O HOH A2069 1555 1555 2.46 CISPEP 1 ASN A 128 PRO A 129 0 -0.50 CISPEP 2 PHE A 230 PRO A 231 0 14.16 CRYST1 50.940 50.940 188.390 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019631 0.011334 0.000000 0.00000 SCALE2 0.000000 0.022668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005308 0.00000