PDB Short entry for 5G1X HEADER TRANSFERASE 31-MAR-16 5G1X TITLE CRYSTAL STRUCTURE OF AURORA-A KINASE IN COMPLEX WITH N-MYC COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 122-403; COMPND 5 SYNONYM: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA- COMPND 6 RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, SERINE/ COMPND 7 THREONINE-PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE 6, COMPND 8 SERINE/ THREONINE-PROTEIN KINASE AURORA-A, AURORA-A; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: N-MYC PROTO-ONCOGENE PROTEIN; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 37, BHLHE37, N-MYC; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 OTHER_DETAILS: N-TERMINAL BIOTIN GROUP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30TEV; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, AURORA, AURORA-A, KINASE, N-MYC, MYC, NEUROBLASTOMA EXPDTA X-RAY DIFFRACTION AUTHOR M.W.RICHARDS,S.G.BURGESS,R.BAYLISS REVDAT 4 10-JAN-24 5G1X 1 REMARK LINK REVDAT 3 14-DEC-16 5G1X 1 JRNL REVDAT 2 23-NOV-16 5G1X 1 TITLE REVDAT 1 16-NOV-16 5G1X 0 JRNL AUTH M.RICHARDS,S.BURGESS,E.POON,A.CARSTENSEN,M.EILERS,L.CHESLER, JRNL AUTH 2 R.BAYLISS JRNL TITL STRUCTURAL BASIS OF N-MYC BINDING BY AURORA-A AND ITS JRNL TITL 2 DESTABILIZATION BY KINASE INHIBITORS JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 13726 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27837025 JRNL DOI 10.1073/PNAS.1610626113 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.9997 - 4.1453 1.00 3098 141 0.1650 0.1882 REMARK 3 2 4.1453 - 3.2902 1.00 2953 153 0.1602 0.1607 REMARK 3 3 3.2902 - 2.8743 1.00 2918 150 0.1797 0.1825 REMARK 3 4 2.8743 - 2.6115 1.00 2957 132 0.1877 0.2195 REMARK 3 5 2.6115 - 2.4243 1.00 2859 184 0.1875 0.2063 REMARK 3 6 2.4243 - 2.2814 1.00 2917 128 0.1843 0.2175 REMARK 3 7 2.2814 - 2.1671 1.00 2926 113 0.1754 0.2263 REMARK 3 8 2.1671 - 2.0728 1.00 2888 153 0.1789 0.2217 REMARK 3 9 2.0728 - 1.9930 1.00 2922 139 0.1798 0.1944 REMARK 3 10 1.9930 - 1.9242 1.00 2853 126 0.1872 0.2273 REMARK 3 11 1.9242 - 1.8640 1.00 2926 145 0.1897 0.2157 REMARK 3 12 1.8640 - 1.8107 1.00 2844 156 0.1982 0.2218 REMARK 3 13 1.8107 - 1.7631 1.00 2837 157 0.2099 0.2319 REMARK 3 14 1.7631 - 1.7200 1.00 2912 133 0.2212 0.2414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2456 REMARK 3 ANGLE : 1.043 3344 REMARK 3 CHIRALITY : 0.044 363 REMARK 3 PLANARITY : 0.007 422 REMARK 3 DIHEDRAL : 13.746 900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 74.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4CEG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE PH 9.0, 20% PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.73667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.73667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.47333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 MET A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 PRO A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 ALA A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 SER B 27 REMARK 465 PHE B 28 REMARK 465 TYR B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 ASP B 34 REMARK 465 PHE B 35 REMARK 465 TYR B 36 REMARK 465 PHE B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 39 REMARK 465 PRO B 40 REMARK 465 ASP B 41 REMARK 465 SER B 42 REMARK 465 THR B 43 REMARK 465 PRO B 44 REMARK 465 PRO B 45 REMARK 465 GLY B 46 REMARK 465 GLU B 47 REMARK 465 ASP B 48 REMARK 465 ILE B 49 REMARK 465 TRP B 50 REMARK 465 LYS B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 GLU B 54 REMARK 465 LEU B 55 REMARK 465 LEU B 56 REMARK 465 PRO B 57 REMARK 465 THR B 58 REMARK 465 PRO B 59 REMARK 465 PRO B 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 126 N CA CB CG CD NE CZ REMARK 470 ARG A 126 NH1 NH2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 GLU A 131 CD OE1 OE2 REMARK 470 LYS A 141 CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 LYS A 224 CD CE NZ REMARK 470 ARG A 251 NE CZ NH1 NH2 REMARK 470 SER A 283 OG REMARK 470 GLU A 308 CD OE1 OE2 REMARK 470 LYS A 326 CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 389 CE NZ REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 GLU B 86 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2185 O HOH A 2187 1.80 REMARK 500 O HOH A 2036 O HOH A 2116 1.83 REMARK 500 O HOH A 2185 O HOH A 2186 1.87 REMARK 500 O HOH A 2074 O HOH A 2117 2.00 REMARK 500 O HOH A 2143 O HOH A 2145 2.07 REMARK 500 O HOH A 2074 O HOH A 2187 2.09 REMARK 500 O HOH A 2005 O HOH A 2038 2.11 REMARK 500 O HOH A 2026 O HOH A 2186 2.13 REMARK 500 O HOH A 2036 O HOH A 2185 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2023 O HOH A 2144 4656 0.20 REMARK 500 O HOH A 2007 O HOH A 2145 4656 2.09 REMARK 500 OD1 ASN A 332 O HOH A 2033 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -158.42 -127.31 REMARK 500 SER A 226 -54.59 68.53 REMARK 500 ASP A 256 55.90 -149.63 REMARK 500 ASP A 256 44.69 -149.63 REMARK 500 ILE A 257 47.47 -98.48 REMARK 500 ASP A 274 76.50 52.68 REMARK 500 ASP A 307 -157.72 -139.64 REMARK 500 LEU A 364 56.99 -94.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 257 19.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2093 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2094 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B2007 DISTANCE = 7.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1392 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 261 OD1 REMARK 620 2 ASP A 274 OD2 87.5 REMARK 620 3 ADP A1390 O2A 93.7 95.6 REMARK 620 4 ADP A1390 O3B 176.3 95.9 87.4 REMARK 620 5 HOH A2112 O 85.6 171.3 90.2 90.9 REMARK 620 6 HOH A2114 O 93.1 82.3 172.8 86.0 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1391 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD1 REMARK 620 2 ASP A 274 OD2 51.0 REMARK 620 3 ADP A1390 O2B 93.8 79.3 REMARK 620 4 HOH A2026 O 92.3 137.4 83.1 REMARK 620 5 HOH A2116 O 87.6 104.3 176.1 93.3 REMARK 620 6 HOH A2117 O 122.2 75.9 97.4 145.2 84.8 REMARK 620 7 HOH A2185 O 157.0 149.9 99.9 71.3 77.6 74.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1392 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES PRESENT ARE 122-403 OF AURORA-A. GA AT N- REMARK 999 TERMINUS REMAINS FROM A PROTEASE CLEAVAGE SEQUENCE. C290 REMARK 999 AND C393 ARE MUTATED TO ALANINE. REMARK 999 RESIDUES PRESENT ARE 28-89 WITH A SERINE RESIDUE APPENDED REMARK 999 AT THE N-TERMINUS. DBREF 5G1X A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 5G1X B 28 89 UNP P04198 MYCN_HUMAN 28 89 SEQADV 5G1X GLY A 119 UNP O14965 EXPRESSION TAG SEQADV 5G1X ALA A 120 UNP O14965 EXPRESSION TAG SEQADV 5G1X MET A 121 UNP O14965 EXPRESSION TAG SEQADV 5G1X ALA A 290 UNP O14965 CYS 290 ENGINEERED MUTATION SEQADV 5G1X ALA A 393 UNP O14965 CYS 393 ENGINEERED MUTATION SEQADV 5G1X SER B 27 UNP P04198 EXPRESSION TAG SEQRES 1 A 285 GLY ALA MET GLU SER LYS LYS ARG GLN TRP ALA LEU GLU SEQRES 2 A 285 ASP PHE GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE SEQRES 3 A 285 GLY ASN VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE SEQRES 4 A 285 ILE LEU ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU SEQRES 5 A 285 LYS ALA GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU SEQRES 6 A 285 ILE GLN SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU SEQRES 7 A 285 TYR GLY TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE SEQRES 8 A 285 LEU GLU TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU SEQRES 9 A 285 GLN LYS LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR SEQRES 10 A 285 TYR ILE THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SEQRES 11 A 285 SER LYS ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN SEQRES 12 A 285 LEU LEU LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP SEQRES 13 A 285 PHE GLY TRP SER VAL HIS ALA PRO SER SER ARG ARG THR SEQRES 14 A 285 TPO LEU ALA GLY THR LEU ASP TYR LEU PRO PRO GLU MET SEQRES 15 A 285 ILE GLU GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SEQRES 16 A 285 SER LEU GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS SEQRES 17 A 285 PRO PRO PHE GLU ALA ASN THR TYR GLN GLU THR TYR LYS SEQRES 18 A 285 ARG ILE SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL SEQRES 19 A 285 THR GLU GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS SEQRES 20 A 285 HIS ASN PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU SEQRES 21 A 285 GLU HIS PRO TRP ILE THR ALA ASN SER SER LYS PRO SER SEQRES 22 A 285 ASN ALA GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 63 SER PHE TYR PRO ASP GLU ASP ASP PHE TYR PHE GLY GLY SEQRES 2 B 63 PRO ASP SER THR PRO PRO GLY GLU ASP ILE TRP LYS LYS SEQRES 3 B 63 PHE GLU LEU LEU PRO THR PRO PRO LEU SER PRO SER ARG SEQRES 4 B 63 GLY PHE ALA GLU HIS SER SER GLU PRO PRO SER TRP VAL SEQRES 5 B 63 THR GLU MET LEU LEU GLU ASN GLU LEU TRP GLY MODRES 5G1X TPO A 288 THR PHOSPHOTHREONINE HET TPO A 288 11 HET ADP A1390 27 HET MG A1391 1 HET MG A1392 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *197(H2 O) HELIX 1 1 ALA A 129 GLU A 131 5 3 HELIX 2 2 LYS A 166 GLY A 173 1 8 HELIX 3 3 VAL A 174 SER A 186 1 13 HELIX 4 4 THR A 217 SER A 226 1 10 HELIX 5 5 ASP A 229 LYS A 250 1 22 HELIX 6 6 LYS A 258 GLU A 260 5 3 HELIX 7 7 THR A 292 LEU A 296 5 5 HELIX 8 8 PRO A 297 GLU A 302 1 6 HELIX 9 9 GLU A 308 GLY A 325 1 18 HELIX 10 10 THR A 333 ARG A 343 1 11 HELIX 11 11 THR A 353 LEU A 364 1 12 HELIX 12 12 ASN A 367 ARG A 371 5 5 HELIX 13 13 MET A 373 GLU A 379 1 7 HELIX 14 14 HIS A 380 SER A 387 1 8 HELIX 15 15 ALA B 68 SER B 72 5 5 HELIX 16 16 PRO B 75 GLY B 89 1 15 SHEET 1 AA 5 PHE A 133 LYS A 141 0 SHEET 2 AA 5 ASN A 146 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA 5 ILE A 158 PHE A 165 -1 O LEU A 159 N ALA A 150 SHEET 4 AA 5 ARG A 205 GLU A 211 -1 O VAL A 206 N LEU A 164 SHEET 5 AA 5 LEU A 196 HIS A 201 -1 N TYR A 197 O ILE A 209 SHEET 1 AB 2 VAL A 252 ILE A 253 0 SHEET 2 AB 2 VAL A 279 HIS A 280 -1 O VAL A 279 N ILE A 253 SHEET 1 AC 2 LEU A 262 LEU A 264 0 SHEET 2 AC 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 LINK C THR A 287 N TPO A 288 1555 1555 1.33 LINK C TPO A 288 N LEU A 289 1555 1555 1.34 LINK OD1 ASN A 261 MG MG A1392 1555 1555 2.12 LINK OD1 ASP A 274 MG MG A1391 1555 1555 2.08 LINK OD2 ASP A 274 MG MG A1391 1555 1555 2.80 LINK OD2 ASP A 274 MG MG A1392 1555 1555 1.84 LINK O2B ADP A1390 MG MG A1391 1555 1555 2.01 LINK O2A ADP A1390 MG MG A1392 1555 1555 2.04 LINK O3B ADP A1390 MG MG A1392 1555 1555 2.04 LINK MG MG A1391 O HOH A2026 1555 1555 2.30 LINK MG MG A1391 O HOH A2116 1555 1555 2.12 LINK MG MG A1391 O HOH A2117 1555 1555 2.16 LINK MG MG A1391 O HOH A2185 1555 1555 2.22 LINK MG MG A1392 O HOH A2112 1555 1555 2.18 LINK MG MG A1392 O HOH A2114 1555 1555 2.05 SITE 1 AC1 26 GLY A 140 LYS A 141 GLY A 142 LYS A 143 SITE 2 AC1 26 VAL A 147 ALA A 160 LYS A 162 LEU A 194 SITE 3 AC1 26 GLU A 211 ALA A 213 THR A 217 GLU A 260 SITE 4 AC1 26 ASN A 261 LEU A 263 ASP A 274 MG A1391 SITE 5 AC1 26 MG A1392 HOH A2012 HOH A2017 HOH A2026 SITE 6 AC1 26 HOH A2111 HOH A2112 HOH A2114 HOH A2184 SITE 7 AC1 26 HOH A2188 HOH A2189 SITE 1 AC2 7 ASP A 274 ADP A1390 HOH A2026 HOH A2036 SITE 2 AC2 7 HOH A2116 HOH A2117 HOH A2185 SITE 1 AC3 5 ASN A 261 ASP A 274 ADP A1390 HOH A2112 SITE 2 AC3 5 HOH A2114 CRYST1 86.520 86.520 92.210 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011558 0.006673 0.000000 0.00000 SCALE2 0.000000 0.013346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000