PDB Short entry for 5GKI
HEADER    HYDROLASE/DNA                           04-JUL-16   5GKI              
TITLE     STRUCTURE OF ENDOMS-DSDNA3 COMPLEX                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ENDONUCLEASE ENDOMS;                                       
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: ENDONUCLEASE NUCS;                                          
COMPND   5 EC: 3.1.-.-;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-D(*GP*CP*CP*TP*AP*GP*GP*TP*CP*CP*CP*GP*TP*CP*C)-   
COMPND  10 3');                                                                 
COMPND  11 CHAIN: C;                                                            
COMPND  12 ENGINEERED: YES;                                                     
COMPND  13 MOL_ID: 3;                                                           
COMPND  14 MOLECULE: DNA (5'-D(*GP*GP*AP*CP*GP*GP*GP*GP*CP*CP*TP*AP*GP*GP*C)-   
COMPND  15 3');                                                                 
COMPND  16 CHAIN: D;                                                            
COMPND  17 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1;                 
SOURCE   3 ORGANISM_TAXID: 69014;                                               
SOURCE   4 STRAIN: KOD1;                                                        
SOURCE   5 GENE: TK1898;                                                        
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  11 ORGANISM_TAXID: 32630;                                               
SOURCE  12 MOL_ID: 3;                                                           
SOURCE  13 SYNTHETIC: YES;                                                      
SOURCE  14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  15 ORGANISM_TAXID: 32630                                                
KEYWDS    ENDONUCLEASE, DNA COMPLEX, HYDROLASE-DNA COMPLEX                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.NAKAE,A.HIJIKATA,T.TSUJI,K.YONEZAWA,K.KOUYAMA,K.MAYANAGI,S.ISHINO,  
AUTHOR   2 Y.ISHINO,T.SHIRAI                                                    
REVDAT   3   26-FEB-20 5GKI    1       JRNL   REMARK                            
REVDAT   2   16-NOV-16 5GKI    1       JRNL                                     
REVDAT   1   02-NOV-16 5GKI    0                                                
JRNL        AUTH   S.NAKAE,A.HIJIKATA,T.TSUJI,K.YONEZAWA,K.I.KOUYAMA,           
JRNL        AUTH 2 K.MAYANAGI,S.ISHINO,Y.ISHINO,T.SHIRAI                        
JRNL        TITL   STRUCTURE OF THE ENDOMS-DNA COMPLEX AS MISMATCH RESTRICTION  
JRNL        TITL 2 ENDONUCLEASE                                                 
JRNL        REF    STRUCTURE                     V.  24  1960 2016              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   27773688                                                     
JRNL        DOI    10.1016/J.STR.2016.09.005                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.9_1692                                      
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 24.72                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 96.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 22831                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.186                           
REMARK   3   R VALUE            (WORKING SET) : 0.182                           
REMARK   3   FREE R VALUE                     : 0.255                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.090                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1162                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 24.7247 -  5.7784    0.99     3045   138  0.1957 0.2612        
REMARK   3     2  5.7784 -  4.5961    0.99     2834   143  0.1482 0.2179        
REMARK   3     3  4.5961 -  4.0179    0.99     2776   158  0.1313 0.1881        
REMARK   3     4  4.0179 -  3.6518    0.98     2705   159  0.1569 0.2176        
REMARK   3     5  3.6518 -  3.3908    0.97     2658   163  0.1700 0.2746        
REMARK   3     6  3.3908 -  3.1913    0.96     2634   131  0.2039 0.2765        
REMARK   3     7  3.1913 -  3.0318    0.93     2550   145  0.2567 0.3214        
REMARK   3     8  3.0318 -  2.9000    0.91     2467   125  0.3296 0.4544        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.420            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.770           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 29.38                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           5252                                  
REMARK   3   ANGLE     :  1.281           7340                                  
REMARK   3   CHIRALITY :  0.046            834                                  
REMARK   3   PLANARITY :  0.007            734                                  
REMARK   3   DIHEDRAL  : 22.406           2120                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5GKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-16.                  
REMARK 100 THE DEPOSITION ID IS D_1300000899.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 09-DEC-14                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL38B1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0000                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : MOSFLM                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 23761                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 24.720                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.8                               
REMARK 200  DATA REDUNDANCY                : 7.200                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 16.8000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.06                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.00                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 9.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 5BSL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 68.58                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M CALCIUM ACETATE, 80 MM SODIUM     
REMARK 280  CACODYLATE, 14.4%(W/V) PEG8000, 20%(W/V) GLYCEROL, PH 6.5, VAPOR    
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 291K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290       7555   Y,X,-Z+1/3                                              
REMARK 290       8555   X-Y,-Y,-Z                                               
REMARK 290       9555   -X,-X+Y,-Z+2/3                                          
REMARK 290      10555   -Y,-X,-Z+5/6                                            
REMARK 290      11555   -X+Y,Y,-Z+1/2                                           
REMARK 290      12555   X,X-Y,-Z+1/6                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      135.11667            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000      270.23333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      202.67500            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000      337.79167            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       67.55833            
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000      135.11667            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000      270.23333            
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000      337.79167            
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000      202.67500            
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       67.55833            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2                         
REMARK 350 SURFACE AREA OF THE COMPLEX: 22690 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ASP A   241                                                      
REMARK 465     SER A   242                                                      
REMARK 465     LYS A   243                                                      
REMARK 465     LYS A   244                                                      
REMARK 465     LYS A   245                                                      
REMARK 465     GLY A   246                                                      
REMARK 465     ARG A   247                                                      
REMARK 465     GLN A   248                                                      
REMARK 465     LYS A   249                                                      
REMARK 465     THR A   250                                                      
REMARK 465     LEU A   251                                                      
REMARK 465     PHE A   252                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ASP B   241                                                      
REMARK 465     SER B   242                                                      
REMARK 465     LYS B   243                                                      
REMARK 465     LYS B   244                                                      
REMARK 465     LYS B   245                                                      
REMARK 465     GLY B   246                                                      
REMARK 465     ARG B   247                                                      
REMARK 465     GLN B   248                                                      
REMARK 465     LYS B   249                                                      
REMARK 465     THR B   250                                                      
REMARK 465     LEU B   251                                                      
REMARK 465     PHE B   252                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DA C   5   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500     DA C   5   O4' -  C1' -  N9  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DT C  13   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DG D   5   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DG D   5   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A   3     -157.41   -155.34                                   
REMARK 500    ALA A  45     -169.23   -126.67                                   
REMARK 500    LYS A  71     -165.77     56.99                                   
REMARK 500    LYS A 100       78.45     51.75                                   
REMARK 500    ILE A 146      -62.88    -91.48                                   
REMARK 500    LEU A 153      -57.64   -123.43                                   
REMARK 500    SER B  11       62.00     32.11                                   
REMARK 500    LYS B  71     -159.96     52.43                                   
REMARK 500    ARG B  72      -55.71   -122.84                                   
REMARK 500    LYS B 100       66.79     63.32                                   
REMARK 500    LEU B 153      -58.10   -123.42                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 301  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 179   OE1                                                    
REMARK 620 2 GLU A 179   OE2  52.4                                              
REMARK 620 3  DG C   6   OP1  82.2 134.4                                        
REMARK 620 4  DG D   6   OP1  82.7 135.1   3.2                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG B 301  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU B 179   OE1                                                    
REMARK 620 2 GLU B 179   OE2  61.4                                              
REMARK 620 3  DG C   6   OP1  76.9  97.8                                        
REMARK 620 4  DG D   6   OP1  76.8 102.4   5.6                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 101                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 102                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 103                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5GKE   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5GKF   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5GKG   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5GKH   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5GKJ   RELATED DB: PDB                                   
DBREF  5GKI A    1   252  UNP    Q5JER9   NUCS_THEKO       1    252             
DBREF  5GKI B    1   252  UNP    Q5JER9   NUCS_THEKO       1    252             
DBREF  5GKI C    1    15  PDB    5GKI     5GKI             1     15             
DBREF  5GKI D    1    15  PDB    5GKI     5GKI             1     15             
SEQADV 5GKI ALA A  165  UNP  Q5JER9    ASP   165 ENGINEERED MUTATION            
SEQADV 5GKI ALA B  165  UNP  Q5JER9    ASP   165 ENGINEERED MUTATION            
SEQRES   1 A  252  MET SER LYS ASP LYS VAL THR VAL ILE THR SER PRO SER          
SEQRES   2 A  252  THR GLU GLU LEU VAL SER LEU VAL ASN SER ALA LEU LEU          
SEQRES   3 A  252  GLU GLU ALA MET LEU THR ILE PHE ALA ARG CYS LYS VAL          
SEQRES   4 A  252  HIS TYR ASP GLY ARG ALA LYS SER GLU LEU GLY SER GLY          
SEQRES   5 A  252  ASP ARG VAL ILE ILE VAL LYS PRO ASP GLY SER PHE LEU          
SEQRES   6 A  252  ILE HIS GLN SER LYS LYS ARG GLU PRO VAL ASN TRP GLN          
SEQRES   7 A  252  PRO PRO GLY SER ARG VAL ARG LEU GLU LEU ARG GLU ASN          
SEQRES   8 A  252  PRO VAL LEU VAL SER ILE ARG ARG LYS PRO ARG GLU THR          
SEQRES   9 A  252  LEU GLU VAL GLU LEU GLU GLU VAL TYR MET VAL SER VAL          
SEQRES  10 A  252  PHE ARG ALA GLU ASP TYR GLU GLU LEU ALA LEU THR GLY          
SEQRES  11 A  252  SER GLU ALA GLU MET ALA GLU LEU ILE PHE GLU ASN PRO          
SEQRES  12 A  252  GLU VAL ILE GLU PRO GLY PHE LYS PRO LEU PHE ARG GLU          
SEQRES  13 A  252  LYS ALA ILE GLY THR GLY ILE VAL ALA VAL LEU GLY ARG          
SEQRES  14 A  252  ASP SER ASP GLY ASN ILE VAL VAL LEU GLU LEU LYS ARG          
SEQRES  15 A  252  ARG ARG ALA GLU LEU HIS ALA VAL ARG GLN LEU LYS SER          
SEQRES  16 A  252  TYR VAL GLU ILE LEU ARG GLU GLU TYR GLY ASP LYS VAL          
SEQRES  17 A  252  ARG GLY ILE LEU VAL ALA PRO SER LEU THR SER GLY ALA          
SEQRES  18 A  252  LYS ARG LEU LEU GLU LYS GLU GLY LEU GLU PHE ARG LYS          
SEQRES  19 A  252  LEU GLU PRO PRO LYS ARG ASP SER LYS LYS LYS GLY ARG          
SEQRES  20 A  252  GLN LYS THR LEU PHE                                          
SEQRES   1 B  252  MET SER LYS ASP LYS VAL THR VAL ILE THR SER PRO SER          
SEQRES   2 B  252  THR GLU GLU LEU VAL SER LEU VAL ASN SER ALA LEU LEU          
SEQRES   3 B  252  GLU GLU ALA MET LEU THR ILE PHE ALA ARG CYS LYS VAL          
SEQRES   4 B  252  HIS TYR ASP GLY ARG ALA LYS SER GLU LEU GLY SER GLY          
SEQRES   5 B  252  ASP ARG VAL ILE ILE VAL LYS PRO ASP GLY SER PHE LEU          
SEQRES   6 B  252  ILE HIS GLN SER LYS LYS ARG GLU PRO VAL ASN TRP GLN          
SEQRES   7 B  252  PRO PRO GLY SER ARG VAL ARG LEU GLU LEU ARG GLU ASN          
SEQRES   8 B  252  PRO VAL LEU VAL SER ILE ARG ARG LYS PRO ARG GLU THR          
SEQRES   9 B  252  LEU GLU VAL GLU LEU GLU GLU VAL TYR MET VAL SER VAL          
SEQRES  10 B  252  PHE ARG ALA GLU ASP TYR GLU GLU LEU ALA LEU THR GLY          
SEQRES  11 B  252  SER GLU ALA GLU MET ALA GLU LEU ILE PHE GLU ASN PRO          
SEQRES  12 B  252  GLU VAL ILE GLU PRO GLY PHE LYS PRO LEU PHE ARG GLU          
SEQRES  13 B  252  LYS ALA ILE GLY THR GLY ILE VAL ALA VAL LEU GLY ARG          
SEQRES  14 B  252  ASP SER ASP GLY ASN ILE VAL VAL LEU GLU LEU LYS ARG          
SEQRES  15 B  252  ARG ARG ALA GLU LEU HIS ALA VAL ARG GLN LEU LYS SER          
SEQRES  16 B  252  TYR VAL GLU ILE LEU ARG GLU GLU TYR GLY ASP LYS VAL          
SEQRES  17 B  252  ARG GLY ILE LEU VAL ALA PRO SER LEU THR SER GLY ALA          
SEQRES  18 B  252  LYS ARG LEU LEU GLU LYS GLU GLY LEU GLU PHE ARG LYS          
SEQRES  19 B  252  LEU GLU PRO PRO LYS ARG ASP SER LYS LYS LYS GLY ARG          
SEQRES  20 B  252  GLN LYS THR LEU PHE                                          
SEQRES   1 C   15   DG  DC  DC  DT  DA  DG  DG  DT  DC  DC  DC  DG  DT          
SEQRES   2 C   15   DC  DC                                                      
SEQRES   1 D   15   DG  DG  DA  DC  DG  DG  DG  DG  DC  DC  DT  DA  DG          
SEQRES   2 D   15   DG  DC                                                      
HET     MG  A 301       1                                                       
HET    MPD  A 302       8                                                       
HET     MG  B 301       1                                                       
HET    MPD  C 101       8                                                       
HET    MPD  C 102       8                                                       
HET    MPD  C 103       8                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     MPD (4S)-2-METHYL-2,4-PENTANEDIOL                                    
FORMUL   5   MG    2(MG 2+)                                                     
FORMUL   6  MPD    4(C6 H14 O2)                                                 
FORMUL  11  HOH   *21(H2 O)                                                     
HELIX    1 AA1 SER A   13  GLU A   28  1                                  16    
HELIX    2 AA2 SER A  131  ASN A  142  1                                  12    
HELIX    3 AA3 PRO A  143  ILE A  146  5                                   4    
HELIX    4 AA4 GLU A  186  GLY A  205  1                                  20    
HELIX    5 AA5 THR A  218  GLU A  228  1                                  11    
HELIX    6 AA6 SER B   13  GLU B   28  1                                  16    
HELIX    7 AA7 SER B  131  ASN B  142  1                                  12    
HELIX    8 AA8 PRO B  143  ILE B  146  5                                   4    
HELIX    9 AA9 GLU B  186  GLY B  205  1                                  20    
HELIX   10 AB1 ASP B  206  VAL B  208  5                                   3    
HELIX   11 AB2 THR B  218  GLU B  228  1                                  11    
SHEET    1 AA1 6 VAL A   6  THR A  10  0                                        
SHEET    2 AA1 6 GLU A 103  PHE A 118 -1  O  VAL A 115   N  ILE A   9           
SHEET    3 AA1 6 MET A  30  ASP A  42 -1  N  ASP A  42   O  THR A 104           
SHEET    4 AA1 6 LYS A  46  VAL A  58 -1  O  ILE A  56   N  ILE A  33           
SHEET    5 AA1 6 PRO A  92  ARG A  98  0                                        
SHEET    6 AA1 6 ARG A  83  LEU A  88 -1  N  ARG A  85   O  VAL A  95           
SHEET    1 AA2 6 ASN A  76  GLN A  78  0                                        
SHEET    2 AA2 6 PHE A  64  HIS A  67 -1  N  PHE A  64   O  GLN A  78           
SHEET    3 AA2 6 LYS A  46  VAL A  58 -1  N  ILE A  57   O  LEU A  65           
SHEET    4 AA2 6 MET A  30  ASP A  42 -1  N  ILE A  33   O  ILE A  56           
SHEET    5 AA2 6 GLU A 103  PHE A 118 -1  O  THR A 104   N  ASP A  42           
SHEET    6 AA2 6 ALA B 127  THR B 129  0                                        
SHEET    1 AA3 6 ALA A 127  THR A 129  0                                        
SHEET    2 AA3 6 LYS B  46  VAL B  58 -1  O  LYS B  46   N  THR A 129           
SHEET    3 AA3 6 MET B  30  ASP B  42 -1  N  CYS B  37   O  GLY B  52           
SHEET    4 AA3 6 GLU B 103  PHE B 118 -1  O  THR B 104   N  ASP B  42           
SHEET    5 AA3 6 PHE B  64  HIS B  67  0                                        
SHEET    6 AA3 6 ASN B  76  GLN B  78 -1  O  GLN B  78   N  PHE B  64           
SHEET    1 AA4 6 VAL B   6  THR B  10  0                                        
SHEET    2 AA4 6 GLU B 103  PHE B 118 -1  O  VAL B 115   N  ILE B   9           
SHEET    3 AA4 6 MET B  30  ASP B  42 -1  N  ASP B  42   O  THR B 104           
SHEET    4 AA4 6 LYS B  46  VAL B  58 -1  O  GLY B  52   N  CYS B  37           
SHEET    5 AA4 6 PRO B  92  ARG B  98  0                                        
SHEET    6 AA4 6 ARG B  83  LEU B  88 -1  N  ARG B  83   O  ILE B  97           
SHEET    1 AA5 5 LYS A 151  ALA A 158  0                                        
SHEET    2 AA5 5 ILE A 163  ARG A 169 -1  O  ARG A 169   N  LYS A 151           
SHEET    3 AA5 5 ILE A 175  LEU A 180 -1  O  VAL A 176   N  GLY A 168           
SHEET    4 AA5 5 VAL A 208  ALA A 214  1  O  VAL A 213   N  GLU A 179           
SHEET    5 AA5 5 GLU A 231  LYS A 234  1  O  GLU A 231   N  LEU A 212           
SHEET    1 AA6 5 LYS B 151  ALA B 158  0                                        
SHEET    2 AA6 5 ILE B 163  ARG B 169 -1  O  ARG B 169   N  LYS B 151           
SHEET    3 AA6 5 ILE B 175  LEU B 180 -1  O  VAL B 176   N  GLY B 168           
SHEET    4 AA6 5 ARG B 209  ALA B 214  1  O  ILE B 211   N  VAL B 177           
SHEET    5 AA6 5 GLU B 231  LYS B 234  1  O  GLU B 231   N  LEU B 212           
LINK         OE1 GLU A 179                MG    MG A 301     1555   1555  2.15  
LINK         OE2 GLU A 179                MG    MG A 301     1555   1555  2.67  
LINK         OE1 GLU B 179                MG    MG B 301     1555   1555  2.29  
LINK         OE2 GLU B 179                MG    MG B 301     1555   1555  1.93  
LINK         OP1A DG C   6                MG    MG B 301     1555   1555  2.17  
LINK         OP1B DG C   6                MG    MG A 301     1555   1555  2.03  
LINK         OP1A DG D   6                MG    MG A 301     1555   1555  2.02  
LINK         OP1B DG D   6                MG    MG B 301     1555   1555  2.13  
CISPEP   1 LYS A  100    PRO A  101          0        -3.79                     
CISPEP   2 LYS B  100    PRO B  101          0        -3.75                     
SITE     1 AC1  7 GLU A 179  LYS A 181  GLN A 192   DA C   5                    
SITE     2 AC1  7  DG C   6   DG D   5   DG D   6                               
SITE     1 AC2  4 THR A  10  SER A  11  GLU A  16  ASP B 172                    
SITE     1 AC3  6 GLU B 179  GLN B 192   DA C   5   DG C   6                    
SITE     2 AC3  6  DG D   5   DG D   6                                          
SITE     1 AC4 10 TRP B  77   DG C   6   DG C   7   DT C   8                    
SITE     2 AC4 10  DC C   9   DC C  11   DG D   6   DG D   7                    
SITE     3 AC4 10  DG D   8   DC D   9                                          
SITE     1 AC5  8 GLU A 156   DA C   5   DG C   6   DG C  12                    
SITE     2 AC5  8  DG D   5   DG D   6   DA D  12   DG D  13                    
SITE     1 AC6  8 GLU B 156   DA C   5   DG C   6   DG C  12                    
SITE     2 AC6  8  DT C  13   DG D   6   DA D  12   DG D  13                    
CRYST1   92.030   92.030  405.350  90.00  90.00 120.00 P 61 2 2     24          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010866  0.006274  0.000000        0.00000                         
SCALE2      0.000000  0.012547  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.002467        0.00000