PDB Short entry for 5GVO HEADER UNKNOWN FUNCTION 06-SEP-16 5GVO TITLE SOLUTION NMR STRUCTURE OF A NEW LASSO PEPTIDE SPHAERICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-39; COMPND 5 SYNONYM: SPHAERICIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANOMONOSPORA SPHAERICA; SOURCE 3 ORGANISM_TAXID: 161355 KEYWDS LASSO PEPTIDE, ANTIBACTERIAL, STRUCTURE FROM MOLMOL, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.HEMMI,S.KODANI,Y.INOUE,M.SUZUKI,H.DOHRA,T.SUZUKI,M.OHNISHI-KAMEYAMA REVDAT 1 05-APR-17 5GVO 0 JRNL AUTH S.KODANI,Y.INOUE,M.SUZUKI,H.DOHRA,T.SUZUKI,H.HEMMI, JRNL AUTH 2 M.OHNISHI-KAMEYAMA JRNL TITL SPHAERICIN, A LASSO PEPTIDE FROM THE RARE ACTINOMYCETE JRNL TITL 2 PLANOMONOSPORA SPHAERICA JRNL REF EUR.J.ORG.CHEM. 1177 2017 JRNL REFN ISSN 1434-193X JRNL DOI 10.1002/EJOC.201601334 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NOT DETECTED REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MG/ML NA-C,H PEPTIDE, DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 ILE A 18 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 6 -63.73 -134.41 REMARK 500 1 SER A 12 149.88 177.31 REMARK 500 2 SER A 12 154.68 179.97 REMARK 500 2 PRO A 17 -171.17 -69.25 REMARK 500 3 TRP A 6 -63.07 -129.83 REMARK 500 3 SER A 12 144.81 172.56 REMARK 500 4 SER A 12 144.10 -177.70 REMARK 500 5 TRP A 6 -46.05 -137.93 REMARK 500 6 TRP A 6 -64.55 -125.42 REMARK 500 7 SER A 12 149.76 176.45 REMARK 500 8 TRP A 6 -44.94 -133.29 REMARK 500 8 SER A 12 142.06 179.59 REMARK 500 8 PRO A 17 -165.28 -75.83 REMARK 500 9 TRP A 6 -47.16 -133.82 REMARK 500 9 ILE A 8 159.22 -48.14 REMARK 500 9 PRO A 17 88.69 -67.48 REMARK 500 10 TRP A 6 -44.19 -134.68 REMARK 500 10 SER A 12 129.04 -179.30 REMARK 500 11 ILE A 8 155.46 -48.77 REMARK 500 12 TRP A 6 -64.61 -121.74 REMARK 500 12 ILE A 8 155.53 -46.19 REMARK 500 12 SER A 12 144.54 175.87 REMARK 500 13 PRO A 3 59.58 -67.42 REMARK 500 13 TRP A 6 -39.31 -149.39 REMARK 500 13 SER A 12 133.37 177.17 REMARK 500 14 TRP A 6 -59.32 -133.40 REMARK 500 14 SER A 12 145.73 175.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36017 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF A NEW LASSO PEPTIDE SPHAERICIN DBREF1 5GVO A 1 18 UNP A0A171DJY5_9ACTN DBREF2 5GVO A A0A171DJY5 22 39 SEQRES 1 A 18 GLY LEU PRO ILE GLY TRP TRP ILE GLU ARG PRO SER GLY SEQRES 2 A 18 TRP TYR PHE PRO ILE SHEET 1 AA1 2 TRP A 7 ILE A 8 0 SHEET 2 AA1 2 TRP A 14 TYR A 15 -1 O TYR A 15 N TRP A 7 LINK N GLY A 1 CD GLU A 9 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000