PDB Short entry for 5H8O HEADER IMMUNE SYSTEM 23-DEC-15 5H8O TITLE CRYSTAL STRUCTURE OF AN ASC-BINDING NANOBODY IN COMPLEX WITH THE CARD TITLE 2 DOMAIN OF ASC COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH NANOBODY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: APOPTOSIS-ASSOCIATED SPECK-LIKE PROTEIN CONTAINING A CARD; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: HASC,CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 5,PYD AND COMPND 9 CARD DOMAIN-CONTAINING PROTEIN,TARGET OF METHYLATION-INDUCED COMPND 10 SILENCING 1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: PYCARD, ASC, CARD5, TMS1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VHH NANOBODY, ASC-BINDING, ANTIBODY FRAGMENT, INFLAMMASOME, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.LU,F.I.SCHMIDT,J.RUAN,C.TANG,H.WU,H.L.PLOEGH REVDAT 3 18-MAY-16 5H8O 1 REMARK REVDAT 2 27-APR-16 5H8O 1 JRNL REVDAT 1 06-APR-16 5H8O 0 JRNL AUTH F.I.SCHMIDT,A.LU,J.W.CHEN,J.RUAN,C.TANG,H.WU,H.L.PLOEGH JRNL TITL A SINGLE DOMAIN ANTIBODY FRAGMENT THAT RECOGNIZES THE JRNL TITL 2 ADAPTOR ASC DEFINES THE ROLE OF ASC DOMAINS IN INFLAMMASOME JRNL TITL 3 ASSEMBLY. JRNL REF J.EXP.MED. V. 213 771 2016 JRNL REFN ESSN 1540-9538 JRNL PMID 27069117 JRNL DOI 10.1084/JEM.20151790 REMARK 2 REMARK 2 RESOLUTION. 4.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 2025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.303 REMARK 3 R VALUE (WORKING SET) : 0.300 REMARK 3 FREE R VALUE : 0.356 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.2061 0.99 1916 109 0.2998 0.3556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1063 REMARK 3 ANGLE : 1.151 1455 REMARK 3 CHIRALITY : 0.038 172 REMARK 3 PLANARITY : 0.005 204 REMARK 3 DIHEDRAL : 12.084 285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -1.7913 7.7117 22.6124 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.4568 REMARK 3 T33: -0.1266 T12: 0.0915 REMARK 3 T13: -0.2352 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.8005 L22: 1.9681 REMARK 3 L33: 1.1547 L12: 0.8979 REMARK 3 L13: 0.6353 L23: 0.5119 REMARK 3 S TENSOR REMARK 3 S11: -0.3620 S12: 0.7250 S13: -0.2578 REMARK 3 S21: -0.4619 S22: 0.2960 S23: -0.7249 REMARK 3 S31: 0.0839 S32: -0.4030 S33: -0.0317 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2025 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 79.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.82400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID AT PH 3.5 AND 3 M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 42 REMARK 465 PRO A 43 REMARK 465 GLY A 44 REMARK 465 LYS A 45 REMARK 465 SER A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 VAL B 140 REMARK 465 LEU B 141 REMARK 465 THR B 142 REMARK 465 ASP B 143 REMARK 465 GLU B 144 REMARK 465 GLN B 145 REMARK 465 TYR B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 VAL A 4 CG1 CG2 REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 SER A 9 OG REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 SER A 19 OG REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 SER A 23 OG REMARK 470 SER A 27 OG REMARK 470 THR A 30 OG1 CG2 REMARK 470 SER A 32 OG REMARK 470 TYR A 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 36 CG SD CE REMARK 470 SER A 37 OG REMARK 470 TRP A 38 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 38 CZ3 CH2 REMARK 470 TYR A 39 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 53 CG1 CG2 CD1 REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 TYR A 62 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 65 OG REMARK 470 VAL A 66 CG1 CG2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 THR A 71 OG1 CG2 REMARK 470 ILE A 72 CG1 CG2 CD1 REMARK 470 SER A 73 OG REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 79 CG OD1 ND2 REMARK 470 THR A 80 OG1 CG2 REMARK 470 TYR A 82 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 83 CG CD1 CD2 REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 MET A 85 CG SD CE REMARK 470 ASN A 86 CG OD1 ND2 REMARK 470 SER A 87 OG REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 THR A 93 OG1 CG2 REMARK 470 VAL A 95 CG1 CG2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 100 CG1 CG2 REMARK 470 PHE A 103 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 104 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 104 CZ3 CH2 REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 VAL A 110 CG1 CG2 REMARK 470 THR A 111 OG1 CG2 REMARK 470 VAL A 112 CG1 CG2 REMARK 470 SER A 113 OG REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 ASP B 116 CG OD1 OD2 REMARK 470 HIS B 118 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 122 CG CD1 CD2 REMARK 470 ILE B 123 CG1 CG2 CD1 REMARK 470 VAL B 126 CG1 CG2 REMARK 470 THR B 127 OG1 CG2 REMARK 470 ASN B 128 CG OD1 ND2 REMARK 470 VAL B 129 CG1 CG2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 LEU B 132 CG CD1 CD2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 ASP B 134 CG OD1 OD2 REMARK 470 LEU B 136 CG CD1 CD2 REMARK 470 TYR B 137 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 GLN B 147 CG CD OE1 NE2 REMARK 470 VAL B 149 CG1 CG2 REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 THR B 154 OG1 CG2 REMARK 470 ASN B 155 CG OD1 ND2 REMARK 470 SER B 157 OG REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 MET B 159 CG SD CE REMARK 470 LEU B 162 CG CD1 CD2 REMARK 470 SER B 164 OG REMARK 470 PHE B 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 166 OG1 CG2 REMARK 470 TRP B 169 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 169 CZ3 CH2 REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 TRP B 171 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 171 CZ3 CH2 REMARK 470 THR B 172 OG1 CG2 REMARK 470 CYS B 173 SG REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 ASP B 175 CG OD1 OD2 REMARK 470 LEU B 176 CG CD1 CD2 REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 LEU B 181 CG CD1 CD2 REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 SER B 186 OG REMARK 470 VAL B 189 CG1 CG2 REMARK 470 LEU B 192 CG CD1 CD2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 90 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 69 -65.10 -128.43 REMARK 500 THR B 127 -121.69 67.45 REMARK 500 SER B 184 -74.95 -99.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 126 THR B 127 -143.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H8D RELATED DB: PDB REMARK 900 5H8D CONTAINS THE VHH ALONE STRUCTURE AT HIGHER RESOLUTION. DBREF 5H8O A 3 116 PDB 5H8O 5H8O 3 116 DBREF 5H8O B 115 195 UNP Q9ULZ3 ASC_HUMAN 115 195 SEQRES 1 A 114 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 114 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 114 PHE THR PHE SER ARG TYR ALA MET SER TRP TYR ARG GLN SEQRES 4 A 114 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ARG ILE SER SEQRES 5 A 114 SER GLY GLY GLY THR ILE TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 114 GLY ARG PHE THR ILE SER ARG GLU ASP ALA LYS ASN THR SEQRES 7 A 114 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 114 ALA VAL TYR TYR CYS TYR VAL GLY GLY PHE TRP GLY GLN SEQRES 9 A 114 GLY THR GLN VAL THR VAL SER SER GLY GLY SEQRES 1 B 81 ILE ASP GLN HIS ARG ALA ALA LEU ILE ALA ARG VAL THR SEQRES 2 B 81 ASN VAL GLU TRP LEU LEU ASP ALA LEU TYR GLY LYS VAL SEQRES 3 B 81 LEU THR ASP GLU GLN TYR GLN ALA VAL ARG ALA GLU PRO SEQRES 4 B 81 THR ASN PRO SER LYS MET ARG LYS LEU PHE SER PHE THR SEQRES 5 B 81 PRO ALA TRP ASN TRP THR CYS LYS ASP LEU LEU LEU GLN SEQRES 6 B 81 ALA LEU ARG GLU SER GLN SER TYR LEU VAL GLU ASP LEU SEQRES 7 B 81 GLU ARG SER HELIX 1 AA1 HIS B 118 ARG B 125 1 8 HELIX 2 AA2 VAL B 129 TYR B 137 1 9 HELIX 3 AA3 THR B 154 LYS B 161 1 8 HELIX 4 AA4 LEU B 162 SER B 164 5 3 HELIX 5 AA5 PHE B 165 TRP B 169 5 5 HELIX 6 AA6 ASN B 170 GLU B 183 1 14 HELIX 7 AA7 GLN B 185 ARG B 194 1 10 SHEET 1 AA1 4 GLN A 5 SER A 9 0 SHEET 2 AA1 4 LEU A 20 SER A 27 -1 O SER A 23 N SER A 9 SHEET 3 AA1 4 THR A 80 MET A 85 -1 O MET A 85 N LEU A 20 SHEET 4 AA1 4 THR A 71 GLU A 75 -1 N GLU A 75 O THR A 80 SHEET 1 AA2 6 GLY A 12 VAL A 14 0 SHEET 2 AA2 6 THR A 108 VAL A 112 1 O THR A 111 N GLY A 12 SHEET 3 AA2 6 VAL A 95 VAL A 100 -1 N TYR A 96 O THR A 108 SHEET 4 AA2 6 MET A 36 GLN A 41 -1 N SER A 37 O TYR A 99 SHEET 5 AA2 6 GLU A 48 ILE A 53 -1 O ILE A 53 N MET A 36 SHEET 6 AA2 6 ILE A 60 TYR A 62 -1 O TYR A 61 N ARG A 52 SHEET 1 AA3 4 GLY A 12 VAL A 14 0 SHEET 2 AA3 4 THR A 108 VAL A 112 1 O THR A 111 N GLY A 12 SHEET 3 AA3 4 VAL A 95 VAL A 100 -1 N TYR A 96 O THR A 108 SHEET 4 AA3 4 PHE A 103 TRP A 104 -1 O PHE A 103 N VAL A 100 SSBOND 1 CYS A 24 CYS A 98 1555 1555 2.03 CISPEP 1 ALA A 77 LYS A 78 0 26.87 CRYST1 53.625 30.996 79.244 90.00 90.00 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.032262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012619 0.00000