PDB Short entry for 5HG1 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-JAN-16 5HG1 TITLE CRYSTAL STRUCTURE OF HUMAN HEXOKINASE 2 WITH CMPD 1, A C-2-SUBSTITUTED TITLE 2 GLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXOKINASE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEXOKINASE TYPE II,HK II,MUSCLE FORM HEXOKINASE; COMPND 5 EC: 2.7.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METABOLISM, INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CAMPOBASSO,B.ZHAO,A.SMALLWOOD REVDAT 3 06-MAR-24 5HG1 1 HETSYN REVDAT 2 29-JUL-20 5HG1 1 COMPND REMARK HETNAM SITE REVDAT 1 30-MAR-16 5HG1 0 JRNL AUTH H.LIN,J.ZENG,R.XIE,M.J.SCHULZ,R.TEDESCO,J.QU,K.F.ERHARD, JRNL AUTH 2 J.F.MACK,K.RAHA,A.R.RENDINA,L.M.SZEWCZUK,P.M.KRATZ, JRNL AUTH 3 A.J.JUREWICZ,T.CECCONIE,S.MARTENS,P.J.MCDEVITT,J.D.MARTIN, JRNL AUTH 4 S.B.CHEN,Y.JIANG,L.NICKELS,B.J.SCHWARTZ,A.SMALLWOOD,B.ZHAO, JRNL AUTH 5 N.CAMPOBASSO,Y.QIAN,J.BRIAND,C.M.ROMINGER,C.OLEYKOWSKI, JRNL AUTH 6 M.A.HARDWICKE,J.I.LUENGO JRNL TITL DISCOVERY OF A NOVEL 2,6-DISUBSTITUTED GLUCOSAMINE SERIES OF JRNL TITL 2 POTENT AND SELECTIVE HEXOKINASE 2 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 7 217 2016 JRNL REFN ISSN 1948-5875 JRNL PMID 26985301 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00214 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.5231 - 7.2189 0.99 2862 153 0.1910 0.2279 REMARK 3 2 7.2189 - 5.7306 1.00 2803 122 0.2239 0.2603 REMARK 3 3 5.7306 - 5.0065 1.00 2791 126 0.1967 0.2068 REMARK 3 4 5.0065 - 4.5488 1.00 2756 125 0.1699 0.2281 REMARK 3 5 4.5488 - 4.2228 1.00 2720 149 0.1763 0.2159 REMARK 3 6 4.2228 - 3.9739 1.00 2738 133 0.1936 0.2690 REMARK 3 7 3.9739 - 3.7749 1.00 2704 152 0.2129 0.2931 REMARK 3 8 3.7749 - 3.6105 1.00 2731 138 0.2203 0.2504 REMARK 3 9 3.6105 - 3.4715 1.00 2720 123 0.2269 0.2635 REMARK 3 10 3.4715 - 3.3518 1.00 2707 149 0.2408 0.3070 REMARK 3 11 3.3518 - 3.2470 1.00 2700 138 0.2581 0.3334 REMARK 3 12 3.2470 - 3.1541 1.00 2685 159 0.2801 0.3240 REMARK 3 13 3.1541 - 3.0711 1.00 2681 171 0.2800 0.3174 REMARK 3 14 3.0711 - 2.9962 1.00 2705 134 0.2875 0.3318 REMARK 3 15 2.9962 - 2.9281 1.00 2740 100 0.2895 0.3719 REMARK 3 16 2.9281 - 2.8657 1.00 2705 130 0.2922 0.3908 REMARK 3 17 2.8657 - 2.8084 1.00 2661 134 0.3096 0.3385 REMARK 3 18 2.8084 - 2.7554 1.00 2712 140 0.3338 0.3849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6701 REMARK 3 ANGLE : 1.234 9041 REMARK 3 CHIRALITY : 0.069 1043 REMARK 3 PLANARITY : 0.009 1173 REMARK 3 DIHEDRAL : 10.852 5455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 - 6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 126.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 6.6 MGS/ML, 10MM TRIS HCL, REMARK 280 PH=8, 0.1 M NACL, 1MM DTT, 20MM MGCL2 WELL: 0.2 M NA CITRATE PH REMARK 280 5.5, 14-24 % PEG3350, 20 % ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.15933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.31867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.31867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.15933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 LEU A 11 REMARK 465 TYR A 12 REMARK 465 PHE A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 ALA A 113 REMARK 465 ILE A 114 REMARK 465 PRO A 115 REMARK 465 GLU A 116 REMARK 465 ASP A 117 REMARK 465 ILE A 118 REMARK 465 MET A 119 REMARK 465 ARG A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 TRP A 171 REMARK 465 THR A 172 REMARK 465 LYS A 173 REMARK 465 GLY A 174 REMARK 465 PHE A 175 REMARK 465 LYS A 176 REMARK 465 SER A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 VAL A 180 REMARK 465 GLU A 181 REMARK 465 ARG A 195 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 ASP A 198 REMARK 465 PHE A 199 REMARK 465 ASP A 200 REMARK 465 LYS A 549 REMARK 465 TRP A 550 REMARK 465 GLY A 551 REMARK 465 ALA A 914 REMARK 465 GLY A 915 REMARK 465 GLN A 916 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 LYS A 41 CD CE NZ REMARK 470 LYS A 45 CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 PHE A 90 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 LYS A 96 CD CE NZ REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 ASN A 100 CB CG OD1 ND2 REMARK 470 LEU A 102 CG CD1 CD2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 VAL A 105 CG1 CG2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 MET A 107 CG SD CE REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 GLN A 110 CD OE1 NE2 REMARK 470 HIS A 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 MET A 138 CG SD CE REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LEU A 141 CD1 CD2 REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 LYS A 146 CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 SER A 155 OG REMARK 470 PHE A 156 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 167 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 VAL A 169 CG1 CG2 REMARK 470 SER A 170 OG REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 ILE A 189 CG1 CG2 CD1 REMARK 470 ILE A 193 CG1 CG2 CD1 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 ASP A 447 CG OD1 OD2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 525 CG CD CE NZ REMARK 470 ARG A 546 CD NE CZ NH1 NH2 REMARK 470 GLN A 564 CG CD OE1 NE2 REMARK 470 GLU A 565 CG CD OE1 OE2 REMARK 470 LYS A 592 CB CG CD CE NZ REMARK 470 SER A 595 OG REMARK 470 LYS A 624 CG CD CE NZ REMARK 470 LEU A 649 CD1 CD2 REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 GLU A 700 CG CD OE1 OE2 REMARK 470 GLU A 810 CG CD OE1 OE2 REMARK 470 LYS A 873 CD CE NZ REMARK 470 LYS A 880 NZ REMARK 470 GLU A 894 CG CD OE1 OE2 REMARK 470 GLU A 913 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 897 O3 BG6 A 1003 1.27 REMARK 500 O THR A 232 OG SER A 298 2.00 REMARK 500 O VAL A 185 N LEU A 188 2.14 REMARK 500 OD2 ASP A 33 NH1 ARG A 433 2.14 REMARK 500 NH1 ARG A 44 OE2 GLU A 48 2.15 REMARK 500 OD1 ASP A 23 NE ARG A 373 2.16 REMARK 500 N ASP A 73 OE2 GLU A 76 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 251 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 PHE A 871 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 140 -71.67 -83.47 REMARK 500 GLU A 165 150.07 170.26 REMARK 500 SER A 166 163.30 175.38 REMARK 500 VAL A 185 -104.25 63.36 REMARK 500 VAL A 186 -38.53 -38.95 REMARK 500 ASP A 251 -54.78 -139.90 REMARK 500 GLU A 252 84.47 63.73 REMARK 500 ILE A 297 -51.85 -133.23 REMARK 500 GLU A 317 -1.17 84.12 REMARK 500 LYS A 346 -70.53 -48.22 REMARK 500 ASP A 362 74.93 -111.83 REMARK 500 THR A 364 -172.12 -64.37 REMARK 500 LYS A 592 -116.45 51.86 REMARK 500 PRO A 605 92.22 -69.51 REMARK 500 LYS A 621 -130.63 58.09 REMARK 500 CYS A 628 -55.64 -127.21 REMARK 500 GLU A 646 -73.71 -114.52 REMARK 500 LEU A 795 -112.50 58.35 REMARK 500 GLU A 894 -23.15 74.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 438 ASP A 439 142.46 REMARK 500 LEU A 807 GLY A 808 -143.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 782 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HEX RELATED DB: PDB REMARK 900 RELATED ID: 5HFU RELATED DB: PDB DBREF 5HG1 A 17 916 UNP P52789 HXK2_HUMAN 17 916 SEQADV 5HG1 MET A -5 UNP P52789 INITIATING METHIONINE SEQADV 5HG1 GLY A -4 UNP P52789 EXPRESSION TAG SEQADV 5HG1 SER A -3 UNP P52789 EXPRESSION TAG SEQADV 5HG1 SER A -2 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A -1 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A 0 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A 1 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A 2 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A 3 UNP P52789 EXPRESSION TAG SEQADV 5HG1 HIS A 4 UNP P52789 EXPRESSION TAG SEQADV 5HG1 SER A 5 UNP P52789 EXPRESSION TAG SEQADV 5HG1 SER A 6 UNP P52789 EXPRESSION TAG SEQADV 5HG1 GLY A 7 UNP P52789 EXPRESSION TAG SEQADV 5HG1 LEU A 8 UNP P52789 EXPRESSION TAG SEQADV 5HG1 GLU A 9 UNP P52789 EXPRESSION TAG SEQADV 5HG1 ASN A 10 UNP P52789 EXPRESSION TAG SEQADV 5HG1 LEU A 11 UNP P52789 EXPRESSION TAG SEQADV 5HG1 TYR A 12 UNP P52789 EXPRESSION TAG SEQADV 5HG1 PHE A 13 UNP P52789 EXPRESSION TAG SEQADV 5HG1 GLN A 14 UNP P52789 EXPRESSION TAG SEQADV 5HG1 GLY A 15 UNP P52789 EXPRESSION TAG SEQADV 5HG1 SER A 16 UNP P52789 EXPRESSION TAG SEQRES 1 A 922 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 922 LEU GLU ASN LEU TYR PHE GLN GLY SER ASP GLN VAL GLN SEQRES 3 A 922 LYS VAL ASP GLN TYR LEU TYR HIS MET ARG LEU SER ASP SEQRES 4 A 922 GLU THR LEU LEU GLU ILE SER LYS ARG PHE ARG LYS GLU SEQRES 5 A 922 MET GLU LYS GLY LEU GLY ALA THR THR HIS PRO THR ALA SEQRES 6 A 922 ALA VAL LYS MET LEU PRO THR PHE VAL ARG SER THR PRO SEQRES 7 A 922 ASP GLY THR GLU HIS GLY GLU PHE LEU ALA LEU ASP LEU SEQRES 8 A 922 GLY GLY THR ASN PHE ARG VAL LEU TRP VAL LYS VAL THR SEQRES 9 A 922 ASP ASN GLY LEU GLN LYS VAL GLU MET GLU ASN GLN ILE SEQRES 10 A 922 TYR ALA ILE PRO GLU ASP ILE MET ARG GLY SER GLY THR SEQRES 11 A 922 GLN LEU PHE ASP HIS ILE ALA GLU CYS LEU ALA ASN PHE SEQRES 12 A 922 MET ASP LYS LEU GLN ILE LYS ASP LYS LYS LEU PRO LEU SEQRES 13 A 922 GLY PHE THR PHE SER PHE PRO CYS HIS GLN THR LYS LEU SEQRES 14 A 922 ASP GLU SER PHE LEU VAL SER TRP THR LYS GLY PHE LYS SEQRES 15 A 922 SER SER GLY VAL GLU GLY ARG ASP VAL VAL ALA LEU ILE SEQRES 16 A 922 ARG LYS ALA ILE GLN ARG ARG GLY ASP PHE ASP ILE ASP SEQRES 17 A 922 ILE VAL ALA VAL VAL ASN ASP THR VAL GLY THR MET MET SEQRES 18 A 922 THR CYS GLY TYR ASP ASP HIS ASN CYS GLU ILE GLY LEU SEQRES 19 A 922 ILE VAL GLY THR GLY SER ASN ALA CYS TYR MET GLU GLU SEQRES 20 A 922 MET ARG HIS ILE ASP MET VAL GLU GLY ASP GLU GLY ARG SEQRES 21 A 922 MET CYS ILE ASN MET GLU TRP GLY ALA PHE GLY ASP ASP SEQRES 22 A 922 GLY SER LEU ASN ASP ILE ARG THR GLU PHE ASP GLN GLU SEQRES 23 A 922 ILE ASP MET GLY SER LEU ASN PRO GLY LYS GLN LEU PHE SEQRES 24 A 922 GLU LYS MET ILE SER GLY MET TYR MET GLY GLU LEU VAL SEQRES 25 A 922 ARG LEU ILE LEU VAL LYS MET ALA LYS GLU GLU LEU LEU SEQRES 26 A 922 PHE GLY GLY LYS LEU SER PRO GLU LEU LEU ASN THR GLY SEQRES 27 A 922 ARG PHE GLU THR LYS ASP ILE SER ASP ILE GLU GLY GLU SEQRES 28 A 922 LYS ASP GLY ILE ARG LYS ALA ARG GLU VAL LEU MET ARG SEQRES 29 A 922 LEU GLY LEU ASP PRO THR GLN GLU ASP CYS VAL ALA THR SEQRES 30 A 922 HIS ARG ILE CYS GLN ILE VAL SER THR ARG SER ALA SER SEQRES 31 A 922 LEU CYS ALA ALA THR LEU ALA ALA VAL LEU GLN ARG ILE SEQRES 32 A 922 LYS GLU ASN LYS GLY GLU GLU ARG LEU ARG SER THR ILE SEQRES 33 A 922 GLY VAL ASP GLY SER VAL TYR LYS LYS HIS PRO HIS PHE SEQRES 34 A 922 ALA LYS ARG LEU HIS LYS THR VAL ARG ARG LEU VAL PRO SEQRES 35 A 922 GLY CYS ASP VAL ARG PHE LEU ARG SER GLU ASP GLY SER SEQRES 36 A 922 GLY LYS GLY ALA ALA MET VAL THR ALA VAL ALA TYR ARG SEQRES 37 A 922 LEU ALA ASP GLN HIS ARG ALA ARG GLN LYS THR LEU GLU SEQRES 38 A 922 HIS LEU GLN LEU SER HIS ASP GLN LEU LEU GLU VAL LYS SEQRES 39 A 922 ARG ARG MET LYS VAL GLU MET GLU ARG GLY LEU SER LYS SEQRES 40 A 922 GLU THR HIS ALA SER ALA PRO VAL LYS MET LEU PRO THR SEQRES 41 A 922 TYR VAL CYS ALA THR PRO ASP GLY THR GLU LYS GLY ASP SEQRES 42 A 922 PHE LEU ALA LEU ASP LEU GLY GLY THR ASN PHE ARG VAL SEQRES 43 A 922 LEU LEU VAL ARG VAL ARG ASN GLY LYS TRP GLY GLY VAL SEQRES 44 A 922 GLU MET HIS ASN LYS ILE TYR ALA ILE PRO GLN GLU VAL SEQRES 45 A 922 MET HIS GLY THR GLY ASP GLU LEU PHE ASP HIS ILE VAL SEQRES 46 A 922 GLN CYS ILE ALA ASP PHE LEU GLU TYR MET GLY MET LYS SEQRES 47 A 922 GLY VAL SER LEU PRO LEU GLY PHE THR PHE SER PHE PRO SEQRES 48 A 922 CYS GLN GLN ASN SER LEU ASP GLU SER ILE LEU LEU LYS SEQRES 49 A 922 TRP THR LYS GLY PHE LYS ALA SER GLY CYS GLU GLY GLU SEQRES 50 A 922 ASP VAL VAL THR LEU LEU LYS GLU ALA ILE HIS ARG ARG SEQRES 51 A 922 GLU GLU PHE ASP LEU ASP VAL VAL ALA VAL VAL ASN ASP SEQRES 52 A 922 THR VAL GLY THR MET MET THR CYS GLY PHE GLU ASP PRO SEQRES 53 A 922 HIS CYS GLU VAL GLY LEU ILE VAL GLY THR GLY SER ASN SEQRES 54 A 922 ALA CYS TYR MET GLU GLU MET ARG ASN VAL GLU LEU VAL SEQRES 55 A 922 GLU GLY GLU GLU GLY ARG MET CYS VAL ASN MET GLU TRP SEQRES 56 A 922 GLY ALA PHE GLY ASP ASN GLY CYS LEU ASP ASP PHE ARG SEQRES 57 A 922 THR GLU PHE ASP VAL ALA VAL ASP GLU LEU SER LEU ASN SEQRES 58 A 922 PRO GLY LYS GLN ARG PHE GLU LYS MET ILE SER GLY MET SEQRES 59 A 922 TYR LEU GLY GLU ILE VAL ARG ASN ILE LEU ILE ASP PHE SEQRES 60 A 922 THR LYS ARG GLY LEU LEU PHE ARG GLY ARG ILE SER GLU SEQRES 61 A 922 ARG LEU LYS THR ARG GLY ILE PHE GLU THR LYS PHE LEU SEQRES 62 A 922 SER GLN ILE GLU SER ASP CYS LEU ALA LEU LEU GLN VAL SEQRES 63 A 922 ARG ALA ILE LEU GLN HIS LEU GLY LEU GLU SER THR CYS SEQRES 64 A 922 ASP ASP SER ILE ILE VAL LYS GLU VAL CYS THR VAL VAL SEQRES 65 A 922 ALA ARG ARG ALA ALA GLN LEU CYS GLY ALA GLY MET ALA SEQRES 66 A 922 ALA VAL VAL ASP ARG ILE ARG GLU ASN ARG GLY LEU ASP SEQRES 67 A 922 ALA LEU LYS VAL THR VAL GLY VAL ASP GLY THR LEU TYR SEQRES 68 A 922 LYS LEU HIS PRO HIS PHE ALA LYS VAL MET HIS GLU THR SEQRES 69 A 922 VAL LYS ASP LEU ALA PRO LYS CYS ASP VAL SER PHE LEU SEQRES 70 A 922 GLN SER GLU ASP GLY SER GLY LYS GLY ALA ALA LEU ILE SEQRES 71 A 922 THR ALA VAL ALA CYS ARG ILE ARG GLU ALA GLY GLN HET 62C A1001 41 HET 62C A1002 41 HET BG6 A1003 16 HET FLC A1004 18 HETNAM 62C 2-DEOXY-2-{[(2E)-3-(3,4-DICHLOROPHENYL)PROP-2- HETNAM 2 62C ENOYL]AMINO}-ALPHA-D-GLUCOPYRANOSE HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM FLC CITRATE ANION HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 62C 2(C15 H17 CL2 N O6) FORMUL 4 BG6 C6 H13 O9 P FORMUL 5 FLC C6 H5 O7 3- FORMUL 6 HOH *8(H2 O) HELIX 1 AA1 ASP A 17 LEU A 26 1 10 HELIX 2 AA2 TYR A 27 ARG A 30 5 4 HELIX 3 AA3 SER A 32 GLY A 52 1 21 HELIX 4 AA4 THR A 55 ALA A 59 5 5 HELIX 5 AA5 THR A 124 ASP A 128 1 5 HELIX 6 AA6 GLU A 132 PHE A 137 1 6 HELIX 7 AA7 MET A 138 LYS A 140 5 3 HELIX 8 AA8 GLN A 142 LYS A 146 5 5 HELIX 9 AA9 ALA A 187 ALA A 192 1 6 HELIX 10 AB1 ASN A 208 ASP A 221 1 14 HELIX 11 AB2 ARG A 243 ILE A 245 5 3 HELIX 12 AB3 GLU A 260 PHE A 264 5 5 HELIX 13 AB4 THR A 275 SER A 285 1 11 HELIX 14 AB5 GLN A 291 MET A 296 1 6 HELIX 15 AB6 TYR A 301 GLU A 316 1 16 HELIX 16 AB7 LEU A 319 LYS A 323 5 5 HELIX 17 AB8 PRO A 326 ASN A 330 5 5 HELIX 18 AB9 GLU A 335 GLU A 345 1 11 HELIX 19 AC1 GLY A 348 LEU A 359 1 12 HELIX 20 AC2 THR A 364 GLY A 402 1 39 HELIX 21 AC3 GLY A 414 HIS A 420 1 7 HELIX 22 AC4 HIS A 422 VAL A 435 1 14 HELIX 23 AC5 LYS A 451 HIS A 476 1 26 HELIX 24 AC6 SER A 480 SER A 500 1 21 HELIX 25 AC7 PRO A 563 HIS A 568 1 6 HELIX 26 AC8 THR A 570 MET A 589 1 20 HELIX 27 AC9 ASP A 632 GLU A 645 1 14 HELIX 28 AD1 ASN A 656 ASP A 669 1 14 HELIX 29 AD2 GLU A 708 PHE A 712 5 5 HELIX 30 AD3 LEU A 718 ARG A 722 5 5 HELIX 31 AD4 THR A 723 LEU A 732 1 10 HELIX 32 AD5 GLN A 739 SER A 746 1 8 HELIX 33 AD6 MET A 748 ARG A 764 1 17 HELIX 34 AD7 LEU A 767 ARG A 771 5 5 HELIX 35 AD8 GLU A 774 THR A 778 5 5 HELIX 36 AD9 GLU A 783 SER A 792 1 10 HELIX 37 AE1 LEU A 797 LEU A 807 1 11 HELIX 38 AE2 THR A 812 ARG A 849 1 38 HELIX 39 AE3 GLY A 862 HIS A 868 1 7 HELIX 40 AE4 HIS A 870 ALA A 883 1 14 HELIX 41 AE5 SER A 897 GLU A 913 1 17 SHEET 1 AA1 6 LEU A 64 PRO A 65 0 SHEET 2 AA1 6 ARG A 254 ASN A 258 -1 O ASN A 258 N LEU A 64 SHEET 3 AA1 6 SER A 234 GLU A 241 -1 N GLU A 240 O MET A 255 SHEET 4 AA1 6 ILE A 226 VAL A 230 -1 N ILE A 229 O ASN A 235 SHEET 5 AA1 6 LEU A 406 ASP A 413 1 O GLY A 411 N ILE A 226 SHEET 6 AA1 6 CYS A 438 ARG A 444 1 O LEU A 443 N VAL A 412 SHEET 1 AA2 5 GLU A 106 MET A 107 0 SHEET 2 AA2 5 VAL A 92 VAL A 97 -1 N LYS A 96 O GLU A 106 SHEET 3 AA2 5 GLY A 78 ASP A 84 -1 N PHE A 80 O VAL A 95 SHEET 4 AA2 5 LEU A 150 THR A 153 1 O GLY A 151 N LEU A 81 SHEET 5 AA2 5 VAL A 204 VAL A 207 1 O VAL A 207 N PHE A 152 SHEET 1 AA3 6 LEU A 512 PRO A 513 0 SHEET 2 AA3 6 ARG A 702 ASN A 706 -1 O ASN A 706 N LEU A 512 SHEET 3 AA3 6 SER A 682 GLU A 689 -1 N GLU A 688 O MET A 703 SHEET 4 AA3 6 CYS A 672 VAL A 678 -1 N ILE A 677 O ASN A 683 SHEET 5 AA3 6 LEU A 854 ASP A 861 1 O GLY A 859 N LEU A 676 SHEET 6 AA3 6 CYS A 886 GLN A 892 1 O LEU A 891 N VAL A 860 SHEET 1 AA4 5 VAL A 553 TYR A 560 0 SHEET 2 AA4 5 PHE A 538 VAL A 545 -1 N ARG A 544 O GLU A 554 SHEET 3 AA4 5 GLY A 526 LEU A 533 -1 N ALA A 530 O LEU A 541 SHEET 4 AA4 5 LEU A 596 PHE A 602 1 O THR A 601 N LEU A 531 SHEET 5 AA4 5 LEU A 649 VAL A 655 1 O VAL A 655 N PHE A 600 SHEET 1 AA5 2 CYS A 606 SER A 610 0 SHEET 2 AA5 2 GLU A 613 LEU A 616 -1 O ILE A 615 N GLN A 607 CISPEP 1 ASP A 251 GLU A 252 0 25.74 CRYST1 165.120 165.120 126.478 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006056 0.003497 0.000000 0.00000 SCALE2 0.000000 0.006993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007907 0.00000