PDB Short entry for 5HKJ HEADER SIGNALING PROTEIN 14-JAN-16 5HKJ TITLE SINGLE CHAIN RECOMBINANT GLOBULAR HEAD OF THE COMPLEMENT SYSTEM TITLE 2 PROTEIN C1Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C1Q SUBCOMPONENT SUBUNIT A,COMPLEMENT C1Q COMPND 3 SUBCOMPONENT SUBUNIT C,COMPLEMENT C1Q SUBCOMPONENT SUBUNIT B; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C1QA, C1QC, C1QG, C1QB; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-F; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS GC1Q DOMAIN, COMPLEMENT, C1Q, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.P.MOREAU,C.GABORIAUD REVDAT 5 10-JAN-24 5HKJ 1 REMARK HETSYN REVDAT 4 29-JUL-20 5HKJ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 30-AUG-17 5HKJ 1 REMARK REVDAT 2 30-MAR-16 5HKJ 1 JRNL REVDAT 1 02-MAR-16 5HKJ 0 JRNL AUTH C.MOREAU,I.BALLY,A.CHOUQUET,B.BOTTAZZI,B.GHEBREHIWET, JRNL AUTH 2 C.GABORIAUD,N.THIELENS JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A SINGLE-CHAIN JRNL TITL 2 FORM OF THE RECOGNITION DOMAIN OF COMPLEMENT PROTEIN C1Q. JRNL REF FRONT IMMUNOL V. 7 79 2016 JRNL REFN ESSN 1664-3224 JRNL PMID 26973654 JRNL DOI 10.3389/FIMMU.2016.00079 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 74612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8427 - 4.0490 0.99 2727 133 0.1534 0.1808 REMARK 3 2 4.0490 - 3.2142 0.99 2669 152 0.1521 0.1634 REMARK 3 3 3.2142 - 2.8080 0.99 2673 141 0.1778 0.1869 REMARK 3 4 2.8080 - 2.5513 1.00 2656 136 0.1833 0.2060 REMARK 3 5 2.5513 - 2.3684 1.00 2694 123 0.1791 0.2171 REMARK 3 6 2.3684 - 2.2288 0.99 2641 133 0.1683 0.1799 REMARK 3 7 2.2288 - 2.1172 1.00 2621 155 0.1676 0.2072 REMARK 3 8 2.1172 - 2.0250 1.00 2642 140 0.1626 0.1965 REMARK 3 9 2.0250 - 1.9471 1.00 2640 155 0.1606 0.1900 REMARK 3 10 1.9471 - 1.8799 0.99 2634 151 0.1601 0.1776 REMARK 3 11 1.8799 - 1.8211 0.99 2633 131 0.1608 0.1969 REMARK 3 12 1.8211 - 1.7690 0.99 2622 135 0.1607 0.1942 REMARK 3 13 1.7690 - 1.7225 0.99 2621 147 0.1705 0.2297 REMARK 3 14 1.7225 - 1.6804 0.99 2624 143 0.1762 0.1747 REMARK 3 15 1.6804 - 1.6422 0.99 2646 129 0.1722 0.2151 REMARK 3 16 1.6422 - 1.6073 1.00 2638 130 0.1797 0.2066 REMARK 3 17 1.6073 - 1.5751 0.99 2626 147 0.1883 0.2241 REMARK 3 18 1.5751 - 1.5454 0.99 2635 142 0.1984 0.2574 REMARK 3 19 1.5454 - 1.5178 0.99 2589 145 0.2095 0.2348 REMARK 3 20 1.5178 - 1.4921 0.99 2656 121 0.2194 0.2791 REMARK 3 21 1.4921 - 1.4680 0.99 2590 120 0.2232 0.2379 REMARK 3 22 1.4680 - 1.4454 0.99 2655 151 0.2255 0.2668 REMARK 3 23 1.4454 - 1.4242 0.99 2573 138 0.2380 0.2392 REMARK 3 24 1.4242 - 1.4041 0.99 2668 139 0.2583 0.2949 REMARK 3 25 1.4041 - 1.3851 0.99 2546 150 0.2615 0.2757 REMARK 3 26 1.3851 - 1.3671 0.97 2607 121 0.2839 0.3305 REMARK 3 27 1.3671 - 1.3500 0.90 2338 140 0.3205 0.3590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3452 REMARK 3 ANGLE : 1.471 4720 REMARK 3 CHIRALITY : 0.122 516 REMARK 3 PLANARITY : 0.009 626 REMARK 3 DIHEDRAL : 15.062 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.6994 4.0732 25.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.1657 REMARK 3 T33: 0.1142 T12: 0.0231 REMARK 3 T13: 0.0498 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.4146 L22: 2.8825 REMARK 3 L33: 3.8355 L12: 0.1131 REMARK 3 L13: 0.0546 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.4228 S13: 0.0052 REMARK 3 S21: 0.4492 S22: -0.1294 S23: 0.2359 REMARK 3 S31: 0.0671 S32: -0.3107 S33: 0.0477 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.5081 2.4644 17.5814 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.1097 REMARK 3 T33: 0.1213 T12: -0.0043 REMARK 3 T13: 0.0261 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.9923 L22: 2.2747 REMARK 3 L33: 0.6356 L12: -0.6255 REMARK 3 L13: -0.1492 L23: 0.1746 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.0900 S13: -0.0345 REMARK 3 S21: 0.0464 S22: -0.0032 S23: 0.1241 REMARK 3 S31: 0.0310 S32: -0.1020 S33: 0.0098 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.7957 10.5849 8.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0812 REMARK 3 T33: 0.1386 T12: -0.0203 REMARK 3 T13: -0.0067 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.0854 L22: 1.2664 REMARK 3 L33: 2.0631 L12: -0.0557 REMARK 3 L13: -0.7150 L23: 0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.1451 S13: 0.2388 REMARK 3 S21: -0.1157 S22: 0.0271 S23: -0.0223 REMARK 3 S31: -0.1100 S32: 0.0039 S33: 0.0476 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.1696 9.3771 10.4935 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0920 REMARK 3 T33: 0.1192 T12: -0.0082 REMARK 3 T13: 0.0285 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.8339 L22: 1.6066 REMARK 3 L33: 0.7657 L12: -0.1501 REMARK 3 L13: -0.0121 L23: -0.1088 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0199 S13: 0.1644 REMARK 3 S21: 0.0159 S22: 0.0143 S23: -0.1342 REMARK 3 S31: -0.0682 S32: 0.1019 S33: -0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.5419 11.6011 14.3756 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1016 REMARK 3 T33: 0.1423 T12: -0.0087 REMARK 3 T13: 0.0197 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.9272 L22: 2.5301 REMARK 3 L33: 1.3987 L12: -0.1502 REMARK 3 L13: -0.0188 L23: 0.2172 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.1189 S13: 0.2555 REMARK 3 S21: 0.0604 S22: 0.0178 S23: -0.0725 REMARK 3 S31: -0.1065 S32: 0.0098 S33: -0.0083 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.7631 5.3252 30.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.2636 REMARK 3 T33: 0.1156 T12: 0.0334 REMARK 3 T13: -0.0147 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.9504 L22: 2.1906 REMARK 3 L33: 1.2248 L12: 0.1558 REMARK 3 L13: -0.3176 L23: 0.4906 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.4942 S13: 0.0590 REMARK 3 S21: 0.3027 S22: 0.0539 S23: -0.1338 REMARK 3 S31: 0.0184 S32: 0.1765 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000215949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 0.1 M TRIS, 0.2 M NACL, REMARK 280 50 MM CACL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.55750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.36450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.55750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.36450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 831 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 LYS A 140 REMARK 465 GLN A 141 REMARK 465 GLU A 409 REMARK 465 ALA A 410 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 403 N CA C O CB CG CD1 REMARK 480 LEU A 403 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 799 O HOH A 811 1.34 REMARK 500 OG SER A 70 O HOH A 601 1.87 REMARK 500 NE2 GLN A 256 O HOH A 602 2.07 REMARK 500 O ASP A 407 O HOH A 603 2.15 REMARK 500 O HOH A 605 O HOH A 636 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -57.54 -144.67 REMARK 500 ASN A 30 62.53 -156.99 REMARK 500 GLU A 32 -4.81 80.47 REMARK 500 TRP A 60 -105.30 -134.65 REMARK 500 ASN A 171 56.05 -166.52 REMARK 500 LYS A 223 -52.66 78.59 REMARK 500 ASN A 247 -138.79 -107.93 REMARK 500 ALA A 273 156.56 84.16 REMARK 500 ASN A 305 60.70 -156.90 REMARK 500 ARG A 345 -119.47 -107.00 REMARK 500 ALA A 395 79.07 -160.67 REMARK 500 ALA A 395 82.32 -160.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 90 OE1 REMARK 620 2 ASP A 356 OD1 93.1 REMARK 620 3 TYR A 357 O 92.3 98.9 REMARK 620 4 GLN A 363 OE1 176.7 83.7 87.3 REMARK 620 5 HOH A 793 O 90.6 94.9 165.8 90.5 REMARK 620 6 HOH A 808 O 88.5 173.3 87.5 94.8 78.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HZF RELATED DB: PDB DBREF 5HKJ A 1 136 UNP P02745 C1QA_HUMAN 110 245 DBREF 5HKJ A 140 270 UNP P02747 C1QC_HUMAN 115 245 DBREF 5HKJ A 274 410 UNP P02746 C1QB_HUMAN 117 253 SEQADV 5HKJ GLY A 137 UNP P02745 LINKER SEQADV 5HKJ SER A 138 UNP P02745 LINKER SEQADV 5HKJ GLY A 139 UNP P02745 LINKER SEQADV 5HKJ GLY A 271 UNP P02747 LINKER SEQADV 5HKJ SER A 272 UNP P02747 LINKER SEQADV 5HKJ ALA A 273 UNP P02747 LINKER SEQRES 1 A 410 LYS ASP GLN PRO ARG PRO ALA PHE SER ALA ILE ARG ARG SEQRES 2 A 410 ASN PRO PRO MET GLY GLY ASN VAL VAL ILE PHE ASP THR SEQRES 3 A 410 VAL ILE THR ASN GLN GLU GLU PRO TYR GLN ASN HIS SER SEQRES 4 A 410 GLY ARG PHE VAL CYS THR VAL PRO GLY TYR TYR TYR PHE SEQRES 5 A 410 THR PHE GLN VAL LEU SER GLN TRP GLU ILE CYS LEU SER SEQRES 6 A 410 ILE VAL SER SER SER ARG GLY GLN VAL ARG ARG SER LEU SEQRES 7 A 410 GLY PHE CYS ASP THR THR ASN LYS GLY LEU PHE GLN VAL SEQRES 8 A 410 VAL SER GLY GLY MET VAL LEU GLN LEU GLN GLN GLY ASP SEQRES 9 A 410 GLN VAL TRP VAL GLU LYS ASP PRO LYS LYS GLY HIS ILE SEQRES 10 A 410 TYR GLN GLY SER GLU ALA ASP SER VAL PHE SER GLY PHE SEQRES 11 A 410 LEU ILE PHE PRO SER ALA GLY SER GLY LYS GLN LYS PHE SEQRES 12 A 410 GLN SER VAL PHE THR VAL THR ARG GLN THR HIS GLN PRO SEQRES 13 A 410 PRO ALA PRO ASN SER LEU ILE ARG PHE ASN ALA VAL LEU SEQRES 14 A 410 THR ASN PRO GLN GLY ASP TYR ASP THR SER THR GLY LYS SEQRES 15 A 410 PHE THR CYS LYS VAL PRO GLY LEU TYR TYR PHE VAL TYR SEQRES 16 A 410 HIS ALA SER HIS THR ALA ASN LEU CYS VAL LEU LEU TYR SEQRES 17 A 410 ARG SER GLY VAL LYS VAL VAL THR PHE CYS GLY HIS THR SEQRES 18 A 410 SER LYS THR ASN GLN VAL ASN SER GLY GLY VAL LEU LEU SEQRES 19 A 410 ARG LEU GLN VAL GLY GLU GLU VAL TRP LEU ALA VAL ASN SEQRES 20 A 410 ASP TYR TYR ASP MET VAL GLY ILE GLN GLY SER ASP SER SEQRES 21 A 410 VAL PHE SER GLY PHE LEU LEU PHE PRO ASP GLY SER ALA SEQRES 22 A 410 LYS ALA THR GLN LYS ILE ALA PHE SER ALA THR ARG THR SEQRES 23 A 410 ILE ASN VAL PRO LEU ARG ARG ASP GLN THR ILE ARG PHE SEQRES 24 A 410 ASP HIS VAL ILE THR ASN MET ASN ASN ASN TYR GLU PRO SEQRES 25 A 410 ARG SER GLY LYS PHE THR CYS LYS VAL PRO GLY LEU TYR SEQRES 26 A 410 TYR PHE THR TYR HIS ALA SER SER ARG GLY ASN LEU CYS SEQRES 27 A 410 VAL ASN LEU MET ARG GLY ARG GLU ARG ALA GLN LYS VAL SEQRES 28 A 410 VAL THR PHE CYS ASP TYR ALA TYR ASN THR PHE GLN VAL SEQRES 29 A 410 THR THR GLY GLY MET VAL LEU LYS LEU GLU GLN GLY GLU SEQRES 30 A 410 ASN VAL PHE LEU GLN ALA THR ASP LYS ASN SER LEU LEU SEQRES 31 A 410 GLY MET GLU GLY ALA ASN SER ILE PHE SER GLY PHE LEU SEQRES 32 A 410 LEU PHE PRO ASP MET GLU ALA HET NAG A 501 15 HET CA A 502 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 CA CA 2+ FORMUL 4 HOH *231(H2 O) HELIX 1 AA1 LYS A 274 LYS A 278 5 5 SHEET 1 AA1 5 THR A 26 GLN A 31 0 SHEET 2 AA1 5 ALA A 7 ILE A 11 -1 N ILE A 11 O THR A 26 SHEET 3 AA1 5 VAL A 126 PRO A 134 -1 O GLY A 129 N PHE A 8 SHEET 4 AA1 5 GLY A 48 SER A 58 -1 N TYR A 49 O ILE A 132 SHEET 5 AA1 5 GLN A 90 LEU A 100 -1 O LEU A 100 N GLY A 48 SHEET 1 AA2 4 PHE A 42 VAL A 43 0 SHEET 2 AA2 4 GLN A 105 GLY A 115 -1 O VAL A 106 N PHE A 42 SHEET 3 AA2 4 ILE A 62 SER A 70 -1 N VAL A 67 O TRP A 107 SHEET 4 AA2 4 GLN A 73 ARG A 75 -1 O ARG A 75 N SER A 68 SHEET 1 AA3 4 PHE A 42 VAL A 43 0 SHEET 2 AA3 4 GLN A 105 GLY A 115 -1 O VAL A 106 N PHE A 42 SHEET 3 AA3 4 ILE A 62 SER A 70 -1 N VAL A 67 O TRP A 107 SHEET 4 AA3 4 GLY A 79 ASP A 82 -1 O PHE A 80 N LEU A 64 SHEET 1 AA4 5 ALA A 167 THR A 170 0 SHEET 2 AA4 5 VAL A 146 THR A 150 -1 N THR A 150 O ALA A 167 SHEET 3 AA4 5 VAL A 261 PRO A 269 -1 O PHE A 262 N VAL A 149 SHEET 4 AA4 5 GLY A 189 HIS A 199 -1 N LEU A 190 O LEU A 267 SHEET 5 AA4 5 GLN A 226 LEU A 236 -1 O ASN A 228 N ALA A 197 SHEET 1 AA5 5 TYR A 176 ASP A 177 0 SHEET 2 AA5 5 LYS A 182 THR A 184 -1 O LYS A 182 N ASP A 177 SHEET 3 AA5 5 GLU A 241 TYR A 250 -1 O VAL A 242 N PHE A 183 SHEET 4 AA5 5 LEU A 203 ARG A 209 -1 N TYR A 208 O TRP A 243 SHEET 5 AA5 5 VAL A 212 GLY A 219 -1 O VAL A 214 N LEU A 207 SHEET 1 AA6 5 HIS A 301 MET A 306 0 SHEET 2 AA6 5 ALA A 280 THR A 284 -1 N THR A 284 O HIS A 301 SHEET 3 AA6 5 ILE A 398 LEU A 403 -1 O PHE A 399 N ALA A 283 SHEET 4 AA6 5 GLY A 323 SER A 333 -1 N THR A 328 O SER A 400 SHEET 5 AA6 5 GLN A 363 LEU A 373 -1 O GLN A 363 N SER A 333 SHEET 1 AA7 4 PHE A 317 THR A 318 0 SHEET 2 AA7 4 ASN A 378 ASN A 387 -1 O VAL A 379 N PHE A 317 SHEET 3 AA7 4 LEU A 337 GLY A 344 -1 N GLY A 344 O ASN A 378 SHEET 4 AA7 4 ALA A 348 ASP A 356 -1 O VAL A 351 N LEU A 341 SSBOND 1 CYS A 63 CYS A 81 1555 1555 2.08 SSBOND 2 CYS A 204 CYS A 218 1555 1555 2.06 SSBOND 3 CYS A 338 CYS A 355 1555 1555 2.05 LINK ND2BASN A 37 C1 NAG A 501 1555 1555 1.51 LINK OE1 GLN A 90 CA CA A 502 1555 1555 2.29 LINK OD1 ASP A 356 CA CA A 502 1555 1555 2.31 LINK O TYR A 357 CA CA A 502 1555 1555 2.34 LINK OE1 GLN A 363 CA CA A 502 1555 1555 2.27 LINK CA CA A 502 O HOH A 793 1555 1555 2.41 LINK CA CA A 502 O HOH A 808 1555 1555 2.43 CRYST1 81.115 52.729 89.930 90.00 115.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012328 0.000000 0.005806 0.00000 SCALE2 0.000000 0.018965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012291 0.00000