PDB Short entry for 5HLF HEADER TRANSFERASE/INHIBITOR/DNA 15-JAN-16 5HLF TITLE STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A 38-MER TITLE 2 HAIRPIN TEMPLATE-PRIMER DNA APTAMER AND AN ALPHA-CARBOXYPHOSPHONATE TITLE 3 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: PR160GAG-POL; COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: PR160GAG-POL; COMPND 12 EC: 2.7.7.49; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (38-MER); COMPND 16 CHAIN: E, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630; SOURCE 22 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS DNA APTAMER, 2-O-METHYLCYTIDINE, P51, P66, TRANSFERASE, NCRTI, KEYWDS 2 NUCLEOTIDE COMPETING, INHIBITOR, TRANSFERASE-INHIBITOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.DAS,E.ARNOLD REVDAT 6 27-SEP-23 5HLF 1 HETSYN REVDAT 5 29-JUL-20 5HLF 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 11-DEC-19 5HLF 1 REMARK REVDAT 3 20-SEP-17 5HLF 1 REMARK REVDAT 2 02-MAR-16 5HLF 1 JRNL REVDAT 1 10-FEB-16 5HLF 0 JRNL AUTH N.D.MULLINS,N.M.MAGUIRE,A.FORD,K.DAS,E.ARNOLD,J.BALZARINI, JRNL AUTH 2 A.R.MAGUIRE JRNL TITL EXPLORING THE ROLE OF THE ALPHA-CARBOXYPHOSPHONATE MOIETY IN JRNL TITL 2 THE HIV-RT ACTIVITY OF ALPHA-CARBOXY NUCLEOSIDE JRNL TITL 3 PHOSPHONATES. JRNL REF ORG.BIOMOL.CHEM. V. 14 2454 2016 JRNL REFN ESSN 1477-0539 JRNL PMID 26813581 JRNL DOI 10.1039/C5OB02507A REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.6 REMARK 3 NUMBER OF REFLECTIONS : 52070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0968 - 7.7173 0.77 2603 137 0.1560 0.1864 REMARK 3 2 7.7173 - 6.1311 0.80 2650 137 0.1886 0.2579 REMARK 3 3 6.1311 - 5.3577 0.81 2663 149 0.2072 0.2896 REMARK 3 4 5.3577 - 4.8686 0.83 2756 148 0.1832 0.2151 REMARK 3 5 4.8686 - 4.5201 0.85 2781 141 0.1816 0.2423 REMARK 3 6 4.5201 - 4.2538 0.81 2665 148 0.1886 0.2506 REMARK 3 7 4.2538 - 4.0409 0.83 2731 141 0.1910 0.2351 REMARK 3 8 4.0409 - 3.8652 0.84 2777 137 0.2092 0.2806 REMARK 3 9 3.8652 - 3.7164 0.85 2806 142 0.2197 0.2296 REMARK 3 10 3.7164 - 3.5883 0.86 2798 151 0.2239 0.2984 REMARK 3 11 3.5883 - 3.4761 0.85 2796 151 0.2404 0.2427 REMARK 3 12 3.4761 - 3.3768 0.86 2835 141 0.2551 0.2928 REMARK 3 13 3.3768 - 3.2879 0.82 2664 144 0.2799 0.3759 REMARK 3 14 3.2879 - 3.2077 0.84 2753 113 0.2866 0.3395 REMARK 3 15 3.2077 - 3.1348 0.84 2749 158 0.2928 0.3428 REMARK 3 16 3.1348 - 3.0681 0.85 2804 144 0.2933 0.3311 REMARK 3 17 3.0681 - 3.0068 0.87 2845 155 0.3099 0.3775 REMARK 3 18 3.0068 - 2.9501 0.86 2829 128 0.3378 0.4124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 18045 REMARK 3 ANGLE : 1.434 24788 REMARK 3 CHIRALITY : 0.083 2698 REMARK 3 PLANARITY : 0.008 2861 REMARK 3 DIHEDRAL : 16.356 10549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5D3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 8000, 25 MM BISTRIS-PROPANE PH, REMARK 280 6.8, 75 MM BISTRIS-PROPANE PH 7.4, 50 MM AMMONIUM SULFATE, 5% REMARK 280 GLYCEROL, 5% SUCROSE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 ALA C 554 REMARK 465 GLY C 555 REMARK 465 MET D -15 REMARK 465 ALA D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 ALA D -7 REMARK 465 LEU D -6 REMARK 465 GLU D -5 REMARK 465 VAL D -4 REMARK 465 LEU D -3 REMARK 465 PHE D -2 REMARK 465 GLN D -1 REMARK 465 GLY D 0 REMARK 465 PRO D 1 REMARK 465 ILE D 2 REMARK 465 SER D 3 REMARK 465 PRO D 4 REMARK 465 ILE D 5 REMARK 465 LEU D 214 REMARK 465 THR D 215 REMARK 465 THR D 216 REMARK 465 PRO D 217 REMARK 465 ASP D 218 REMARK 465 LYS D 219 REMARK 465 LYS D 220 REMARK 465 HIS D 221 REMARK 465 GLN D 222 REMARK 465 LYS D 223 REMARK 465 GLU D 224 REMARK 465 PRO D 225 REMARK 465 GLN D 428 REMARK 465 DT E -4 REMARK 465 DA E -3 REMARK 465 DA E -2 REMARK 465 DT F -4 REMARK 465 DA F -3 REMARK 465 DA F -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 286 OG1 CG2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 THR B 216 OG1 CG2 REMARK 470 LYS C 287 CG CD CE NZ REMARK 470 GLU C 344 CB CG CD OE1 OE2 REMARK 470 ARG D 358 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR D 354 OE1 GLU D 378 1.88 REMARK 500 OE1 GLN C 23 OG1 THR C 131 1.95 REMARK 500 OH TYR D 115 O MET D 184 2.17 REMARK 500 O LEU C 80 OG1 THR C 84 2.17 REMARK 500 O VAL A 21 ND2 ASN A 57 2.17 REMARK 500 OD2 ASP A 76 NH2 ARG A 78 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 14 O4' DG E 14 C4' 0.109 REMARK 500 DA E 26 O4' DA E 26 C4' 0.056 REMARK 500 DG F 11 O4' DG F 11 C4' 0.091 REMARK 500 DG F 12 O4' DG F 12 C4' 0.065 REMARK 500 DC F 15 O4' DC F 15 C4' 0.269 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 109 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO C 25 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU C 100 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 GLN C 145 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 PHE C 346 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 PHE C 346 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT E -1 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT E 9 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG E 14 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DG E 14 C5' - C4' - O4' ANGL. DEV. = 11.3 DEGREES REMARK 500 DA E 25 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 28 O4' - C4' - C3' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG E 29 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG E 31 O4' - C4' - C3' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG F 11 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG F 11 C5' - C4' - O4' ANGL. DEV. = 7.5 DEGREES REMARK 500 DG F 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 15 C1' - O4' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 DT F 17 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG F 27 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 125.16 -35.93 REMARK 500 ASP A 17 -158.48 -115.24 REMARK 500 ASP A 113 70.49 45.85 REMARK 500 ILE A 135 72.12 -152.31 REMARK 500 MET A 184 -107.97 56.97 REMARK 500 PRO A 243 134.08 -34.25 REMARK 500 LYS A 249 140.69 -37.90 REMARK 500 ILE A 270 -28.26 -140.26 REMARK 500 LEU A 282 -12.92 -47.32 REMARK 500 LYS A 287 121.15 -37.74 REMARK 500 PRO A 321 -8.40 -50.60 REMARK 500 LYS A 347 76.94 -106.11 REMARK 500 PRO A 412 -179.01 -67.07 REMARK 500 GLN B 91 4.53 86.42 REMARK 500 ASN B 175 75.27 -115.21 REMARK 500 MET B 184 -120.17 48.96 REMARK 500 THR B 215 -80.24 -95.46 REMARK 500 LYS B 347 71.95 -115.32 REMARK 500 THR B 362 -31.81 -133.91 REMARK 500 LYS C 11 -155.61 -118.63 REMARK 500 PRO C 14 123.38 -35.62 REMARK 500 ASN C 54 79.04 -111.01 REMARK 500 TRP C 71 -162.08 -77.20 REMARK 500 ASP C 113 72.27 47.16 REMARK 500 PRO C 133 93.64 -63.03 REMARK 500 ILE C 135 68.52 -101.00 REMARK 500 MET C 184 -147.74 56.87 REMARK 500 PRO C 243 131.51 -36.26 REMARK 500 LYS C 249 149.28 -39.23 REMARK 500 THR C 286 53.84 -93.71 REMARK 500 PRO C 321 -8.79 -50.85 REMARK 500 LYS C 347 78.39 -108.22 REMARK 500 PRO C 412 -178.92 -67.73 REMARK 500 LEU C 551 -1.44 -51.87 REMARK 500 GLN D 91 5.32 86.18 REMARK 500 ASN D 136 19.74 54.53 REMARK 500 ASN D 175 74.92 -115.74 REMARK 500 MET D 184 -119.58 48.84 REMARK 500 LYS D 347 71.49 -115.29 REMARK 500 THR D 362 -30.54 -132.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE C 542 GLY C 543 141.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN C 306 14.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 111 O REMARK 620 2 ASP A 185 OD2 76.1 REMARK 620 3 64A A 602 O17 91.6 82.2 REMARK 620 4 64A A 602 O15 133.9 61.8 66.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 ASP A 443 OD2 51.9 REMARK 620 3 ASP A 549 OD1 131.1 79.2 REMARK 620 4 HOH A 701 O 156.4 150.4 71.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 443 OD1 REMARK 620 2 ASP C 443 OD2 52.3 REMARK 620 3 ASP C 549 OD1 129.8 78.4 REMARK 620 4 HOH C 701 O 117.4 94.3 69.9 REMARK 620 5 HOH C 702 O 154.0 153.7 75.6 72.8 REMARK 620 6 HOH C 703 O 81.6 120.9 140.6 74.4 78.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D3G RELATED DB: PDB REMARK 900 RELATED ID: 4R5P RELATED DB: PDB REMARK 900 RELATED ID: 3V4I RELATED DB: PDB REMARK 900 RELATED ID: 5HP1 RELATED DB: PDB DBREF 5HLF A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 5HLF B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 5HLF C 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 5HLF D 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 5HLF E -4 33 PDB 5HLF 5HLF -4 33 DBREF 5HLF F -4 33 PDB 5HLF 5HLF -4 33 SEQADV 5HLF SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HLF MET B -15 UNP P03366 INITIATING METHIONINE SEQADV 5HLF ALA B -14 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -13 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -12 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -11 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -10 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -9 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS B -8 UNP P03366 EXPRESSION TAG SEQADV 5HLF ALA B -7 UNP P03366 EXPRESSION TAG SEQADV 5HLF LEU B -6 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLU B -5 UNP P03366 EXPRESSION TAG SEQADV 5HLF VAL B -4 UNP P03366 EXPRESSION TAG SEQADV 5HLF LEU B -3 UNP P03366 EXPRESSION TAG SEQADV 5HLF PHE B -2 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLN B -1 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLY B 0 UNP P03366 EXPRESSION TAG SEQADV 5HLF SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HLF SER C 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HLF MET D -15 UNP P03366 INITIATING METHIONINE SEQADV 5HLF ALA D -14 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -13 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -12 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -11 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -10 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -9 UNP P03366 EXPRESSION TAG SEQADV 5HLF HIS D -8 UNP P03366 EXPRESSION TAG SEQADV 5HLF ALA D -7 UNP P03366 EXPRESSION TAG SEQADV 5HLF LEU D -6 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLU D -5 UNP P03366 EXPRESSION TAG SEQADV 5HLF VAL D -4 UNP P03366 EXPRESSION TAG SEQADV 5HLF LEU D -3 UNP P03366 EXPRESSION TAG SEQADV 5HLF PHE D -2 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLN D -1 UNP P03366 EXPRESSION TAG SEQADV 5HLF GLY D 0 UNP P03366 EXPRESSION TAG SEQADV 5HLF SER D 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 555 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 555 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 555 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 555 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 555 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 555 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 555 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 555 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 555 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 555 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 555 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 555 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 555 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 555 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 555 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 555 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 555 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 555 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 555 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 555 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 555 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 555 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 555 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 555 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 555 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 555 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 555 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 555 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 555 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 555 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 555 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 555 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 555 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 555 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 555 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 555 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 555 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 555 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 555 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 555 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 555 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 555 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 555 GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 C 555 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 C 555 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 C 555 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 C 555 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 C 555 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 C 555 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 C 555 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 C 555 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 C 555 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 C 555 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 C 555 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 C 555 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 C 555 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 C 555 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 C 555 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 C 555 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 C 555 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 C 555 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 C 555 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 C 555 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 C 555 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 C 555 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 C 555 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 C 555 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 C 555 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 C 555 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 C 555 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 C 555 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 C 555 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 C 555 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 C 555 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 C 555 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 C 555 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 C 555 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 C 555 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 C 555 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 C 555 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 C 555 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 C 555 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 C 555 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 C 555 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 C 555 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 C 555 GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 D 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 D 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 D 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 D 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 D 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 D 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 D 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 D 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 D 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 D 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 D 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 D 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 D 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 D 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 D 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 D 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 D 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 D 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 D 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 D 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 D 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 D 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 D 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU SEQRES 24 D 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 D 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 D 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 D 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 D 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 D 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 D 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 D 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 D 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 D 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 D 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 D 444 TYR GLN SEQRES 1 E 38 DT DA DA DT DA DC OMC DC OMC DC DC DC DT SEQRES 2 E 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 E 38 DC DC DG DA DA DG DG DG DG DG DG DG SEQRES 1 F 38 DT DA DA DT DA DC OMC DC OMC DC DC DC DT SEQRES 2 F 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 F 38 DC DC DG DA DA DG DG DG DG DG DG DG HET OMC E 2 21 HET OMC E 4 21 HET OMC F 2 21 HET OMC F 4 21 HET GLC G 1 11 HET FRU G 2 12 HET GLC H 1 11 HET FRU H 2 12 HET MG A 601 1 HET 64A A 602 22 HET MG A 603 1 HET SO4 A 604 5 HET GOL A 605 6 HET GOL B2002 6 HET GOL B2003 6 HET GOL B2004 6 HET GOL B2005 6 HET GOL B2006 6 HET MG C 601 1 HET SO4 C 602 5 HET GOL C 603 6 HET GOL D 502 6 HET GOL D 503 6 HET GOL D 504 6 HET GOL D 505 6 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM MG MAGNESIUM ION HETNAM 64A {[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN- HETNAM 2 64A 1(2H)-YL)CYCLOPENTYL]OXY}PROPANEDIOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 OMC 4(C10 H16 N3 O8 P) FORMUL 7 GLC 2(C6 H12 O6) FORMUL 7 FRU 2(C6 H12 O6) FORMUL 9 MG 3(MG 2+) FORMUL 10 64A C13 H16 N2 O7 FORMUL 12 SO4 2(O4 S 2-) FORMUL 13 GOL 11(C3 H8 O3) FORMUL 26 HOH *5(H2 O) HELIX 1 AA1 THR A 27 GLY A 45 1 19 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 GLU A 122 ALA A 129 5 8 HELIX 6 AA6 GLY A 155 GLN A 174 1 20 HELIX 7 AA7 GLU A 194 TRP A 212 1 19 HELIX 8 AA8 PRO A 217 HIS A 221 5 5 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 282 1 7 HELIX 11 AB2 THR A 296 GLU A 312 1 17 HELIX 12 AB3 ASN A 363 TRP A 383 1 21 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 ASP A 488 1 16 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 GLY A 544 LYS A 550 1 7 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 THR B 84 1 8 HELIX 20 AC2 ASP B 86 GLN B 91 1 6 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 ASP B 121 LYS B 126 1 6 HELIX 24 AC6 TYR B 127 ALA B 129 5 3 HELIX 25 AC7 SER B 134 GLU B 138 5 5 HELIX 26 AC8 LYS B 154 ASN B 175 1 22 HELIX 27 AC9 GLU B 194 THR B 215 1 22 HELIX 28 AD1 HIS B 235 TRP B 239 5 5 HELIX 29 AD2 THR B 253 SER B 268 1 16 HELIX 30 AD3 VAL B 276 LEU B 282 1 7 HELIX 31 AD4 THR B 296 GLU B 312 1 17 HELIX 32 AD5 ASN B 363 GLY B 384 1 22 HELIX 33 AD6 GLN B 394 TRP B 402 1 9 HELIX 34 AD7 THR B 403 TYR B 405 5 3 HELIX 35 AD8 LYS C 30 GLY C 45 1 16 HELIX 36 AD9 PHE C 77 THR C 84 1 8 HELIX 37 AE1 HIS C 96 LEU C 100 5 5 HELIX 38 AE2 ALA C 114 VAL C 118 5 5 HELIX 39 AE3 ASP C 121 LYS C 126 1 6 HELIX 40 AE4 TYR C 127 ALA C 129 5 3 HELIX 41 AE5 GLY C 155 GLN C 174 1 20 HELIX 42 AE6 GLU C 194 ARG C 211 1 18 HELIX 43 AE7 PRO C 217 HIS C 221 5 5 HELIX 44 AE8 THR C 253 SER C 268 1 16 HELIX 45 AE9 VAL C 276 LEU C 283 1 8 HELIX 46 AF1 THR C 296 GLU C 312 1 17 HELIX 47 AF2 ASN C 363 GLY C 384 1 22 HELIX 48 AF3 GLN C 394 TYR C 405 1 12 HELIX 49 AF4 THR C 473 ASP C 488 1 16 HELIX 50 AF5 SER C 499 ALA C 508 1 10 HELIX 51 AF6 SER C 515 LYS C 528 1 14 HELIX 52 AF7 ILE C 542 LEU C 551 1 10 HELIX 53 AF8 THR D 27 GLU D 44 1 18 HELIX 54 AF9 PHE D 77 THR D 84 1 8 HELIX 55 AG1 GLY D 99 LYS D 103 5 5 HELIX 56 AG2 GLY D 112 VAL D 118 5 7 HELIX 57 AG3 ASP D 121 LYS D 126 1 6 HELIX 58 AG4 TYR D 127 ALA D 129 5 3 HELIX 59 AG5 SER D 134 GLU D 138 5 5 HELIX 60 AG6 LYS D 154 ASN D 175 1 22 HELIX 61 AG7 GLU D 194 GLY D 213 1 20 HELIX 62 AG8 HIS D 235 TRP D 239 5 5 HELIX 63 AG9 THR D 253 SER D 268 1 16 HELIX 64 AH1 VAL D 276 LEU D 282 1 7 HELIX 65 AH2 THR D 296 GLU D 312 1 17 HELIX 66 AH3 ASN D 363 GLY D 384 1 22 HELIX 67 AH4 GLN D 394 TRP D 402 1 9 HELIX 68 AH5 THR D 403 TYR D 405 5 3 SHEET 1 AA1 3 ILE A 47 SER A 48 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 ASN A 348 TYR A 354 0 SHEET 2 AA5 5 TRP A 337 TYR A 342 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 LYS A 331 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 THR A 470 0 SHEET 2 AA7 5 LEU A 452 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N ALA A 445 O LYS A 454 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N SER B 105 O SER B 191 SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 5 LYS B 347 ALA B 355 0 SHEET 2 AB2 5 GLN B 336 GLU B 344 -1 N TRP B 337 O TYR B 354 SHEET 3 AB2 5 ILE B 326 GLY B 333 -1 N GLN B 332 O GLN B 336 SHEET 4 AB2 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB2 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 SHEET 1 AB3 2 ILE C 47 LYS C 49 0 SHEET 2 AB3 2 TYR C 144 TYR C 146 -1 O GLN C 145 N SER C 48 SHEET 1 AB4 2 VAL C 60 PHE C 61 0 SHEET 2 AB4 2 LEU C 74 VAL C 75 -1 O LEU C 74 N PHE C 61 SHEET 1 AB5 3 SER C 105 ASP C 110 0 SHEET 2 AB5 3 ASP C 186 SER C 191 -1 O SER C 191 N SER C 105 SHEET 3 AB5 3 VAL C 179 TYR C 183 -1 N TYR C 181 O TYR C 188 SHEET 1 AB6 3 PHE C 227 TRP C 229 0 SHEET 2 AB6 3 TYR C 232 LEU C 234 -1 O TYR C 232 N TRP C 229 SHEET 3 AB6 3 TRP C 239 VAL C 241 -1 O THR C 240 N GLU C 233 SHEET 1 AB7 5 LYS C 347 TYR C 354 0 SHEET 2 AB7 5 TRP C 337 GLU C 344 -1 N TYR C 339 O GLY C 352 SHEET 3 AB7 5 ILE C 326 LYS C 331 -1 N GLN C 330 O THR C 338 SHEET 4 AB7 5 LYS C 388 LEU C 391 1 O LYS C 388 N ALA C 327 SHEET 5 AB7 5 TRP C 414 PHE C 416 1 O GLU C 415 N LEU C 391 SHEET 1 AB8 2 HIS C 361 THR C 362 0 SHEET 2 AB8 2 LYS C 512 SER C 513 -1 O LYS C 512 N THR C 362 SHEET 1 AB9 5 GLN C 464 THR C 470 0 SHEET 2 AB9 5 LEU C 452 THR C 459 -1 N ALA C 455 O VAL C 467 SHEET 3 AB9 5 GLU C 438 ALA C 446 -1 N ALA C 445 O LYS C 454 SHEET 4 AB9 5 GLU C 492 THR C 497 1 O ASN C 494 N PHE C 440 SHEET 5 AB9 5 LYS C 530 TRP C 535 1 O TYR C 532 N ILE C 495 SHEET 1 AC1 3 ILE D 47 LYS D 49 0 SHEET 2 AC1 3 ILE D 142 TYR D 146 -1 O GLN D 145 N SER D 48 SHEET 3 AC1 3 PHE D 130 ILE D 132 -1 N ILE D 132 O ILE D 142 SHEET 1 AC2 2 VAL D 60 LYS D 64 0 SHEET 2 AC2 2 TRP D 71 VAL D 75 -1 O LEU D 74 N PHE D 61 SHEET 1 AC3 4 VAL D 179 TYR D 183 0 SHEET 2 AC3 4 ASP D 186 SER D 191 -1 O TYR D 188 N TYR D 181 SHEET 3 AC3 4 SER D 105 ASP D 110 -1 N SER D 105 O SER D 191 SHEET 4 AC3 4 TYR D 232 LEU D 234 -1 O LEU D 234 N VAL D 106 SHEET 1 AC4 5 LYS D 347 ALA D 355 0 SHEET 2 AC4 5 GLN D 336 GLU D 344 -1 N ILE D 341 O LYS D 350 SHEET 3 AC4 5 ILE D 326 GLY D 333 -1 N GLN D 330 O THR D 338 SHEET 4 AC4 5 LYS D 388 PRO D 392 1 O LYS D 390 N ALA D 327 SHEET 5 AC4 5 TRP D 414 VAL D 417 1 O GLU D 415 N LEU D 391 LINK O3' DC E 1 P OMC E 2 1555 1555 1.61 LINK O3' OMC E 2 P DC E 3 1555 1555 1.61 LINK O3' DC E 3 P OMC E 4 1555 1555 1.61 LINK O3' OMC E 4 P DC E 5 1555 1555 1.61 LINK O3' DC F 1 P OMC F 2 1555 1555 1.60 LINK O3' OMC F 2 P DC F 3 1555 1555 1.61 LINK O3' DC F 3 P OMC F 4 1555 1555 1.61 LINK O3' OMC F 4 P DC F 5 1555 1555 1.61 LINK C1 GLC G 1 O2 FRU G 2 1555 1555 1.42 LINK C1 GLC H 1 O2 FRU H 2 1555 1555 1.42 LINK O VAL A 111 MG MG A 601 1555 1555 2.31 LINK OD2 ASP A 185 MG MG A 601 1555 1555 2.53 LINK OD1 ASP A 443 MG MG A 603 1555 1555 2.73 LINK OD2 ASP A 443 MG MG A 603 1555 1555 1.89 LINK OD1 ASP A 549 MG MG A 603 1555 1555 2.60 LINK MG MG A 601 O17 64A A 602 1555 1555 2.42 LINK MG MG A 601 O15 64A A 602 1555 1555 2.17 LINK MG MG A 603 O HOH A 701 1555 1555 2.12 LINK OD1 ASP C 443 MG MG C 601 1555 1555 2.64 LINK OD2 ASP C 443 MG MG C 601 1555 1555 2.19 LINK OD1 ASP C 549 MG MG C 601 1555 1555 2.50 LINK MG MG C 601 O HOH C 701 1555 1555 2.06 LINK MG MG C 601 O HOH C 702 1555 1555 2.12 LINK MG MG C 601 O HOH C 703 1555 1555 2.07 CISPEP 1 PRO A 225 PRO A 226 0 3.43 CISPEP 2 PRO A 420 PRO A 421 0 -0.74 CISPEP 3 PRO C 225 PRO C 226 0 3.23 CISPEP 4 PRO C 420 PRO C 421 0 -2.38 CRYST1 90.060 128.560 132.410 90.00 101.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011104 0.000000 0.002251 0.00000 SCALE2 0.000000 0.007778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007706 0.00000