PDB Short entry for 5HNX HEADER STRUCTURAL PROTEIN/MOTOR PROTEIN 19-JAN-16 5HNX TITLE STRUCTURAL BASIS OF BACKWARDS MOTION IN KINESIN-14: MINUS-END DIRECTED TITLE 2 NKN664 IN THE NUCLEOTIDE-FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN ALPHA-1B CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA- COMPND 5 UBIQUITOUS CHAIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUBULIN BETA-2B CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: BETA-TUBULIN; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN CLARET SEGREGATIONAL,KINESIN-1/KINESIN-14,PROTEIN COMPND 12 CLARET SEGREGATIONAL; COMPND 13 CHAIN: K; COMPND 14 FRAGMENT: UNP RESIDUES 325-348,UNP RESIDUES 664-700; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: BOVINE; SOURCE 8 ORGANISM_TAXID: 9913; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER, RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: FRUIT FLY, RAT; SOURCE 12 ORGANISM_TAXID: 7227, 10116; SOURCE 13 GENE: NCD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINESIN, KINESIN-14, MICROTUBULE, ATPASE, STRUCTURAL PROTEIN-MOTOR KEYWDS 2 PROTEIN COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR H.SHIGEMATSU,T.YOKOYAMA,M.KIKKAWA,M.SHIROUZU,R.NITTA REVDAT 4 27-MAR-24 5HNX 1 REMARK REVDAT 3 07-SEP-16 5HNX 1 REMARK REVDAT 2 17-AUG-16 5HNX 1 JRNL REVDAT 1 10-AUG-16 5HNX 0 JRNL AUTH M.YAMAGISHI,H.SHIGEMATSU,T.YOKOYAMA,M.KIKKAWA,M.SUGAWA, JRNL AUTH 2 M.AOKI,M.SHIROUZU,J.YAJIMA,R.NITTA JRNL TITL STRUCTURAL BASIS OF BACKWARDS MOTION IN KINESIN-1-KINESIN-14 JRNL TITL 2 CHIMERA: IMPLICATION FOR KINESIN-14 MOTILITY JRNL REF STRUCTURE V. 24 1322 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27452403 JRNL DOI 10.1016/J.STR.2016.05.021 REMARK 2 REMARK 2 RESOLUTION. 6.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.600 REMARK 3 NUMBER OF PARTICLES : 229516 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: HIGH-RESOLUTION NOISE SUBSTITUTION WAS PERFORMED REMARK 4 REMARK 4 5HNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217407. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : MINUS-END DIRECTED NCD CHIMERA REMARK 245 NKN664 IN THE AMPPNP STATE COMPLEXED WITH GDP-TAXOL MICROTUBULE; REMARK 245 TUBULIN ALPHA-1B CHAIN; TUBULIN BETA-2B CHAIN; PROTEIN CLARET REMARK 245 SEGREGATIONAL,KINESIN-1/KINESIN-14,PROTEIN CLARET SEGREGATIONAL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 35 REMARK 465 MET A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ASP A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 SER A 48 REMARK 465 PHE A 49 REMARK 465 ASN A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 PHE A 53 REMARK 465 SER A 54 REMARK 465 GLU A 55 REMARK 465 THR A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 VAL A 440 REMARK 465 GLU A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 447 REMARK 465 GLY A 448 REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 TYR A 451 REMARK 465 MET B 1 REMARK 465 ALA B 438 REMARK 465 THR B 439 REMARK 465 ALA B 440 REMARK 465 ASP B 441 REMARK 465 GLU B 442 REMARK 465 GLN B 443 REMARK 465 GLY B 444 REMARK 465 GLU B 445 REMARK 465 PHE B 446 REMARK 465 GLU B 447 REMARK 465 GLU B 448 REMARK 465 GLU B 449 REMARK 465 GLU B 450 REMARK 465 GLY B 451 REMARK 465 GLU B 452 REMARK 465 ASP B 453 REMARK 465 GLU B 454 REMARK 465 ALA B 455 REMARK 465 LYS K 1 REMARK 465 GLU K 2 REMARK 465 GLN K 3 REMARK 465 LEU K 4 REMARK 465 PHE K 5 REMARK 465 GLN K 6 REMARK 465 SER K 7 REMARK 465 ASN K 8 REMARK 465 MET K 9 REMARK 465 GLU K 10 REMARK 465 ARG K 11 REMARK 465 LYS K 12 REMARK 465 GLU K 13 REMARK 465 LEU K 14 REMARK 465 HIS K 15 REMARK 465 ASN K 16 REMARK 465 THR K 17 REMARK 465 VAL K 18 REMARK 465 MET K 19 REMARK 465 ASP K 20 REMARK 465 LEU K 21 REMARK 465 LYS K 342 REMARK 465 MET K 343 REMARK 465 THR K 344 REMARK 465 LYS K 345 REMARK 465 ALA K 346 REMARK 465 LYS K 347 REMARK 465 ARG K 348 REMARK 465 ASN K 349 REMARK 465 ARG K 350 REMARK 465 TYR K 351 REMARK 465 LEU K 352 REMARK 465 ASN K 353 REMARK 465 ASN K 354 REMARK 465 SER K 355 REMARK 465 VAL K 356 REMARK 465 ALA K 357 REMARK 465 ASN K 358 REMARK 465 SER K 359 REMARK 465 SER K 360 REMARK 465 THR K 361 REMARK 465 GLN K 362 REMARK 465 SER K 363 REMARK 465 ASN K 364 REMARK 465 ASN K 365 REMARK 465 SER K 366 REMARK 465 GLY K 367 REMARK 465 SER K 368 REMARK 465 PHE K 369 REMARK 465 ASP K 370 REMARK 465 LYS K 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS K 184 SG REMARK 470 CYS K 310 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN A 11 O1B GTP A 502 1.94 REMARK 500 OE1 GLN B 434 CB HIS K 290 1.96 REMARK 500 O GLN B 281 N TYR B 283 2.00 REMARK 500 O PHE K 45 NZ LYS K 48 2.05 REMARK 500 O ARG A 264 N HIS A 266 2.09 REMARK 500 CD GLN B 434 CB HIS K 290 2.10 REMARK 500 ND1 HIS B 192 OD1 ASN B 424 2.18 REMARK 500 CE MET B 416 CB GLU K 173 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO K 69 CD PRO K 69 N 0.351 REMARK 500 PRO K 70 CD PRO K 70 N 0.296 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 173 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 MET B 235 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO B 263 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO K 69 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 ASN K 168 CA - C - N ANGL. DEV. = 17.8 DEGREES REMARK 500 ASN K 168 O - C - N ANGL. DEV. = -20.4 DEGREES REMARK 500 CYS K 310 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 -38.37 -38.57 REMARK 500 TYR A 24 -79.97 -51.78 REMARK 500 GLN A 31 -179.91 -53.23 REMARK 500 PRO A 32 -59.04 -29.61 REMARK 500 PRO A 63 -153.16 -59.20 REMARK 500 ARG A 64 44.37 -166.16 REMARK 500 PRO A 89 3.96 -52.79 REMARK 500 LYS A 96 -27.08 -27.04 REMARK 500 GLU A 97 -131.68 -51.35 REMARK 500 ALA A 100 112.28 73.91 REMARK 500 ASN A 101 43.65 -73.63 REMARK 500 TYR A 103 -79.59 -38.57 REMARK 500 ALA A 104 -70.12 -21.30 REMARK 500 HIS A 107 -70.11 -79.43 REMARK 500 TYR A 108 -116.89 -70.85 REMARK 500 THR A 109 -94.36 -11.59 REMARK 500 ILE A 110 -70.70 -67.58 REMARK 500 GLU A 113 -38.86 -39.74 REMARK 500 ASP A 116 -73.06 -39.97 REMARK 500 CYS A 129 -164.55 -67.35 REMARK 500 SER A 140 65.54 -112.32 REMARK 500 PHE A 141 -67.95 11.62 REMARK 500 SER A 147 -70.34 -81.84 REMARK 500 PHE A 149 -74.52 -26.98 REMARK 500 SER A 158 -18.43 -48.58 REMARK 500 TYR A 161 43.78 -147.03 REMARK 500 LYS A 163 44.26 -82.03 REMARK 500 PRO A 173 120.02 -23.29 REMARK 500 GLN A 176 -21.23 -144.28 REMARK 500 VAL A 177 57.54 -103.85 REMARK 500 THR A 179 -77.66 -115.98 REMARK 500 GLU A 183 -63.86 6.89 REMARK 500 HIS A 197 -24.35 -140.80 REMARK 500 ALA A 208 -5.82 -53.72 REMARK 500 LEU A 217 -23.53 176.53 REMARK 500 ASP A 218 104.01 56.10 REMARK 500 ILE A 219 118.98 179.84 REMARK 500 ARG A 221 56.44 -113.52 REMARK 500 THR A 225 -9.23 -54.01 REMARK 500 GLN A 233 -62.68 -97.66 REMARK 500 ILE A 238 -87.88 -73.44 REMARK 500 THR A 239 -86.80 -66.75 REMARK 500 ALA A 240 -90.30 -10.73 REMARK 500 ASP A 245 157.43 -39.93 REMARK 500 LEU A 248 43.36 -156.43 REMARK 500 ASN A 249 148.47 -29.26 REMARK 500 GLU A 254 -53.89 -27.86 REMARK 500 PHE A 255 -88.06 -47.88 REMARK 500 PRO A 263 -31.16 -30.67 REMARK 500 HIS A 266 136.72 -11.42 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG K 22 GLY K 23 -124.40 REMARK 500 ASN K 168 LEU K 169 -144.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN K 168 -10.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TA1 B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8059 RELATED DB: EMDB REMARK 900 RELATED ID: 5HNW RELATED DB: PDB REMARK 900 RELATED ID: 5HNY RELATED DB: PDB REMARK 900 RELATED ID: 5HNZ RELATED DB: PDB DBREF 5HNX A 1 451 UNP P81947 TBA1B_BOVIN 1 451 DBREF 5HNX B 1 455 UNP Q6B856 TBB2B_BOVIN 1 445 DBREF 5HNX K 1 24 UNP P20480 NCD_DROME 325 348 DBREF 5HNX K 25 334 PDB 5HNX 5HNX 25 334 DBREF 5HNX K 335 371 UNP P20480 NCD_DROME 664 700 SEQADV 5HNX SER A 136 UNP P81947 LEU 136 CONFLICT SEQADV 5HNX GLY A 232 UNP P81947 SER 232 CONFLICT SEQADV 5HNX GLY A 265 UNP P81947 ILE 265 CONFLICT SEQADV 5HNX THR A 340 UNP P81947 SER 340 CONFLICT SEQADV 5HNX GLU A 358 UNP P81947 GLN 358 CONFLICT SEQADV 5HNX ALA B 57 UNP Q6B856 THR 55 CONFLICT SEQADV 5HNX VAL B 172 UNP Q6B856 MET 170 CONFLICT SEQADV 5HNX ALA B 298 UNP Q6B856 SER 296 CONFLICT SEQADV 5HNX VAL B 318 UNP Q6B856 ILE 316 CONFLICT SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR SEQRES 11 A 451 GLY LEU GLN GLY PHE SER VAL PHE HIS SER PHE GLY GLY SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE GLY GLN ILE SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL SEQRES 21 A 451 PRO TYR PRO ARG GLY HIS PHE PRO LEU ALA THR TYR ALA SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS SEQRES 27 A 451 ARG THR ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLU PRO PRO THR VAL VAL PRO SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN SEQRES 5 B 445 GLU ALA ALA GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL SEQRES 14 B 445 VAL PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP ALA LYS ASN MET SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR SEQRES 25 B 445 VAL ALA ALA VAL PHE ARG GLY ARG MET SER MET LYS GLU SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLU GLY GLU SEQRES 35 B 445 ASP GLU ALA SEQRES 1 K 371 LYS GLU GLN LEU PHE GLN SER ASN MET GLU ARG LYS GLU SEQRES 2 K 371 LEU HIS ASN THR VAL MET ASP LEU ARG GLY ASN ILE LYS SEQRES 3 K 371 VAL MET CYS ARG PHE ARG PRO LEU ASN GLU ALA GLU ILE SEQRES 4 K 371 LEU ARG GLY ASP LYS PHE ILE PRO LYS PHE LYS GLY GLU SEQRES 5 K 371 GLU THR VAL VAL ILE GLN GLY LYS PRO TYR VAL PHE ASP SEQRES 6 K 371 ARG VAL LEU PRO PRO ASN THR THR GLN GLU GLN VAL TYR SEQRES 7 K 371 ASN ALA CYS ALA LYS GLN ILE VAL LYS ASP VAL LEU GLU SEQRES 8 K 371 GLY TYR ASN GLY THR ILE PHE ALA TYR GLY GLN THR SER SEQRES 9 K 371 SER GLY LYS THR HIS THR MET GLU GLY LYS LEU HIS ASP SEQRES 10 K 371 PRO GLN LEU MET GLY ILE ILE PRO ARG ILE ALA HIS ASP SEQRES 11 K 371 ILE PHE ASP HIS ILE TYR SER MET ASP GLU ASN LEU GLU SEQRES 12 K 371 PHE ALA ILE LYS VAL SER TYR PHE GLU ILE TYR LEU ASP SEQRES 13 K 371 LYS ILE ARG ASP LEU LEU ASP VAL SER LYS THR ASN LEU SEQRES 14 K 371 ALA VAL HIS GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS SEQRES 15 K 371 GLY CYS THR GLU ARG PHE VAL SER SER PRO GLU GLU VAL SEQRES 16 K 371 MET ASP VAL ILE ASP GLU GLY LYS SER ASN ARG HIS VAL SEQRES 17 K 371 ALA VAL THR ASN MET ASN GLU HIS SER SER ARG SER HIS SEQRES 18 K 371 SER ILE PHE LEU ILE ASN ILE LYS GLN GLU ASN VAL GLU SEQRES 19 K 371 THR GLU LYS LYS LEU SER GLY LYS LEU TYR LEU VAL ASP SEQRES 20 K 371 LEU ALA GLY SER GLU LYS VAL SER LYS THR GLY ALA GLU SEQRES 21 K 371 GLY ALA VAL LEU ASP GLU ALA LYS ASN ILE ASN LYS SER SEQRES 22 K 371 LEU SER ALA LEU GLY ASN VAL ILE SER ALA LEU ALA GLU SEQRES 23 K 371 GLY THR THR HIS VAL PRO TYR ARG ASP SER LYS MET THR SEQRES 24 K 371 ARG ILE LEU GLN ASP SER LEU GLY GLY ASN CYS ARG THR SEQRES 25 K 371 THR ILE VAL ILE CYS CYS SER PRO SER VAL PHE ASN GLU SEQRES 26 K 371 ALA GLU THR LYS SER THR LEU MET PHE ALA ALA SER VAL SEQRES 27 K 371 ASN SER CYS LYS MET THR LYS ALA LYS ARG ASN ARG TYR SEQRES 28 K 371 LEU ASN ASN SER VAL ALA ASN SER SER THR GLN SER ASN SEQRES 29 K 371 ASN SER GLY SER PHE ASP LYS HET MG A 501 1 HET GTP A 502 32 HET GDP B 901 28 HET TA1 B 902 62 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM TA1 TAXOL FORMUL 4 MG MG 2+ FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 GDP C10 H15 N5 O11 P2 FORMUL 7 TA1 C47 H51 N O14 HELIX 1 AA1 GLY A 10 GLU A 27 1 18 HELIX 2 AA2 GLU A 71 GLY A 81 1 11 HELIX 3 AA3 ASN A 102 TYR A 108 1 7 HELIX 4 AA4 TYR A 108 CYS A 129 1 22 HELIX 5 AA5 SER A 147 TYR A 161 1 15 HELIX 6 AA6 GLU A 183 LEU A 195 1 13 HELIX 7 AA7 ASP A 205 ASN A 216 1 12 HELIX 8 AA8 THR A 223 ARG A 243 1 21 HELIX 9 AA9 ASP A 251 VAL A 260 1 10 HELIX 10 AB1 SER A 287 THR A 292 1 6 HELIX 11 AB2 THR A 292 GLU A 297 1 6 HELIX 12 AB3 VAL A 324 THR A 337 1 14 HELIX 13 AB4 ILE A 384 ALA A 400 1 17 HELIX 14 AB5 LYS A 401 PHE A 404 5 4 HELIX 15 AB6 VAL A 405 GLY A 410 1 6 HELIX 16 AB7 GLU A 414 LYS A 430 1 17 HELIX 17 AB8 LYS A 430 VAL A 435 1 6 HELIX 18 AB9 GLN B 11 GLU B 27 1 17 HELIX 19 AC1 ARG B 48 TYR B 53 5 6 HELIX 20 AC2 GLU B 71 ARG B 79 1 9 HELIX 21 AC3 PRO B 82 ILE B 86 5 5 HELIX 22 AC4 ARG B 88 ASP B 90 5 3 HELIX 23 AC5 GLU B 110 GLU B 127 1 18 HELIX 24 AC6 GLY B 143 TYR B 161 1 19 HELIX 25 AC7 GLU B 183 VAL B 195 1 13 HELIX 26 AC8 ASP B 205 ARG B 215 1 11 HELIX 27 AC9 THR B 223 ARG B 243 1 21 HELIX 28 AD1 ASP B 251 VAL B 260 1 10 HELIX 29 AD2 VAL B 288 PHE B 296 1 9 HELIX 30 AD3 ASP B 306 GLY B 310 5 5 HELIX 31 AD4 SER B 324 ASN B 339 1 16 HELIX 32 AD5 ILE B 384 ARG B 400 1 17 HELIX 33 AD6 LYS B 402 PHE B 404 5 3 HELIX 34 AD7 LEU B 405 GLY B 410 1 6 HELIX 35 AD8 ASP B 414 ASP B 437 1 24 HELIX 36 AD9 THR K 73 ALA K 82 1 10 HELIX 37 AE1 ALA K 82 GLU K 91 1 10 HELIX 38 AE2 GLY K 106 GLU K 112 1 7 HELIX 39 AE3 ILE K 123 ILE K 135 1 13 HELIX 40 AE4 SER K 191 SER K 204 1 14 HELIX 41 AE5 GLY K 261 GLU K 286 1 26 HELIX 42 AE6 PRO K 292 ASP K 295 5 4 HELIX 43 AE7 SER K 296 LEU K 302 1 7 HELIX 44 AE8 LEU K 302 GLY K 307 1 6 HELIX 45 AE9 ASN K 324 ALA K 335 1 12 SHEET 1 AA1 6 LEU A 92 THR A 94 0 SHEET 2 AA1 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93 SHEET 3 AA1 6 CYS A 4 VAL A 9 1 N SER A 6 O VAL A 66 SHEET 4 AA1 6 GLY A 134 HIS A 139 1 O SER A 136 N ILE A 5 SHEET 5 AA1 6 LEU A 167 SER A 170 1 O PHE A 169 N VAL A 137 SHEET 6 AA1 6 CYS A 200 MET A 203 1 O PHE A 202 N SER A 170 SHEET 1 AA2 4 LEU A 269 THR A 271 0 SHEET 2 AA2 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269 SHEET 3 AA2 4 TYR A 312 GLY A 321 -1 N CYS A 316 O LEU A 378 SHEET 4 AA2 4 PHE A 351 ILE A 355 1 O GLY A 354 N TYR A 319 SHEET 1 AA310 PHE B 92 PHE B 94 0 SHEET 2 AA310 ALA B 65 ASP B 69 1 N LEU B 67 O VAL B 93 SHEET 3 AA310 HIS B 6 ALA B 9 1 N GLN B 8 O ILE B 66 SHEET 4 AA310 GLY B 134 HIS B 139 1 O THR B 138 N ILE B 7 SHEET 5 AA310 ILE B 165 SER B 170 1 O PHE B 169 N LEU B 137 SHEET 6 AA310 GLU B 200 TYR B 202 1 O TYR B 202 N THR B 168 SHEET 7 AA310 PHE B 267 GLY B 271 1 O PHE B 268 N THR B 201 SHEET 8 AA310 ALA B 375 SER B 381 -1 O PHE B 377 N GLY B 271 SHEET 9 AA310 TYR B 312 ARG B 320 -1 N VAL B 318 O THR B 376 SHEET 10 AA310 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319 SHEET 1 AA4 8 ARG K 66 LEU K 68 0 SHEET 2 AA4 8 LYS K 26 PHE K 31 1 N CYS K 29 O LEU K 68 SHEET 3 AA4 8 THR K 313 CYS K 318 1 O ILE K 314 N MET K 28 SHEET 4 AA4 8 GLY K 95 TYR K 100 1 N PHE K 98 O VAL K 315 SHEET 5 AA4 8 LYS K 238 LEU K 248 1 O VAL K 246 N ILE K 97 SHEET 6 AA4 8 HIS K 221 ASN K 232 -1 N PHE K 224 O LEU K 245 SHEET 7 AA4 8 LEU K 142 TYR K 154 -1 N SER K 149 O LEU K 225 SHEET 8 AA4 8 LYS K 157 ASP K 160 -1 O ARG K 159 N GLU K 152 SHEET 1 AA5 8 ARG K 66 LEU K 68 0 SHEET 2 AA5 8 LYS K 26 PHE K 31 1 N CYS K 29 O LEU K 68 SHEET 3 AA5 8 THR K 313 CYS K 318 1 O ILE K 314 N MET K 28 SHEET 4 AA5 8 GLY K 95 TYR K 100 1 N PHE K 98 O VAL K 315 SHEET 5 AA5 8 LYS K 238 LEU K 248 1 O VAL K 246 N ILE K 97 SHEET 6 AA5 8 HIS K 221 ASN K 232 -1 N PHE K 224 O LEU K 245 SHEET 7 AA5 8 LEU K 142 TYR K 154 -1 N SER K 149 O LEU K 225 SHEET 8 AA5 8 ARG K 187 PHE K 188 -1 O ARG K 187 N VAL K 148 SHEET 1 AA6 2 VAL K 171 GLU K 173 0 SHEET 2 AA6 2 PRO K 179 VAL K 181 -1 O TYR K 180 N HIS K 172 SHEET 1 AA7 2 VAL K 208 ALA K 209 0 SHEET 2 AA7 2 SER K 217 SER K 218 -1 O SER K 217 N ALA K 209 LINK MG MG A 501 O1G GTP A 502 1555 1555 2.45 CISPEP 1 SER K 340 CYS K 341 0 -0.07 SITE 1 AC1 5 GLN A 11 ASP A 69 GLU A 71 VAL A 74 SITE 2 AC1 5 GTP A 502 SITE 1 AC2 17 GLY A 10 GLN A 11 ALA A 12 GLN A 15 SITE 2 AC2 17 ALA A 99 ASN A 101 SER A 140 GLY A 144 SITE 3 AC2 17 THR A 145 ILE A 171 ASN A 206 TYR A 224 SITE 4 AC2 17 LEU A 227 ASN A 228 MG A 501 LEU B 248 SITE 5 AC2 17 LYS B 254 SITE 1 AC3 13 GLN B 11 CYS B 12 GLN B 15 SER B 140 SITE 2 AC3 13 GLY B 142 GLY B 143 GLY B 144 THR B 145 SITE 3 AC3 13 GLY B 146 ASP B 179 ASN B 206 TYR B 224 SITE 4 AC3 13 ASN B 228 SITE 1 AC4 16 GLU B 22 VAL B 23 ASP B 26 GLU B 27 SITE 2 AC4 16 ASP B 226 HIS B 229 LEU B 230 ALA B 233 SITE 3 AC4 16 SER B 236 PHE B 272 PRO B 274 LEU B 275 SITE 4 AC4 16 THR B 276 PRO B 360 ARG B 369 GLY B 370 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.001000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.001000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001000 0.00000