PDB Short entry for 5HVK HEADER TRANSFERASE 28-JAN-16 5HVK TITLE CRYSTAL STRUCTURE OF LIMK1 MUTANT D460N IN COMPLEX WITH FULL-LENGTH TITLE 2 COFILIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN KINASE 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 329-638; COMPND 5 SYNONYM: LIMK-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COFILIN-1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: 18 KDA PHOSPHOPROTEIN,P18,COFILIN,NON-MUSCLE ISOFORM; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: COFILIN-1; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: 18 KDA PHOSPHOPROTEIN,P18,COFILIN,NON-MUSCLE ISOFORM; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIMK1, LIMK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC HTB; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CFL1, CFL; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-28A; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: CFL1, CFL; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS KINASE SUBSTRATE ACTIN-REMODELING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HAMILL,T.J.BOGGON REVDAT 5 27-SEP-23 5HVK 1 LINK REVDAT 4 25-DEC-19 5HVK 1 REMARK REVDAT 3 13-SEP-17 5HVK 1 JRNL REMARK REVDAT 2 18-MAY-16 5HVK 1 JRNL REVDAT 1 04-MAY-16 5HVK 0 JRNL AUTH S.HAMILL,H.J.LOU,B.E.TURK,T.J.BOGGON JRNL TITL STRUCTURAL BASIS FOR NONCANONICAL SUBSTRATE RECOGNITION OF JRNL TITL 2 COFILIN/ADF PROTEINS BY LIM KINASES. JRNL REF MOL.CELL V. 62 397 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27153537 JRNL DOI 10.1016/J.MOLCEL.2016.04.001 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1819 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1167 - 6.3559 1.00 2582 129 0.2252 0.2286 REMARK 3 2 6.3559 - 5.0466 1.00 2438 135 0.2799 0.3375 REMARK 3 3 5.0466 - 4.4092 1.00 2419 139 0.2590 0.2858 REMARK 3 4 4.4092 - 4.0063 1.00 2392 134 0.2726 0.3452 REMARK 3 5 4.0063 - 3.7192 1.00 2388 126 0.3043 0.3507 REMARK 3 6 3.7192 - 3.5000 0.99 2380 120 0.3357 0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7606 REMARK 3 ANGLE : 0.763 10257 REMARK 3 CHIRALITY : 0.030 1116 REMARK 3 PLANARITY : 0.003 1297 REMARK 3 DIHEDRAL : 13.029 2917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000214972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15631 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.54000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4BEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.4 M TRI-SODIUM CITRATE, 0.1 M REMARK 280 SODIUM ACETATE, PH 5.5. 4 CRYSTALS USED., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.55800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.55800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 488 REMARK 465 LYS A 489 REMARK 465 THR A 490 REMARK 465 GLN A 491 REMARK 465 PRO A 492 REMARK 465 GLU A 493 REMARK 465 GLY A 494 REMARK 465 LEU A 495 REMARK 465 ARG A 496 REMARK 465 SER A 497 REMARK 465 LEU A 498 REMARK 465 LYS A 499 REMARK 465 LYS A 500 REMARK 465 GLY A 635 REMARK 465 GLU A 636 REMARK 465 SER A 637 REMARK 465 GLY A 638 REMARK 465 GLY C 324 REMARK 465 ALA C 325 REMARK 465 MET C 326 REMARK 465 GLY C 327 REMARK 465 ASP C 487 REMARK 465 GLU C 488 REMARK 465 LYS C 489 REMARK 465 THR C 490 REMARK 465 GLN C 491 REMARK 465 PRO C 492 REMARK 465 GLU C 493 REMARK 465 GLY C 494 REMARK 465 LEU C 495 REMARK 465 ARG C 496 REMARK 465 SER C 497 REMARK 465 LEU C 498 REMARK 465 LYS C 499 REMARK 465 LYS C 500 REMARK 465 ARG C 634 REMARK 465 GLY C 635 REMARK 465 GLU C 636 REMARK 465 SER C 637 REMARK 465 GLY C 638 REMARK 465 LEU D 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 140 OH REMARK 470 TYR D 140 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 326 -30.19 -130.03 REMARK 500 SER A 328 26.35 -77.91 REMARK 500 LEU A 345 37.50 -99.88 REMARK 500 PHE A 350 1.90 56.11 REMARK 500 ASP A 406 -24.85 64.21 REMARK 500 ARG A 408 -159.99 -145.57 REMARK 500 ARG A 459 18.52 59.42 REMARK 500 ASN A 460 36.93 -156.78 REMARK 500 ASP A 478 82.49 65.07 REMARK 500 TYR A 507 -162.61 53.75 REMARK 500 ASP A 527 -132.18 -120.28 REMARK 500 PRO A 554 109.29 -59.82 REMARK 500 SER A 578 -25.25 66.41 REMARK 500 SEP B 3 -22.07 91.33 REMARK 500 THR B 25 150.23 68.38 REMARK 500 ASP B 65 -62.17 72.95 REMARK 500 PRO C 330 158.15 -44.28 REMARK 500 CYS C 349 117.88 -170.47 REMARK 500 PHE C 350 -0.38 64.24 REMARK 500 ARG C 459 17.60 59.79 REMARK 500 ASN C 460 36.61 -157.25 REMARK 500 ASP C 527 -132.88 -118.33 REMARK 500 SER C 578 -25.73 65.95 REMARK 500 CYS D 39 -168.35 -116.74 REMARK 500 GLU D 93 24.12 -140.45 REMARK 500 LYS D 121 -70.01 -55.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 1001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 464 O REMARK 620 2 ANP A1001 O3' 120.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HVJ RELATED DB: PDB DBREF 5HVK A 329 638 UNP P53667 LIMK1_HUMAN 329 638 DBREF 5HVK B 2 166 UNP P23528 COF1_HUMAN 2 166 DBREF 5HVK C 329 638 UNP P53667 LIMK1_HUMAN 329 638 DBREF 5HVK D 2 166 UNP P23528 COF1_HUMAN 2 166 SEQADV 5HVK GLY A 324 UNP P53667 EXPRESSION TAG SEQADV 5HVK ALA A 325 UNP P53667 EXPRESSION TAG SEQADV 5HVK MET A 326 UNP P53667 EXPRESSION TAG SEQADV 5HVK GLY A 327 UNP P53667 EXPRESSION TAG SEQADV 5HVK SER A 328 UNP P53667 EXPRESSION TAG SEQADV 5HVK ASN A 460 UNP P53667 ASP 460 ENGINEERED MUTATION SEQADV 5HVK THR B 69 UNP P23528 ALA 69 ENGINEERED MUTATION SEQADV 5HVK GLY C 324 UNP P53667 EXPRESSION TAG SEQADV 5HVK ALA C 325 UNP P53667 EXPRESSION TAG SEQADV 5HVK MET C 326 UNP P53667 EXPRESSION TAG SEQADV 5HVK GLY C 327 UNP P53667 EXPRESSION TAG SEQADV 5HVK SER C 328 UNP P53667 EXPRESSION TAG SEQADV 5HVK ASN C 460 UNP P53667 ASP 460 ENGINEERED MUTATION SEQADV 5HVK THR D 69 UNP P23528 ALA 69 ENGINEERED MUTATION SEQRES 1 A 315 GLY ALA MET GLY SER ARG PRO HIS ARG ILE PHE ARG PRO SEQRES 2 A 315 SER ASP LEU ILE HIS GLY GLU VAL LEU GLY LYS GLY CYS SEQRES 3 A 315 PHE GLY GLN ALA ILE LYS VAL THR HIS ARG GLU THR GLY SEQRES 4 A 315 GLU VAL MET VAL MET LYS GLU LEU ILE ARG PHE ASP GLU SEQRES 5 A 315 GLU THR GLN ARG THR PHE LEU LYS GLU VAL LYS VAL MET SEQRES 6 A 315 ARG CYS LEU GLU HIS PRO ASN VAL LEU LYS PHE ILE GLY SEQRES 7 A 315 VAL LEU TYR LYS ASP LYS ARG LEU ASN PHE ILE THR GLU SEQRES 8 A 315 TYR ILE LYS GLY GLY THR LEU ARG GLY ILE ILE LYS SER SEQRES 9 A 315 MET ASP SER GLN TYR PRO TRP SER GLN ARG VAL SER PHE SEQRES 10 A 315 ALA LYS ASP ILE ALA SER GLY MET ALA TYR LEU HIS SER SEQRES 11 A 315 MET ASN ILE ILE HIS ARG ASN LEU ASN SER HIS ASN CYS SEQRES 12 A 315 LEU VAL ARG GLU ASN LYS ASN VAL VAL VAL ALA ASP PHE SEQRES 13 A 315 GLY LEU ALA ARG LEU MET VAL ASP GLU LYS THR GLN PRO SEQRES 14 A 315 GLU GLY LEU ARG SER LEU LYS LYS PRO ASP ARG LYS LYS SEQRES 15 A 315 ARG TYR TPO VAL VAL GLY ASN PRO TYR TRP MET ALA PRO SEQRES 16 A 315 GLU MET ILE ASN GLY ARG SER TYR ASP GLU LYS VAL ASP SEQRES 17 A 315 VAL PHE SER PHE GLY ILE VAL LEU CYS GLU ILE ILE GLY SEQRES 18 A 315 ARG VAL ASN ALA ASP PRO ASP TYR LEU PRO ARG THR MET SEQRES 19 A 315 ASP PHE GLY LEU ASN VAL ARG GLY PHE LEU ASP ARG TYR SEQRES 20 A 315 CYS PRO PRO ASN CYS PRO PRO SER PHE PHE PRO ILE THR SEQRES 21 A 315 VAL ARG CYS CYS ASP LEU ASP PRO GLU LYS ARG PRO SER SEQRES 22 A 315 PHE VAL LYS LEU GLU HIS TRP LEU GLU THR LEU ARG MET SEQRES 23 A 315 HIS LEU ALA GLY HIS LEU PRO LEU GLY PRO GLN LEU GLU SEQRES 24 A 315 GLN LEU ASP ARG GLY PHE TRP GLU THR TYR ARG ARG GLY SEQRES 25 A 315 GLU SER GLY SEQRES 1 B 165 ALA SEP GLY VAL ALA VAL SER ASP GLY VAL ILE LYS VAL SEQRES 2 B 165 PHE ASN ASP MET LYS VAL ARG LYS SER SER THR PRO GLU SEQRES 3 B 165 GLU VAL LYS LYS ARG LYS LYS ALA VAL LEU PHE CYS LEU SEQRES 4 B 165 SER GLU ASP LYS LYS ASN ILE ILE LEU GLU GLU GLY LYS SEQRES 5 B 165 GLU ILE LEU VAL GLY ASP VAL GLY GLN THR VAL ASP ASP SEQRES 6 B 165 PRO TYR THR THR PHE VAL LYS MET LEU PRO ASP LYS ASP SEQRES 7 B 165 CYS ARG TYR ALA LEU TYR ASP ALA THR TYR GLU THR LYS SEQRES 8 B 165 GLU SER LYS LYS GLU ASP LEU VAL PHE ILE PHE TRP ALA SEQRES 9 B 165 PRO GLU SER ALA PRO LEU LYS SER LYS MET ILE TYR ALA SEQRES 10 B 165 SER SER LYS ASP ALA ILE LYS LYS LYS LEU THR GLY ILE SEQRES 11 B 165 LYS HIS GLU LEU GLN ALA ASN CYS TYR GLU GLU VAL LYS SEQRES 12 B 165 ASP ARG CYS THR LEU ALA GLU LYS LEU GLY GLY SER ALA SEQRES 13 B 165 VAL ILE SER LEU GLU GLY LYS PRO LEU SEQRES 1 C 315 GLY ALA MET GLY SER ARG PRO HIS ARG ILE PHE ARG PRO SEQRES 2 C 315 SER ASP LEU ILE HIS GLY GLU VAL LEU GLY LYS GLY CYS SEQRES 3 C 315 PHE GLY GLN ALA ILE LYS VAL THR HIS ARG GLU THR GLY SEQRES 4 C 315 GLU VAL MET VAL MET LYS GLU LEU ILE ARG PHE ASP GLU SEQRES 5 C 315 GLU THR GLN ARG THR PHE LEU LYS GLU VAL LYS VAL MET SEQRES 6 C 315 ARG CYS LEU GLU HIS PRO ASN VAL LEU LYS PHE ILE GLY SEQRES 7 C 315 VAL LEU TYR LYS ASP LYS ARG LEU ASN PHE ILE THR GLU SEQRES 8 C 315 TYR ILE LYS GLY GLY THR LEU ARG GLY ILE ILE LYS SER SEQRES 9 C 315 MET ASP SER GLN TYR PRO TRP SER GLN ARG VAL SER PHE SEQRES 10 C 315 ALA LYS ASP ILE ALA SER GLY MET ALA TYR LEU HIS SER SEQRES 11 C 315 MET ASN ILE ILE HIS ARG ASN LEU ASN SER HIS ASN CYS SEQRES 12 C 315 LEU VAL ARG GLU ASN LYS ASN VAL VAL VAL ALA ASP PHE SEQRES 13 C 315 GLY LEU ALA ARG LEU MET VAL ASP GLU LYS THR GLN PRO SEQRES 14 C 315 GLU GLY LEU ARG SER LEU LYS LYS PRO ASP ARG LYS LYS SEQRES 15 C 315 ARG TYR TPO VAL VAL GLY ASN PRO TYR TRP MET ALA PRO SEQRES 16 C 315 GLU MET ILE ASN GLY ARG SER TYR ASP GLU LYS VAL ASP SEQRES 17 C 315 VAL PHE SER PHE GLY ILE VAL LEU CYS GLU ILE ILE GLY SEQRES 18 C 315 ARG VAL ASN ALA ASP PRO ASP TYR LEU PRO ARG THR MET SEQRES 19 C 315 ASP PHE GLY LEU ASN VAL ARG GLY PHE LEU ASP ARG TYR SEQRES 20 C 315 CYS PRO PRO ASN CYS PRO PRO SER PHE PHE PRO ILE THR SEQRES 21 C 315 VAL ARG CYS CYS ASP LEU ASP PRO GLU LYS ARG PRO SER SEQRES 22 C 315 PHE VAL LYS LEU GLU HIS TRP LEU GLU THR LEU ARG MET SEQRES 23 C 315 HIS LEU ALA GLY HIS LEU PRO LEU GLY PRO GLN LEU GLU SEQRES 24 C 315 GLN LEU ASP ARG GLY PHE TRP GLU THR TYR ARG ARG GLY SEQRES 25 C 315 GLU SER GLY SEQRES 1 D 165 ALA SER GLY VAL ALA VAL SER ASP GLY VAL ILE LYS VAL SEQRES 2 D 165 PHE ASN ASP MET LYS VAL ARG LYS SER SER THR PRO GLU SEQRES 3 D 165 GLU VAL LYS LYS ARG LYS LYS ALA VAL LEU PHE CYS LEU SEQRES 4 D 165 SER GLU ASP LYS LYS ASN ILE ILE LEU GLU GLU GLY LYS SEQRES 5 D 165 GLU ILE LEU VAL GLY ASP VAL GLY GLN THR VAL ASP ASP SEQRES 6 D 165 PRO TYR THR THR PHE VAL LYS MET LEU PRO ASP LYS ASP SEQRES 7 D 165 CYS ARG TYR ALA LEU TYR ASP ALA THR TYR GLU THR LYS SEQRES 8 D 165 GLU SER LYS LYS GLU ASP LEU VAL PHE ILE PHE TRP ALA SEQRES 9 D 165 PRO GLU SER ALA PRO LEU LYS SER LYS MET ILE TYR ALA SEQRES 10 D 165 SER SER LYS ASP ALA ILE LYS LYS LYS LEU THR GLY ILE SEQRES 11 D 165 LYS HIS GLU LEU GLN ALA ASN CYS TYR GLU GLU VAL LYS SEQRES 12 D 165 ASP ARG CYS THR LEU ALA GLU LYS LEU GLY GLY SER ALA SEQRES 13 D 165 VAL ILE SER LEU GLU GLY LYS PRO LEU MODRES 5HVK TPO A 508 THR MODIFIED RESIDUE MODRES 5HVK SEP B 3 SER MODIFIED RESIDUE MODRES 5HVK TPO C 508 THR MODIFIED RESIDUE HET TPO A 508 11 HET SEP B 3 10 HET TPO C 508 11 HET ANP A1001 27 HET MG A1002 1 HET ANP C 701 31 HET MG C 702 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 2 SEP C3 H8 N O6 P FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 6 MG 2(MG 2+) HELIX 1 AA1 THR A 377 ARG A 389 1 13 HELIX 2 AA2 THR A 420 SER A 427 1 8 HELIX 3 AA3 PRO A 433 MET A 454 1 22 HELIX 4 AA4 ALA A 517 ASN A 522 1 6 HELIX 5 AA5 GLU A 528 ARG A 545 1 18 HELIX 6 AA6 ASN A 562 TYR A 570 1 9 HELIX 7 AA7 SER A 578 CYS A 587 1 10 HELIX 8 AA8 ASP A 590 ARG A 594 5 5 HELIX 9 AA9 SER A 596 GLY A 613 1 18 HELIX 10 AB1 GLY A 618 THR A 631 1 14 HELIX 11 AB2 SER B 8 LYS B 19 1 12 HELIX 12 AB3 SER B 24 ARG B 32 1 9 HELIX 13 AB4 ASP B 66 LEU B 75 1 10 HELIX 14 AB5 PRO B 110 LEU B 128 1 19 HELIX 15 AB6 CYS B 139 LYS B 144 1 6 HELIX 16 AB7 ARG B 146 GLY B 154 1 9 HELIX 17 AB8 ASP C 374 ARG C 389 1 16 HELIX 18 AB9 THR C 420 SER C 427 1 8 HELIX 19 AC1 PRO C 433 MET C 454 1 22 HELIX 20 AC2 ALA C 517 ASN C 522 1 6 HELIX 21 AC3 GLU C 528 ARG C 545 1 18 HELIX 22 AC4 ASN C 562 TYR C 570 1 9 HELIX 23 AC5 SER C 578 CYS C 587 1 10 HELIX 24 AC6 ASP C 590 ARG C 594 5 5 HELIX 25 AC7 SER C 596 GLY C 613 1 18 HELIX 26 AC8 GLY C 618 TYR C 632 1 15 HELIX 27 AC9 SER D 8 LYS D 19 1 12 HELIX 28 AD1 THR D 25 LYS D 31 1 7 HELIX 29 AD2 GLY D 58 VAL D 60 5 3 HELIX 30 AD3 ASP D 66 LEU D 75 1 10 HELIX 31 AD4 PRO D 110 LYS D 126 1 17 HELIX 32 AD5 CYS D 139 LYS D 144 1 6 HELIX 33 AD6 ARG D 146 GLY D 154 1 9 SHEET 1 AA1 6 ARG A 332 PHE A 334 0 SHEET 2 AA1 6 PHE A 399 LEU A 403 1 O VAL A 402 N PHE A 334 SHEET 3 AA1 6 ASN A 410 GLU A 414 -1 O ILE A 412 N GLY A 401 SHEET 4 AA1 6 VAL A 364 LEU A 370 -1 N VAL A 366 O THR A 413 SHEET 5 AA1 6 GLY A 351 HIS A 358 -1 N ILE A 354 O MET A 367 SHEET 6 AA1 6 LEU A 339 VAL A 344 -1 N GLU A 343 O LYS A 355 SHEET 1 AA2 2 ILE A 456 ILE A 457 0 SHEET 2 AA2 2 ARG A 483 LEU A 484 -1 O ARG A 483 N ILE A 457 SHEET 1 AA3 2 CYS A 466 VAL A 468 0 SHEET 2 AA3 2 VAL A 474 VAL A 476 -1 O VAL A 475 N LEU A 467 SHEET 1 AA4 6 ALA B 6 VAL B 7 0 SHEET 2 AA4 6 ASN B 46 LEU B 56 1 O ILE B 47 N ALA B 6 SHEET 3 AA4 6 LYS B 33 LEU B 40 -1 N ALA B 35 O ILE B 55 SHEET 4 AA4 6 ARG B 81 GLU B 90 -1 O TYR B 82 N PHE B 38 SHEET 5 AA4 6 LYS B 96 TRP B 104 -1 O ILE B 102 N ALA B 83 SHEET 6 AA4 6 GLU B 134 ALA B 137 1 O LEU B 135 N PHE B 103 SHEET 1 AA5 6 ALA B 6 VAL B 7 0 SHEET 2 AA5 6 ASN B 46 LEU B 56 1 O ILE B 47 N ALA B 6 SHEET 3 AA5 6 LYS B 33 LEU B 40 -1 N ALA B 35 O ILE B 55 SHEET 4 AA5 6 ARG B 81 GLU B 90 -1 O TYR B 82 N PHE B 38 SHEET 5 AA5 6 SER B 160 LEU B 161 -1 O SER B 160 N GLU B 90 SHEET 6 AA5 6 LYS B 164 PRO B 165 -1 O LYS B 164 N LEU B 161 SHEET 1 AA6 6 ARG C 332 PHE C 334 0 SHEET 2 AA6 6 PHE C 399 LEU C 403 1 O VAL C 402 N PHE C 334 SHEET 3 AA6 6 ASN C 410 GLU C 414 -1 O ILE C 412 N GLY C 401 SHEET 4 AA6 6 VAL C 364 LEU C 370 -1 N VAL C 366 O THR C 413 SHEET 5 AA6 6 GLY C 351 HIS C 358 -1 N GLN C 352 O GLU C 369 SHEET 6 AA6 6 LEU C 339 VAL C 344 -1 N GLU C 343 O LYS C 355 SHEET 1 AA7 2 ILE C 456 ILE C 457 0 SHEET 2 AA7 2 ARG C 483 LEU C 484 -1 O ARG C 483 N ILE C 457 SHEET 1 AA8 2 CYS C 466 VAL C 468 0 SHEET 2 AA8 2 VAL C 474 VAL C 476 -1 O VAL C 475 N LEU C 467 SHEET 1 AA9 6 ALA D 6 VAL D 7 0 SHEET 2 AA9 6 ASN D 46 LEU D 56 1 O ILE D 47 N ALA D 6 SHEET 3 AA9 6 LYS D 33 LEU D 40 -1 N ALA D 35 O ILE D 55 SHEET 4 AA9 6 ARG D 81 THR D 91 -1 O ASP D 86 N LYS D 34 SHEET 5 AA9 6 SER D 94 TRP D 104 -1 O ILE D 102 N ALA D 83 SHEET 6 AA9 6 GLU D 134 ALA D 137 1 O LEU D 135 N PHE D 103 SHEET 1 AB1 5 ALA D 6 VAL D 7 0 SHEET 2 AB1 5 ASN D 46 LEU D 56 1 O ILE D 47 N ALA D 6 SHEET 3 AB1 5 LYS D 33 LEU D 40 -1 N ALA D 35 O ILE D 55 SHEET 4 AB1 5 ARG D 81 THR D 91 -1 O ASP D 86 N LYS D 34 SHEET 5 AB1 5 SER D 160 LEU D 161 -1 O SER D 160 N GLU D 90 LINK C TYR A 507 N TPO A 508 1555 1555 1.33 LINK C TPO A 508 N VAL A 509 1555 1555 1.33 LINK C ALA B 2 N SEP B 3 1555 1555 1.34 LINK C SEP B 3 N GLY B 4 1555 1555 1.33 LINK C TYR C 507 N TPO C 508 1555 1555 1.33 LINK C TPO C 508 N VAL C 509 1555 1555 1.33 LINK O HIS A 464 MG MG A1002 1555 1555 2.41 LINK O3' ANP A1001 MG MG A1002 1555 1555 2.07 LINK OD1 ASN C 465 MG MG C 702 1555 1555 2.80 CISPEP 1 GLY A 324 ALA A 325 0 -0.29 CISPEP 2 ASP A 502 ARG A 503 0 -12.27 CISPEP 3 SER B 41 GLU B 42 0 -22.59 CISPEP 4 GLY C 346 LYS C 347 0 3.54 CISPEP 5 ALA C 477 ASP C 478 0 -20.79 CISPEP 6 ASP C 502 ARG C 503 0 0.71 CISPEP 7 VAL D 60 GLY D 61 0 -11.85 CISPEP 8 VAL D 64 ASP D 65 0 -10.13 CISPEP 9 GLY D 154 GLY D 155 0 1.46 SITE 1 AC1 15 LEU A 345 CYS A 349 GLY A 351 VAL A 366 SITE 2 AC1 15 LYS A 368 LEU A 397 THR A 413 GLU A 414 SITE 3 AC1 15 ILE A 416 THR A 420 ASN A 465 LEU A 467 SITE 4 AC1 15 ASP A 478 MG A1002 SEP B 3 SITE 1 AC2 3 HIS A 464 ASN A 465 ANP A1001 SITE 1 AC3 14 LEU C 345 GLY C 351 VAL C 366 LYS C 368 SITE 2 AC3 14 LEU C 397 THR C 413 GLU C 414 ILE C 416 SITE 3 AC3 14 THR C 420 LEU C 467 ASP C 478 MG C 702 SITE 4 AC3 14 ALA D 2 SER D 3 SITE 1 AC4 3 HIS C 464 ASN C 465 ANP C 701 CRYST1 81.116 102.283 141.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012328 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007047 0.00000