PDB Short entry for 5HVM HEADER TRANSFERASE 28-JAN-16 5HVM TITLE STRUCTURE OF ASPERGILLUS FUMIGATUS TREHALOSE-6-PHOSPHATE SYNTHASE A IN TITLE 2 COMPLEX WITH UDP AND VALIDOXYLAMINE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TREHALOSE-6-PHOSPHATE SYNTHASE; COMPND 5 EC: 2.4.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOSARTORYA FUMIGATA (STRAIN ATCC MYA-4609 / SOURCE 3 AF293 / CBS 101355 / FGSC A1100); SOURCE 4 ORGANISM_TAXID: 330879; SOURCE 5 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 6 GENE: AFUA_6G12950; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TREHALOSE-6-PHOSPHATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MIAO,R.G.BRENNAN REVDAT 6 03-APR-24 5HVM 1 REMARK REVDAT 5 06-MAR-24 5HVM 1 REMARK REVDAT 4 11-DEC-19 5HVM 1 REMARK REVDAT 3 27-SEP-17 5HVM 1 JRNL REVDAT 2 20-SEP-17 5HVM 1 REMARK REVDAT 1 03-MAY-17 5HVM 0 JRNL AUTH Y.MIAO,J.L.TENOR,D.L.TOFFALETTI,S.A.MASKARINEC,J.LIU, JRNL AUTH 2 R.E.LEE,J.R.PERFECT,R.G.BRENNAN JRNL TITL STRUCTURAL AND IN VIVO STUDIES ON TREHALOSE-6-PHOSPHATE JRNL TITL 2 SYNTHASE FROM PATHOGENIC FUNGI PROVIDE INSIGHTS INTO ITS JRNL TITL 3 CATALYTIC MECHANISM, BIOLOGICAL NECESSITY, AND POTENTIAL FOR JRNL TITL 4 NOVEL ANTIFUNGAL DRUG DESIGN. JRNL REF MBIO V. 8 2017 JRNL REFN ESSN 2150-7511 JRNL PMID 28743811 JRNL DOI 10.1128/MBIO.00643-17 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3222 - 6.7769 0.99 2210 154 0.1770 0.2109 REMARK 3 2 6.7769 - 5.3822 1.00 2131 148 0.1989 0.2335 REMARK 3 3 5.3822 - 4.7028 1.00 2071 143 0.1513 0.1812 REMARK 3 4 4.7028 - 4.2732 1.00 2103 145 0.1419 0.1988 REMARK 3 5 4.2732 - 3.9672 1.00 2063 144 0.1592 0.2387 REMARK 3 6 3.9672 - 3.7334 1.00 2061 142 0.1639 0.2267 REMARK 3 7 3.7334 - 3.5465 1.00 2053 143 0.1751 0.2524 REMARK 3 8 3.5465 - 3.3922 1.00 2046 141 0.1843 0.2596 REMARK 3 9 3.3922 - 3.2617 1.00 2061 143 0.1985 0.2417 REMARK 3 10 3.2617 - 3.1492 1.00 2051 142 0.1961 0.2927 REMARK 3 11 3.1492 - 3.0507 1.00 2033 141 0.1847 0.2714 REMARK 3 12 3.0507 - 2.9635 1.00 2046 142 0.2107 0.2672 REMARK 3 13 2.9635 - 2.8855 1.00 2017 141 0.2321 0.3234 REMARK 3 14 2.8855 - 2.8151 0.93 1900 131 0.2543 0.3510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7453 REMARK 3 ANGLE : 1.207 10109 REMARK 3 CHIRALITY : 0.051 1111 REMARK 3 PLANARITY : 0.005 1284 REMARK 3 DIHEDRAL : 16.577 2691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REGION OF SER38 TO GLY40 IS REMARK 3 RELATIVELY FLEXIBLE AND SHOWS SCATTERED DENSITY. EVEN THOUGH REMARK 3 THESE TWO RESIDUES HAVE BEEN BUILT SLIGHTLY FARTHER AWAY FROM REMARK 3 EACH OTHER, THIS DOES NOT AFFECT THE OVERALL INTERPRETATION OF REMARK 3 THIS STRUCTURE REMARK 4 REMARK 4 5HVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CANDIDA ALBICANS TPS1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE, 0.1 M TRIS, 30% REMARK 280 PEG 1000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.95750 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.49600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.95750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.49600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 THR A 24 REMARK 465 ILE A 25 REMARK 465 LYS A 26 REMARK 465 ARG A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 SER A 39 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 GLY A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 LYS A 51 REMARK 465 SER A 52 REMARK 465 THR A 53 REMARK 465 THR A 54 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 ILE A 70 REMARK 465 HIS A 480 REMARK 465 SER A 481 REMARK 465 ALA A 482 REMARK 465 GLY A 483 REMARK 465 LYS A 484 REMARK 465 PHE A 485 REMARK 465 GLN A 486 REMARK 465 SER A 487 REMARK 465 ARG A 488 REMARK 465 LYS A 489 REMARK 465 ALA A 490 REMARK 465 LYS A 491 REMARK 465 LEU A 492 REMARK 465 PRO A 493 REMARK 465 GLU A 494 REMARK 465 SER A 495 REMARK 465 ALA A 496 REMARK 465 ASP A 497 REMARK 465 ALA A 498 REMARK 465 GLU A 499 REMARK 465 LYS A 500 REMARK 465 PRO A 501 REMARK 465 MET A 502 REMARK 465 ASN A 503 REMARK 465 GLY A 504 REMARK 465 SER A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 SER A 508 REMARK 465 GLU A 509 REMARK 465 GLU A 510 REMARK 465 SER A 511 REMARK 465 GLN A 512 REMARK 465 THR A 513 REMARK 465 THR A 514 REMARK 465 GLN A 515 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 GLU B 11 REMARK 465 PHE B 35 REMARK 465 SER B 36 REMARK 465 MET B 37 REMARK 465 SER B 38 REMARK 465 SER B 39 REMARK 465 LEU B 46 REMARK 465 SER B 47 REMARK 465 GLY B 48 REMARK 465 LEU B 49 REMARK 465 SER B 50 REMARK 465 LYS B 51 REMARK 465 SER B 52 REMARK 465 THR B 53 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 ILE B 70 REMARK 465 HIS B 480 REMARK 465 SER B 481 REMARK 465 ALA B 482 REMARK 465 GLY B 483 REMARK 465 LYS B 484 REMARK 465 PHE B 485 REMARK 465 GLN B 486 REMARK 465 SER B 487 REMARK 465 ARG B 488 REMARK 465 LYS B 489 REMARK 465 ALA B 490 REMARK 465 LYS B 491 REMARK 465 LEU B 492 REMARK 465 PRO B 493 REMARK 465 GLU B 494 REMARK 465 SER B 495 REMARK 465 ALA B 496 REMARK 465 ASP B 497 REMARK 465 ALA B 498 REMARK 465 GLU B 499 REMARK 465 LYS B 500 REMARK 465 PRO B 501 REMARK 465 MET B 502 REMARK 465 ASN B 503 REMARK 465 GLY B 504 REMARK 465 SER B 505 REMARK 465 GLY B 506 REMARK 465 GLU B 507 REMARK 465 SER B 508 REMARK 465 GLU B 509 REMARK 465 GLU B 510 REMARK 465 SER B 511 REMARK 465 GLN B 512 REMARK 465 THR B 513 REMARK 465 THR B 514 REMARK 465 GLN B 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 71 CG CD REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 151 HC VDM B 602 1.43 REMARK 500 OD2 ASP A 151 O3 VDM A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 22 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 80.40 -166.75 REMARK 500 LEU A 42 90.47 33.65 REMARK 500 SER A 44 161.49 64.94 REMARK 500 ILE A 104 -56.02 -126.53 REMARK 500 HIS A 112 65.74 -119.61 REMARK 500 GLU A 115 44.31 -81.55 REMARK 500 ASP A 151 171.93 80.16 REMARK 500 MET A 388 -61.83 -144.11 REMARK 500 ASN A 389 98.42 84.08 REMARK 500 ILE B 104 -57.47 -123.80 REMARK 500 GLU B 115 43.40 -82.05 REMARK 500 ASP B 151 170.90 82.32 REMARK 500 MET B 388 -60.80 -144.45 REMARK 500 ASN B 389 99.99 83.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VDM A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VDM B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HUS RELATED DB: PDB REMARK 900 RELATED ID: 5HUT RELATED DB: PDB REMARK 900 RELATED ID: 5HUU RELATED DB: PDB REMARK 900 RELATED ID: 5HUV RELATED DB: PDB REMARK 900 RELATED ID: 5HUO RELATED DB: PDB REMARK 900 RELATED ID: 5HVL RELATED DB: PDB DBREF 5HVM A 1 515 UNP Q4WLM9 Q4WLM9_ASPFU 1 515 DBREF 5HVM B 1 515 UNP Q4WLM9 Q4WLM9_ASPFU 1 515 SEQRES 1 A 515 MET PRO SER LEU GLU ASN SER THR GLN ASN GLU ALA ARG SEQRES 2 A 515 LEU LEU LEU VAL SER ASN ARG LEU PRO ILE THR ILE LYS SEQRES 3 A 515 ARG SER GLU ASP GLY LYS TYR ASP PHE SER MET SER SER SEQRES 4 A 515 GLY GLY LEU VAL SER GLY LEU SER GLY LEU SER LYS SER SEQRES 5 A 515 THR THR PHE GLN TRP TYR GLY TRP PRO GLY LEU GLU VAL SEQRES 6 A 515 PRO GLU GLU GLU ILE PRO VAL VAL LYS GLN ARG LEU LYS SEQRES 7 A 515 ASP GLU TYR GLY ALA ILE PRO VAL PHE ILE ASP ASP GLU SEQRES 8 A 515 LEU ALA ASP ARG HIS TYR ASN GLY PHE SER ASN SER ILE SEQRES 9 A 515 LEU TRP PRO LEU PHE HIS TYR HIS PRO GLY GLU ILE THR SEQRES 10 A 515 PHE ASP GLU SER ALA TRP GLU ALA TYR LYS GLU ALA ASN SEQRES 11 A 515 ARG LEU PHE ALA LYS ALA VAL ALA LYS GLU VAL GLN ASP SEQRES 12 A 515 GLY ASP LEU ILE TRP VAL HIS ASP TYR HIS LEU MET LEU SEQRES 13 A 515 LEU PRO GLU MET LEU ARG GLU GLU ILE GLY ASP SER LYS SEQRES 14 A 515 GLU ASN VAL LYS ILE GLY PHE PHE LEU HIS THR PRO PHE SEQRES 15 A 515 PRO SER SER GLU ILE TYR ARG ILE LEU PRO VAL ARG ASN SEQRES 16 A 515 GLU LEU LEU LEU GLY VAL LEU HIS CYS ASP LEU ILE GLY SEQRES 17 A 515 PHE HIS THR TYR ASP TYR THR ARG HIS PHE LEU SER ALA SEQRES 18 A 515 CYS SER ARG LEU LEU GLY LEU ALA THR THR PRO ASN GLY SEQRES 19 A 515 ILE GLU PHE GLN GLY LYS VAL ILE ALA CYS GLY ALA PHE SEQRES 20 A 515 PRO ILE GLY ILE ASP PRO GLU LYS PHE GLN GLU GLY LEU SEQRES 21 A 515 LYS LYS GLU LYS VAL GLN LYS ARG ILE ALA GLN LEU GLU SEQRES 22 A 515 GLN LYS PHE GLN GLY VAL LYS LEU MET VAL GLY VAL ASP SEQRES 23 A 515 ARG LEU ASP TYR ILE LYS GLY VAL PRO GLN LYS LEU HIS SEQRES 24 A 515 ALA LEU GLU VAL PHE LEU SER ASP HIS PRO GLU TRP VAL SEQRES 25 A 515 GLY LYS VAL VAL LEU VAL GLN VAL ALA VAL PRO SER ARG SEQRES 26 A 515 GLN ASP VAL GLU GLU TYR GLN ASN LEU ARG ALA VAL VAL SEQRES 27 A 515 ASN GLU LEU VAL GLY ARG ILE ASN GLY LYS PHE GLY THR SEQRES 28 A 515 VAL GLU PHE MET PRO ILE HIS PHE LEU HIS LYS SER VAL SEQRES 29 A 515 ASN PHE ASP GLU LEU ILE ALA LEU TYR ALA VAL SER ASP SEQRES 30 A 515 ALA CYS ILE VAL SER SER THR ARG ASP GLY MET ASN LEU SEQRES 31 A 515 VAL ALA TYR GLU TYR ILE ALA SER GLN GLN LYS ARG HIS SEQRES 32 A 515 GLY VAL LEU VAL LEU SER GLU PHE ALA GLY ALA ALA GLN SEQRES 33 A 515 SER LEU ASN GLY SER ILE ILE ILE ASN PRO TRP ASN THR SEQRES 34 A 515 GLU GLU LEU ALA GLY ALA TYR GLN GLU ALA VAL THR MET SEQRES 35 A 515 SER ASP GLU GLN ARG ALA LEU ASN PHE SER LYS LEU ASP SEQRES 36 A 515 LYS TYR VAL ASN LYS TYR THR SER ALA PHE TRP GLY GLN SEQRES 37 A 515 SER PHE VAL THR GLU LEU ASN ARG ILE SER ALA HIS SER SEQRES 38 A 515 ALA GLY LYS PHE GLN SER ARG LYS ALA LYS LEU PRO GLU SEQRES 39 A 515 SER ALA ASP ALA GLU LYS PRO MET ASN GLY SER GLY GLU SEQRES 40 A 515 SER GLU GLU SER GLN THR THR GLN SEQRES 1 B 515 MET PRO SER LEU GLU ASN SER THR GLN ASN GLU ALA ARG SEQRES 2 B 515 LEU LEU LEU VAL SER ASN ARG LEU PRO ILE THR ILE LYS SEQRES 3 B 515 ARG SER GLU ASP GLY LYS TYR ASP PHE SER MET SER SER SEQRES 4 B 515 GLY GLY LEU VAL SER GLY LEU SER GLY LEU SER LYS SER SEQRES 5 B 515 THR THR PHE GLN TRP TYR GLY TRP PRO GLY LEU GLU VAL SEQRES 6 B 515 PRO GLU GLU GLU ILE PRO VAL VAL LYS GLN ARG LEU LYS SEQRES 7 B 515 ASP GLU TYR GLY ALA ILE PRO VAL PHE ILE ASP ASP GLU SEQRES 8 B 515 LEU ALA ASP ARG HIS TYR ASN GLY PHE SER ASN SER ILE SEQRES 9 B 515 LEU TRP PRO LEU PHE HIS TYR HIS PRO GLY GLU ILE THR SEQRES 10 B 515 PHE ASP GLU SER ALA TRP GLU ALA TYR LYS GLU ALA ASN SEQRES 11 B 515 ARG LEU PHE ALA LYS ALA VAL ALA LYS GLU VAL GLN ASP SEQRES 12 B 515 GLY ASP LEU ILE TRP VAL HIS ASP TYR HIS LEU MET LEU SEQRES 13 B 515 LEU PRO GLU MET LEU ARG GLU GLU ILE GLY ASP SER LYS SEQRES 14 B 515 GLU ASN VAL LYS ILE GLY PHE PHE LEU HIS THR PRO PHE SEQRES 15 B 515 PRO SER SER GLU ILE TYR ARG ILE LEU PRO VAL ARG ASN SEQRES 16 B 515 GLU LEU LEU LEU GLY VAL LEU HIS CYS ASP LEU ILE GLY SEQRES 17 B 515 PHE HIS THR TYR ASP TYR THR ARG HIS PHE LEU SER ALA SEQRES 18 B 515 CYS SER ARG LEU LEU GLY LEU ALA THR THR PRO ASN GLY SEQRES 19 B 515 ILE GLU PHE GLN GLY LYS VAL ILE ALA CYS GLY ALA PHE SEQRES 20 B 515 PRO ILE GLY ILE ASP PRO GLU LYS PHE GLN GLU GLY LEU SEQRES 21 B 515 LYS LYS GLU LYS VAL GLN LYS ARG ILE ALA GLN LEU GLU SEQRES 22 B 515 GLN LYS PHE GLN GLY VAL LYS LEU MET VAL GLY VAL ASP SEQRES 23 B 515 ARG LEU ASP TYR ILE LYS GLY VAL PRO GLN LYS LEU HIS SEQRES 24 B 515 ALA LEU GLU VAL PHE LEU SER ASP HIS PRO GLU TRP VAL SEQRES 25 B 515 GLY LYS VAL VAL LEU VAL GLN VAL ALA VAL PRO SER ARG SEQRES 26 B 515 GLN ASP VAL GLU GLU TYR GLN ASN LEU ARG ALA VAL VAL SEQRES 27 B 515 ASN GLU LEU VAL GLY ARG ILE ASN GLY LYS PHE GLY THR SEQRES 28 B 515 VAL GLU PHE MET PRO ILE HIS PHE LEU HIS LYS SER VAL SEQRES 29 B 515 ASN PHE ASP GLU LEU ILE ALA LEU TYR ALA VAL SER ASP SEQRES 30 B 515 ALA CYS ILE VAL SER SER THR ARG ASP GLY MET ASN LEU SEQRES 31 B 515 VAL ALA TYR GLU TYR ILE ALA SER GLN GLN LYS ARG HIS SEQRES 32 B 515 GLY VAL LEU VAL LEU SER GLU PHE ALA GLY ALA ALA GLN SEQRES 33 B 515 SER LEU ASN GLY SER ILE ILE ILE ASN PRO TRP ASN THR SEQRES 34 B 515 GLU GLU LEU ALA GLY ALA TYR GLN GLU ALA VAL THR MET SEQRES 35 B 515 SER ASP GLU GLN ARG ALA LEU ASN PHE SER LYS LEU ASP SEQRES 36 B 515 LYS TYR VAL ASN LYS TYR THR SER ALA PHE TRP GLY GLN SEQRES 37 B 515 SER PHE VAL THR GLU LEU ASN ARG ILE SER ALA HIS SER SEQRES 38 B 515 ALA GLY LYS PHE GLN SER ARG LYS ALA LYS LEU PRO GLU SEQRES 39 B 515 SER ALA ASP ALA GLU LYS PRO MET ASN GLY SER GLY GLU SEQRES 40 B 515 SER GLU GLU SER GLN THR THR GLN HET UDP A 601 36 HET VDM A 602 48 HET UDP B 601 36 HET VDM B 602 48 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM VDM (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2, HETNAM 2 VDM 3,4-TRIHYDROXY-5-(HYDROXYMETHYL) HETNAM 3 VDM CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL HETSYN VDM VALIDOXYLAMINE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 VDM 2(C14 H25 N O8) FORMUL 7 HOH *10(H2 O) HELIX 1 AA1 VAL A 72 TYR A 81 1 10 HELIX 2 AA2 ASP A 89 ASN A 98 1 10 HELIX 3 AA3 ILE A 104 HIS A 110 1 7 HELIX 4 AA4 TYR A 111 ILE A 116 5 6 HELIX 5 AA5 ASP A 119 VAL A 141 1 23 HELIX 6 AA6 TYR A 152 MET A 155 5 4 HELIX 7 AA7 LEU A 156 GLY A 166 1 11 HELIX 8 AA8 SER A 184 ARG A 189 1 6 HELIX 9 AA9 VAL A 193 LEU A 202 1 10 HELIX 10 AB1 THR A 211 LEU A 226 1 16 HELIX 11 AB2 ASP A 252 LEU A 260 1 9 HELIX 12 AB3 LYS A 262 PHE A 276 1 15 HELIX 13 AB4 ASP A 289 LYS A 292 5 4 HELIX 14 AB5 GLY A 293 HIS A 308 1 16 HELIX 15 AB6 PRO A 309 VAL A 312 5 4 HELIX 16 AB7 VAL A 328 GLY A 350 1 23 HELIX 17 AB8 ASN A 365 SER A 376 1 12 HELIX 18 AB9 LEU A 390 SER A 398 1 9 HELIX 19 AC1 GLY A 413 LEU A 418 1 6 HELIX 20 AC2 ASN A 428 MET A 442 1 15 HELIX 21 AC3 SER A 443 TYR A 461 1 19 HELIX 22 AC4 THR A 462 ALA A 479 1 18 HELIX 23 AC5 VAL B 72 TYR B 81 1 10 HELIX 24 AC6 ASP B 89 ASN B 98 1 10 HELIX 25 AC7 ILE B 104 PHE B 109 1 6 HELIX 26 AC8 HIS B 110 TYR B 111 5 2 HELIX 27 AC9 HIS B 112 ILE B 116 5 5 HELIX 28 AD1 ASP B 119 GLU B 140 1 22 HELIX 29 AD2 TYR B 152 MET B 155 5 4 HELIX 30 AD3 LEU B 156 GLY B 166 1 11 HELIX 31 AD4 SER B 184 ARG B 189 1 6 HELIX 32 AD5 VAL B 193 LEU B 202 1 10 HELIX 33 AD6 THR B 211 LEU B 226 1 16 HELIX 34 AD7 ASP B 252 LYS B 262 1 11 HELIX 35 AD8 LYS B 262 PHE B 276 1 15 HELIX 36 AD9 ASP B 289 LYS B 292 5 4 HELIX 37 AE1 GLY B 293 HIS B 308 1 16 HELIX 38 AE2 PRO B 309 VAL B 312 5 4 HELIX 39 AE3 VAL B 328 GLY B 350 1 23 HELIX 40 AE4 ASN B 365 SER B 376 1 12 HELIX 41 AE5 LEU B 390 SER B 398 1 9 HELIX 42 AE6 GLY B 413 LEU B 418 1 6 HELIX 43 AE7 ASN B 428 MET B 442 1 15 HELIX 44 AE8 SER B 443 TYR B 461 1 19 HELIX 45 AE9 THR B 462 ALA B 479 1 18 SHEET 1 AA1 9 ALA A 83 PRO A 85 0 SHEET 2 AA1 9 GLN A 56 TRP A 60 1 N TRP A 57 O ILE A 84 SHEET 3 AA1 9 LEU A 14 ARG A 20 1 N LEU A 16 O TYR A 58 SHEET 4 AA1 9 LEU A 146 HIS A 150 1 O LEU A 146 N LEU A 15 SHEET 5 AA1 9 LYS A 173 PHE A 177 1 O LYS A 173 N ILE A 147 SHEET 6 AA1 9 LEU A 206 PHE A 209 1 O LEU A 206 N PHE A 176 SHEET 7 AA1 9 LYS A 240 ALA A 246 1 O GLY A 245 N ILE A 207 SHEET 8 AA1 9 GLY A 234 PHE A 237 -1 N ILE A 235 O ILE A 242 SHEET 9 AA1 9 THR A 230 THR A 231 -1 N THR A 231 O GLY A 234 SHEET 1 AA2 6 ILE A 357 LEU A 360 0 SHEET 2 AA2 6 VAL A 315 VAL A 322 1 N GLN A 319 O LEU A 360 SHEET 3 AA2 6 LYS A 280 ARG A 287 1 N MET A 282 O VAL A 318 SHEET 4 AA2 6 ALA A 378 VAL A 381 1 O ALA A 378 N VAL A 283 SHEET 5 AA2 6 VAL A 405 SER A 409 1 O VAL A 407 N VAL A 381 SHEET 6 AA2 6 ILE A 422 ILE A 424 1 O ILE A 422 N LEU A 406 SHEET 1 AA3 9 ALA B 83 PRO B 85 0 SHEET 2 AA3 9 PHE B 55 TRP B 60 1 N TRP B 57 O ILE B 84 SHEET 3 AA3 9 LEU B 14 ARG B 20 1 N LEU B 16 O TYR B 58 SHEET 4 AA3 9 LEU B 146 HIS B 150 1 O LEU B 146 N LEU B 15 SHEET 5 AA3 9 LYS B 173 PHE B 177 1 O GLY B 175 N ILE B 147 SHEET 6 AA3 9 LEU B 206 PHE B 209 1 O GLY B 208 N PHE B 176 SHEET 7 AA3 9 LYS B 240 ALA B 246 1 O GLY B 245 N ILE B 207 SHEET 8 AA3 9 GLY B 234 PHE B 237 -1 N ILE B 235 O ILE B 242 SHEET 9 AA3 9 THR B 230 THR B 231 -1 N THR B 231 O GLY B 234 SHEET 1 AA4 2 LYS B 26 SER B 28 0 SHEET 2 AA4 2 GLY B 31 TYR B 33 -1 O TYR B 33 N LYS B 26 SHEET 1 AA5 6 ILE B 357 LEU B 360 0 SHEET 2 AA5 6 VAL B 315 VAL B 322 1 N ALA B 321 O LEU B 360 SHEET 3 AA5 6 LYS B 280 ARG B 287 1 N MET B 282 O VAL B 318 SHEET 4 AA5 6 ALA B 378 VAL B 381 1 O ALA B 378 N VAL B 283 SHEET 5 AA5 6 VAL B 405 SER B 409 1 O VAL B 407 N CYS B 379 SHEET 6 AA5 6 ILE B 422 ILE B 424 1 O ILE B 422 N LEU B 408 SITE 1 AC1 11 ARG A 287 LYS A 292 VAL A 322 SER A 363 SITE 2 AC1 11 VAL A 364 LEU A 369 LEU A 390 VAL A 391 SITE 3 AC1 11 GLU A 394 VDM A 602 HOH A 701 SITE 1 AC2 12 TRP A 106 ASP A 151 HIS A 153 HIS A 179 SITE 2 AC2 12 ILE A 249 ARG A 325 ASP A 386 GLY A 387 SITE 3 AC2 12 MET A 388 ASN A 389 LEU A 390 UDP A 601 SITE 1 AC3 12 VAL B 285 ARG B 287 LYS B 292 VAL B 322 SITE 2 AC3 12 SER B 363 VAL B 364 LEU B 369 ASN B 389 SITE 3 AC3 12 LEU B 390 VAL B 391 GLU B 394 VDM B 602 SITE 1 AC4 10 TRP B 106 ASP B 151 HIS B 179 ARG B 287 SITE 2 AC4 10 ARG B 325 ASP B 386 GLY B 387 MET B 388 SITE 3 AC4 10 ASN B 389 UDP B 601 CRYST1 83.915 101.153 146.992 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006803 0.00000