PDB Short entry for 5HVQ HEADER LIGASE 28-JAN-16 5HVQ TITLE ALTERNATIVE MODEL OF THE MAGE-G1 NSE-1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MELANOMA-ASSOCIATED ANTIGEN G1; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: HEPATOCELLULAR CARCINOMA-ASSOCIATED PROTEIN 4,MAGE-G1 COMPND 5 ANTIGEN,NECDIN-LIKE PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 COMPND 9 HOMOLOG; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: NON-SMC ELEMENT 1 HOMOLOG; COMPND 12 EC: 6.3.2.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NDNL2, HCA4, MAGEG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NSMCE1, HSPC333, HSPC337; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX MELANOMA ANTIGEN RING-CONTAINING E3 LIGASES, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,C.D.O.COOPER,A.K.ROOS,H.AITKENHEAD,U.C.T.OPPERMANN, AUTHOR 2 H.J.CHO,R.OSMAN,O.GILEADI REVDAT 1 26-OCT-16 5HVQ 0 JRNL AUTH J.A.NEWMAN,C.D.COOPER,A.K.ROOS,H.AITKENHEAD,U.C.OPPERMANN, JRNL AUTH 2 H.J.CHO,R.OSMAN,O.GILEADI JRNL TITL STRUCTURES OF TWO MELANOMA-ASSOCIATED ANTIGENS SUGGEST JRNL TITL 2 ALLOSTERIC REGULATION OF EFFECTOR BINDING. JRNL REF PLOS ONE V. 11 48762 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 26910052 JRNL DOI 10.1371/JOURNAL.PONE.0148762 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 15209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3622 - 4.9927 0.99 3113 146 0.2134 0.2356 REMARK 3 2 4.9927 - 3.9651 0.99 2947 145 0.2091 0.2255 REMARK 3 3 3.9651 - 3.4646 0.99 2922 166 0.2519 0.2987 REMARK 3 4 3.4646 - 3.1481 1.00 2892 158 0.3041 0.3404 REMARK 3 5 3.1481 - 2.9226 0.89 2579 141 0.3886 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3607 REMARK 3 ANGLE : 0.685 4863 REMARK 3 CHIRALITY : 0.026 539 REMARK 3 PLANARITY : 0.003 621 REMARK 3 DIHEDRAL : 14.008 1380 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 78 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1393 17.6373 15.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.6267 REMARK 3 T33: 0.6128 T12: -0.0963 REMARK 3 T13: 0.0473 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 5.3692 L22: 5.6521 REMARK 3 L33: 8.4846 L12: -1.4272 REMARK 3 L13: -0.0423 L23: 2.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: 0.4591 S13: -0.7687 REMARK 3 S21: -0.2620 S22: 0.3838 S23: -0.6417 REMARK 3 S31: -0.1950 S32: 1.0934 S33: -0.4176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 162 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9778 -0.9164 7.6873 REMARK 3 T TENSOR REMARK 3 T11: 1.5425 T22: 1.7151 REMARK 3 T33: 1.1216 T12: -0.0269 REMARK 3 T13: 0.0763 T23: 0.2193 REMARK 3 L TENSOR REMARK 3 L11: 3.3175 L22: 3.5318 REMARK 3 L33: 8.4961 L12: 1.6770 REMARK 3 L13: -2.0502 L23: 3.2481 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: -0.0463 S13: 1.1455 REMARK 3 S21: 1.5527 S22: 1.2745 S23: 1.2828 REMARK 3 S31: 0.3519 S32: -0.1200 S33: -1.2989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 174 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0291 2.3214 -2.6440 REMARK 3 T TENSOR REMARK 3 T11: 1.1089 T22: 1.2465 REMARK 3 T33: 0.5133 T12: -0.6498 REMARK 3 T13: -0.1214 T23: 0.2018 REMARK 3 L TENSOR REMARK 3 L11: 6.4020 L22: 4.4852 REMARK 3 L33: 3.1506 L12: 3.5430 REMARK 3 L13: 0.1606 L23: 2.5471 REMARK 3 S TENSOR REMARK 3 S11: -1.7378 S12: 1.9623 S13: 1.7826 REMARK 3 S21: -1.3519 S22: 1.2847 S23: 1.0038 REMARK 3 S31: -1.0240 S32: -0.9188 S33: 0.3276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 189 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1390 2.8753 -12.8322 REMARK 3 T TENSOR REMARK 3 T11: 1.3533 T22: 2.0928 REMARK 3 T33: 0.7713 T12: -0.3991 REMARK 3 T13: 0.1974 T23: 0.2311 REMARK 3 L TENSOR REMARK 3 L11: 2.0081 L22: 3.8715 REMARK 3 L33: 0.8541 L12: 5.5543 REMARK 3 L13: -2.0628 L23: -0.5269 REMARK 3 S TENSOR REMARK 3 S11: -0.7541 S12: 3.0822 S13: 1.8634 REMARK 3 S21: -2.1144 S22: 0.9512 S23: 0.7245 REMARK 3 S31: -0.5204 S32: -0.3486 S33: -0.5056 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 220 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9528 -8.4953 -7.5068 REMARK 3 T TENSOR REMARK 3 T11: 1.7844 T22: 1.8122 REMARK 3 T33: 1.4726 T12: -0.8726 REMARK 3 T13: -0.0958 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 7.2097 L22: 2.7568 REMARK 3 L33: 1.3967 L12: -1.6741 REMARK 3 L13: 3.0840 L23: -0.2886 REMARK 3 S TENSOR REMARK 3 S11: 0.9997 S12: 0.1967 S13: -3.6030 REMARK 3 S21: -2.4031 S22: 1.4528 S23: 0.3256 REMARK 3 S31: -0.6943 S32: 0.0873 S33: -2.2500 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 230 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7322 7.0571 1.5472 REMARK 3 T TENSOR REMARK 3 T11: 0.7950 T22: 0.8675 REMARK 3 T33: 1.0064 T12: -0.2092 REMARK 3 T13: -0.2121 T23: 0.1269 REMARK 3 L TENSOR REMARK 3 L11: 9.1477 L22: 8.2147 REMARK 3 L33: 3.6885 L12: -1.3405 REMARK 3 L13: -0.3341 L23: -0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.9501 S12: 0.3330 S13: 1.4145 REMARK 3 S21: -0.2892 S22: 0.8002 S23: 1.1774 REMARK 3 S31: -0.6046 S32: 0.3408 S33: 0.2051 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 9 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7800 15.8726 23.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.6920 T22: 0.6562 REMARK 3 T33: 0.9187 T12: -0.1582 REMARK 3 T13: 0.1224 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 8.2219 L22: 6.7710 REMARK 3 L33: 6.0920 L12: 1.2001 REMARK 3 L13: 2.1605 L23: -0.7125 REMARK 3 S TENSOR REMARK 3 S11: 0.2794 S12: -0.4487 S13: -1.7235 REMARK 3 S21: 0.6929 S22: -0.1520 S23: 0.6134 REMARK 3 S31: 0.7748 S32: -0.4128 S33: -0.2271 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 68 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5682 29.1471 14.6434 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.5027 REMARK 3 T33: 0.5448 T12: -0.0908 REMARK 3 T13: 0.0862 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.6568 L22: 4.7703 REMARK 3 L33: 4.1765 L12: -2.4342 REMARK 3 L13: 0.9206 L23: 0.3297 REMARK 3 S TENSOR REMARK 3 S11: 0.7938 S12: 0.0493 S13: 0.4291 REMARK 3 S21: -0.3302 S22: -0.3573 S23: -0.6078 REMARK 3 S31: -0.2200 S32: 0.3031 S33: -0.4237 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 103 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0967 39.1009 6.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.4494 REMARK 3 T33: 0.4480 T12: -0.0182 REMARK 3 T13: -0.0355 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 9.5836 L22: 2.6887 REMARK 3 L33: 7.1552 L12: -3.7832 REMARK 3 L13: -5.9945 L23: 3.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.4625 S12: 0.7938 S13: 0.3528 REMARK 3 S21: -0.5071 S22: -0.3991 S23: -0.1082 REMARK 3 S31: -0.9494 S32: -0.6058 S33: -0.0512 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.923 REMARK 200 RESOLUTION RANGE LOW (A) : 32.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AS FOR ENTRY 3NW0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.62850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.62850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 163 REMARK 465 LEU D 205 REMARK 465 GLY D 206 REMARK 465 VAL D 207 REMARK 465 TYR D 208 REMARK 465 PRO D 209 REMARK 465 THR D 210 REMARK 465 LYS D 211 REMARK 465 LYS D 212 REMARK 465 HIS D 213 REMARK 465 LEU D 214 REMARK 465 ILE D 215 REMARK 465 PHE D 216 REMARK 465 GLY D 217 REMARK 465 ASP D 218 REMARK 465 HIS D 240 REMARK 465 THR D 241 REMARK 465 ASP D 242 REMARK 465 PRO D 243 REMARK 465 VAL D 244 REMARK 465 ASP C 45 REMARK 465 ARG C 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU D 193 CG CD1 CD2 REMARK 470 LYS D 220 CG CD CE NZ REMARK 470 ARG D 294 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN D 171 CD LYS D 269 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 105 C - N - CD ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL D 115 -43.91 -137.96 REMARK 500 LEU D 158 -169.26 -100.40 REMARK 500 ALA D 165 -75.48 -112.70 REMARK 500 ASN D 191 17.21 59.36 REMARK 500 LEU D 202 -71.17 -56.62 REMARK 500 GLN D 273 -179.73 179.70 REMARK 500 TRP D 278 76.65 -108.21 REMARK 500 ALA C 90 -175.40 -69.69 REMARK 500 ILE C 199 -60.44 -98.49 REMARK 500 CYS C 207 -153.51 -95.62 REMARK 500 GLU C 225 78.72 -152.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE D 104 PRO D 105 -32.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 191 SG REMARK 620 2 CYS C 194 SG 113.3 REMARK 620 3 HIS C 212 ND1 112.5 90.5 REMARK 620 4 CYS C 215 SG 107.6 115.0 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 204 SG REMARK 620 2 CYS C 207 SG 108.5 REMARK 620 3 CYS C 228 SG 107.3 108.0 REMARK 620 4 CYS C 231 SG 106.0 124.7 101.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NW0 RELATED DB: PDB REMARK 900 THIS ENTRY IS AN ALTERNATIVE MODELING OF THE MAGE-G1 NSE-1 COMPLEX REMARK 900 STRUCTURE DETERMINED BY THE AUTHORS OF WWPDB ENTRY 3NW0 DBREF 5HVQ D 78 294 UNP Q96MG7 MAGG1_HUMAN 78 294 DBREF 5HVQ C 9 246 UNP Q8WV22 NSE1_HUMAN 9 246 SEQADV 5HVQ LEU D 193 UNP Q96MG7 ILE 193 CONFLICT SEQADV 5HVQ LEU D 258 UNP Q96MG7 THR 258 CONFLICT SEQRES 1 D 217 GLY PRO ARG SER GLN LYS GLN LEU GLU LEU LYS VAL SER SEQRES 2 D 217 GLU LEU VAL GLN PHE LEU LEU ILE LYS ASP GLN LYS LYS SEQRES 3 D 217 ILE PRO ILE LYS ARG ALA ASP ILE LEU LYS HIS VAL ILE SEQRES 4 D 217 GLY ASP TYR LYS ASP ILE PHE PRO ASP LEU PHE LYS ARG SEQRES 5 D 217 ALA ALA GLU ARG LEU GLN TYR VAL PHE GLY TYR LYS LEU SEQRES 6 D 217 VAL GLU LEU GLU PRO LYS SER ASN THR TYR ILE LEU ILE SEQRES 7 D 217 ASN THR LEU GLU PRO VAL GLU GLU ASP ALA GLU MET ARG SEQRES 8 D 217 GLY ASP GLN GLY THR PRO THR THR GLY LEU LEU MET ILE SEQRES 9 D 217 VAL LEU GLY LEU ILE PHE MET LYS GLY ASN THR LEU LYS SEQRES 10 D 217 GLU THR GLU ALA TRP ASP PHE LEU ARG ARG LEU GLY VAL SEQRES 11 D 217 TYR PRO THR LYS LYS HIS LEU ILE PHE GLY ASP PRO LYS SEQRES 12 D 217 LYS LEU ILE THR GLU ASP PHE VAL ARG GLN ARG TYR LEU SEQRES 13 D 217 GLU TYR ARG ARG ILE PRO HIS THR ASP PRO VAL ASP TYR SEQRES 14 D 217 GLU PHE GLN TRP GLY PRO ARG THR ASN LEU GLU LEU SER SEQRES 15 D 217 LYS MET LYS VAL LEU LYS PHE VAL ALA LYS VAL HIS ASN SEQRES 16 D 217 GLN ASP PRO LYS ASP TRP PRO ALA GLN TYR CYS GLU ALA SEQRES 17 D 217 LEU ALA ASP GLU GLU ASN ARG ALA ARG SEQRES 1 C 238 GLY VAL MET THR ASP VAL HIS ARG ARG PHE LEU GLN LEU SEQRES 2 C 238 LEU MET THR HIS GLY VAL LEU GLU GLU TRP ASP VAL LYS SEQRES 3 C 238 ARG LEU GLN THR HIS CYS TYR LYS VAL HIS ASP ARG ASN SEQRES 4 C 238 ALA THR VAL ASP LYS LEU GLU ASP PHE ILE ASN ASN ILE SEQRES 5 C 238 ASN SER VAL LEU GLU SER LEU TYR ILE GLU ILE LYS ARG SEQRES 6 C 238 GLY VAL THR GLU ASP ASP GLY ARG PRO ILE TYR ALA LEU SEQRES 7 C 238 VAL ASN LEU ALA THR THR SER ILE SER LYS MET ALA THR SEQRES 8 C 238 ASP PHE ALA GLU ASN GLU LEU ASP LEU PHE ARG LYS ALA SEQRES 9 C 238 LEU GLU LEU ILE ILE ASP SER GLU THR GLY PHE ALA SER SEQRES 10 C 238 SER THR ASN ILE LEU ASN LEU VAL ASP GLN LEU LYS GLY SEQRES 11 C 238 LYS LYS MET ARG LYS LYS GLU ALA GLU GLN VAL LEU GLN SEQRES 12 C 238 LYS PHE VAL GLN ASN LYS TRP LEU ILE GLU LYS GLU GLY SEQRES 13 C 238 GLU PHE THR LEU HIS GLY ARG ALA ILE LEU GLU MET GLU SEQRES 14 C 238 GLN TYR ILE ARG GLU THR TYR PRO ASP ALA VAL LYS ILE SEQRES 15 C 238 CYS ASN ILE CYS HIS SER LEU LEU ILE GLN GLY GLN SER SEQRES 16 C 238 CYS GLU THR CYS GLY ILE ARG MET HIS LEU PRO CYS VAL SEQRES 17 C 238 ALA LYS TYR PHE GLN SER ASN ALA GLU PRO ARG CYS PRO SEQRES 18 C 238 HIS CYS ASN ASP TYR TRP PRO HIS GLU ILE PRO LYS VAL SEQRES 19 C 238 PHE ASP PRO GLU HET ZN C 301 1 HET ZN C 302 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 SER D 81 GLN D 101 1 21 HELIX 2 AA2 ARG D 108 VAL D 115 1 8 HELIX 3 AA3 ASP D 118 ASP D 121 5 4 HELIX 4 AA4 ILE D 122 VAL D 137 1 16 HELIX 5 AA5 THR D 173 GLY D 190 1 18 HELIX 6 AA6 GLU D 195 ARG D 203 1 9 HELIX 7 AA7 LYS D 220 PHE D 227 1 8 HELIX 8 AA8 TRP D 250 LEU D 258 1 9 HELIX 9 AA9 SER D 259 VAL D 270 1 12 HELIX 10 AB1 ASP D 274 ASP D 277 5 4 HELIX 11 AB2 TRP D 278 GLU D 290 1 13 HELIX 12 AB3 THR C 12 HIS C 25 1 14 HELIX 13 AB4 GLU C 30 LYS C 42 1 13 HELIX 14 AB5 LYS C 52 SER C 62 1 11 HELIX 15 AB6 LEU C 64 LEU C 67 5 4 HELIX 16 AB7 ILE C 94 THR C 99 1 6 HELIX 17 AB8 ALA C 102 SER C 119 1 18 HELIX 18 AB9 SER C 126 LEU C 130 1 5 HELIX 19 AC1 ASN C 131 LEU C 136 5 6 HELIX 20 AC2 ARG C 142 ASN C 156 1 15 HELIX 21 AC3 HIS C 169 TYR C 184 1 16 HELIX 22 AC4 HIS C 212 PHE C 220 1 9 SHEET 1 AA1 3 ILE D 106 LYS D 107 0 SHEET 2 AA1 3 THR D 151 ASN D 156 -1 O TYR D 152 N ILE D 106 SHEET 3 AA1 3 TYR D 140 GLU D 144 -1 N VAL D 143 O ILE D 153 SHEET 1 AA2 3 LEU D 193 LYS D 194 0 SHEET 2 AA2 3 GLU D 247 GLN D 249 -1 O PHE D 248 N LEU D 193 SHEET 3 AA2 3 GLU D 234 ARG D 236 -1 N ARG D 236 O GLU D 247 SHEET 1 AA3 3 LEU C 28 GLU C 29 0 SHEET 2 AA3 3 PRO C 82 ASN C 88 -1 O TYR C 84 N LEU C 28 SHEET 3 AA3 3 ILE C 69 VAL C 75 -1 N GLY C 74 O ILE C 83 SHEET 1 AA4 3 ALA C 124 SER C 125 0 SHEET 2 AA4 3 GLU C 165 LEU C 168 -1 O PHE C 166 N ALA C 124 SHEET 3 AA4 3 LEU C 159 LYS C 162 -1 N ILE C 160 O THR C 167 SHEET 1 AA5 2 LYS C 189 ILE C 190 0 SHEET 2 AA5 2 LEU C 197 LEU C 198 -1 O LEU C 198 N LYS C 189 SHEET 1 AA6 2 GLN C 202 SER C 203 0 SHEET 2 AA6 2 ARG C 210 MET C 211 -1 O MET C 211 N GLN C 202 LINK SG CYS C 191 ZN ZN C 301 1555 1555 2.33 LINK SG CYS C 194 ZN ZN C 301 1555 1555 2.29 LINK SG CYS C 204 ZN ZN C 302 1555 1555 2.47 LINK SG CYS C 207 ZN ZN C 302 1555 1555 2.33 LINK ND1 HIS C 212 ZN ZN C 301 1555 1555 2.30 LINK SG CYS C 215 ZN ZN C 301 1555 1555 2.30 LINK SG CYS C 228 ZN ZN C 302 1555 1555 2.36 LINK SG CYS C 231 ZN ZN C 302 1555 1555 2.32 SITE 1 AC1 4 CYS C 191 CYS C 194 HIS C 212 CYS C 215 SITE 1 AC2 4 CYS C 204 CYS C 207 CYS C 228 CYS C 231 CRYST1 83.257 154.327 53.726 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018613 0.00000