PDB Short entry for 5I8W HEADER OXIDOREDUCTASE 19-FEB-16 5I8W TITLE CRYSTAL STRUCTURE OF B. PSEUDOMALLEI FABI IN COMPLEX WITH NAD AND TITLE 2 PT401 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: FABI, FABI_2, ACT79_25590, AM256_11615, AM257_11635, SOURCE 5 AMS56_08605, DP46_2957, DP49_6839, ERS012314_03793, ERS012372_03823, SOURCE 6 SY87_14645, TR70_1075, VU09_13745; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOYL-ACP REDUCTASE, BURKHOLDERIA PSEUDOMALLEI, DIPHENYL ETHERS, KEYWDS 2 SLOW-BINDING INHIBITORS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,S.ELTSCHKNER,P.J.TONGE,C.KISKER REVDAT 4 06-SEP-17 5I8W 1 REMARK REVDAT 3 19-APR-17 5I8W 1 JRNL REVDAT 2 08-MAR-17 5I8W 1 JRNL REVDAT 1 22-FEB-17 5I8W 0 JRNL AUTH C.NECKLES,S.ELTSCHKNER,J.E.CUMMINGS,M.HIRSCHBECK,F.DARYAEE, JRNL AUTH 2 G.R.BOMMINENI,Z.ZHANG,L.SPAGNUOLO,W.YU,S.DAVOODI, JRNL AUTH 3 R.A.SLAYDEN,C.KISKER,P.J.TONGE JRNL TITL RATIONALIZING THE BINDING KINETICS FOR THE INHIBITION OF THE JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI FABI1 ENOYL-ACP REDUCTASE. JRNL REF BIOCHEMISTRY V. 56 1865 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28225601 JRNL DOI 10.1021/ACS.BIOCHEM.6B01048 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 29337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5872 - 3.6201 0.96 2764 130 0.1562 0.1762 REMARK 3 2 3.6201 - 2.8745 0.96 2645 162 0.1565 0.1931 REMARK 3 3 2.8745 - 2.5114 0.95 2645 132 0.1637 0.2014 REMARK 3 4 2.5114 - 2.2819 0.94 2583 129 0.1655 0.1809 REMARK 3 5 2.2819 - 2.1185 0.94 2542 150 0.1566 0.1870 REMARK 3 6 2.1185 - 1.9936 0.92 2494 132 0.1704 0.1702 REMARK 3 7 1.9936 - 1.8938 0.92 2491 146 0.1644 0.2139 REMARK 3 8 1.8938 - 1.8114 0.91 2449 127 0.1752 0.2309 REMARK 3 9 1.8114 - 1.7417 0.91 2467 126 0.1773 0.2355 REMARK 3 10 1.7417 - 1.6816 0.90 2383 148 0.1813 0.1946 REMARK 3 11 1.6816 - 1.6290 0.87 2381 111 0.1889 0.2440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2016 REMARK 3 ANGLE : 1.173 2734 REMARK 3 CHIRALITY : 0.077 312 REMARK 3 PLANARITY : 0.004 346 REMARK 3 DIHEDRAL : 13.917 716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8816 -3.9867 29.2934 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.4125 REMARK 3 T33: 0.2062 T12: -0.1089 REMARK 3 T13: -0.0733 T23: 0.1423 REMARK 3 L TENSOR REMARK 3 L11: 2.0066 L22: 1.2420 REMARK 3 L33: 3.2624 L12: 0.4899 REMARK 3 L13: -1.0560 L23: 0.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: -0.1846 S13: -0.3445 REMARK 3 S21: 0.0078 S22: 0.1064 S23: 0.0060 REMARK 3 S31: 0.2397 S32: -0.7154 S33: -0.1624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0252 -7.0800 18.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.4428 REMARK 3 T33: 0.3000 T12: -0.1615 REMARK 3 T13: -0.1373 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 5.7037 L22: 2.5765 REMARK 3 L33: 0.3701 L12: 1.2090 REMARK 3 L13: -1.1050 L23: -0.8192 REMARK 3 S TENSOR REMARK 3 S11: 0.3037 S12: 0.0141 S13: -0.9365 REMARK 3 S21: -0.1768 S22: -0.0263 S23: 0.0252 REMARK 3 S31: 0.5373 S32: -0.4818 S33: -0.0793 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3472 3.9469 20.2149 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.2193 REMARK 3 T33: 0.1596 T12: -0.0360 REMARK 3 T13: -0.0112 T23: 0.0806 REMARK 3 L TENSOR REMARK 3 L11: 3.3546 L22: 1.0956 REMARK 3 L33: 3.4182 L12: -1.3165 REMARK 3 L13: 0.6462 L23: -0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.0565 S13: 0.0095 REMARK 3 S21: -0.2123 S22: 0.1446 S23: 0.1499 REMARK 3 S31: -0.0637 S32: -0.5050 S33: -0.2080 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4543 -3.2000 25.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0986 REMARK 3 T33: 0.1632 T12: -0.0408 REMARK 3 T13: -0.0255 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.3218 L22: 0.5314 REMARK 3 L33: 1.6952 L12: -0.8084 REMARK 3 L13: -0.0328 L23: -0.5426 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.1002 S13: -0.1221 REMARK 3 S21: -0.0756 S22: 0.0521 S23: -0.0045 REMARK 3 S31: 0.1047 S32: -0.1071 S33: -0.0735 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7939 -2.0276 31.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.1034 REMARK 3 T33: 0.1450 T12: -0.0298 REMARK 3 T13: -0.0283 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8831 L22: 0.1508 REMARK 3 L33: 2.1927 L12: -0.3404 REMARK 3 L13: -0.3545 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.1266 S13: -0.2502 REMARK 3 S21: -0.0486 S22: 0.0149 S23: 0.0718 REMARK 3 S31: 0.1448 S32: -0.1694 S33: -0.0302 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1198 -10.1410 40.9435 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2058 REMARK 3 T33: 0.0929 T12: -0.0716 REMARK 3 T13: -0.0145 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 2.1750 L22: 3.9142 REMARK 3 L33: 2.1211 L12: -1.0383 REMARK 3 L13: 0.5490 L23: -0.9499 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.1461 S13: -0.2559 REMARK 3 S21: -0.1206 S22: 0.1380 S23: 0.2166 REMARK 3 S31: 0.2919 S32: -0.3212 S33: -0.1624 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4671 -8.7892 43.9618 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0850 REMARK 3 T33: 0.0913 T12: -0.0265 REMARK 3 T13: -0.0073 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.9459 L22: 4.1005 REMARK 3 L33: 6.6026 L12: 2.8270 REMARK 3 L13: -0.2577 L23: -1.6043 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.0298 S13: -0.3131 REMARK 3 S21: -0.0962 S22: 0.1007 S23: 0.1328 REMARK 3 S31: 0.3126 S32: -0.0343 S33: -0.1808 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.629 REMARK 200 RESOLUTION RANGE LOW (A) : 28.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.11900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS, PH 6.5, 36 % PEG 300, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.18000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.18000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.84500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.84500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 88.36000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 88.36000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 259 REMARK 465 GLY A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 262 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 LEU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 GLU A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 54 O HOH A 401 1.88 REMARK 500 OE1 GLU A 34 O HOH A 402 1.96 REMARK 500 O HOH A 403 O HOH A 594 1.96 REMARK 500 O HOH A 546 O HOH A 635 2.00 REMARK 500 O HOH A 613 O HOH A 621 2.00 REMARK 500 O HOH A 416 O HOH A 517 2.09 REMARK 500 N GLU A 58 O HOH A 403 2.10 REMARK 500 O HOH A 577 O HOH A 580 2.12 REMARK 500 O HOH A 656 O HOH A 658 2.14 REMARK 500 OE2 GLU A 34 O HOH A 404 2.14 REMARK 500 O HOH A 554 O HOH A 590 2.16 REMARK 500 O SER A 198 O HOH A 405 2.17 REMARK 500 NZ LYS A 29 O HOH A 406 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 616 O HOH A 617 4556 1.85 REMARK 500 O HOH A 406 O HOH A 491 2455 1.89 REMARK 500 O HOH A 614 O HOH A 620 4556 2.06 REMARK 500 O HOH A 442 O HOH A 584 3556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 -26.89 75.99 REMARK 500 ASN A 157 -119.15 48.24 REMARK 500 LYS A 193 86.15 -65.55 REMARK 500 SER A 198 43.74 -78.43 REMARK 500 ASP A 248 25.84 -150.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 201 SER A 202 147.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 661 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 662 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 69H A 302 DBREF1 5I8W A 1 263 UNP A0A069B9A4_BURPE DBREF2 5I8W A A0A069B9A4 1 263 SEQADV 5I8W LYS A 264 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W LEU A 265 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W ALA A 266 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W ALA A 267 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W ALA A 268 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W LEU A 269 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W GLU A 270 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 271 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 272 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 273 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 274 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 275 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8W HIS A 276 UNP A0A069B9A EXPRESSION TAG SEQRES 1 A 276 MET GLY PHE LEU ASP GLY LYS ARG ILE LEU LEU THR GLY SEQRES 2 A 276 LEU LEU SER ASN ARG SER ILE ALA TYR GLY ILE ALA LYS SEQRES 3 A 276 ALA CYS LYS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR SEQRES 4 A 276 VAL GLY ASP ARG PHE LYS ASP ARG ILE THR GLU PHE ALA SEQRES 5 A 276 ALA GLU PHE GLY SER GLU LEU VAL PHE PRO CYS ASP VAL SEQRES 6 A 276 ALA ASP ASP ALA GLN ILE ASP ALA LEU PHE ALA SER LEU SEQRES 7 A 276 LYS THR HIS TRP ASP SER LEU ASP GLY LEU VAL HIS SER SEQRES 8 A 276 ILE GLY PHE ALA PRO ARG GLU ALA ILE ALA GLY ASP PHE SEQRES 9 A 276 LEU ASP GLY LEU THR ARG GLU ASN PHE ARG ILE ALA HIS SEQRES 10 A 276 ASP ILE SER ALA TYR SER PHE PRO ALA LEU ALA LYS ALA SEQRES 11 A 276 ALA LEU PRO MET LEU SER ASP ASP ALA SER LEU LEU THR SEQRES 12 A 276 LEU SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR SEQRES 13 A 276 ASN THR MET GLY LEU ALA LYS ALA ALA LEU GLU ALA SER SEQRES 14 A 276 VAL ARG TYR LEU ALA VAL SER LEU GLY ALA LYS GLY VAL SEQRES 15 A 276 ARG VAL ASN ALA ILE SER ALA GLY PRO ILE LYS THR LEU SEQRES 16 A 276 ALA ALA SER GLY ILE LYS SER PHE GLY LYS ILE LEU ASP SEQRES 17 A 276 PHE VAL GLU SER ASN SER PRO LEU LYS ARG ASN VAL THR SEQRES 18 A 276 ILE GLU GLN VAL GLY ASN ALA GLY ALA PHE LEU LEU SER SEQRES 19 A 276 ASP LEU ALA SER GLY VAL THR ALA GLU VAL MET HIS VAL SEQRES 20 A 276 ASP SER GLY PHE ASN ALA VAL VAL GLY GLY MET ALA GLY SEQRES 21 A 276 LEU GLU GLU LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 22 A 276 HIS HIS HIS HET NAD A 301 44 HET 69H A 302 22 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 69H 4-FLUORO-5-HEXYL-2-(2-METHYLPHENOXY)PHENOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 69H C19 H23 F O2 FORMUL 4 HOH *262(H2 O) HELIX 1 AA1 SER A 19 GLU A 31 1 13 HELIX 2 AA2 GLY A 41 ARG A 43 5 3 HELIX 3 AA3 PHE A 44 PHE A 55 1 12 HELIX 4 AA4 ASP A 67 THR A 80 1 14 HELIX 5 AA5 PRO A 96 ALA A 101 5 6 HELIX 6 AA6 THR A 109 ALA A 121 1 13 HELIX 7 AA7 TYR A 122 LEU A 132 1 11 HELIX 8 AA8 TYR A 146 GLU A 150 5 5 HELIX 9 AA9 ASN A 157 ALA A 179 1 23 HELIX 10 AB1 SER A 202 SER A 214 1 13 HELIX 11 AB2 THR A 221 SER A 234 1 14 HELIX 12 AB3 ASP A 235 SER A 238 5 4 HELIX 13 AB4 GLY A 250 VAL A 254 5 5 SHEET 1 AA1 7 VAL A 60 PRO A 62 0 SHEET 2 AA1 7 GLU A 34 TYR A 39 1 N PHE A 37 O PHE A 61 SHEET 3 AA1 7 ARG A 8 LEU A 11 1 N LEU A 11 O ALA A 36 SHEET 4 AA1 7 LEU A 85 HIS A 90 1 O VAL A 89 N LEU A 10 SHEET 5 AA1 7 LEU A 135 SER A 145 1 O LEU A 142 N HIS A 90 SHEET 6 AA1 7 ARG A 183 ALA A 189 1 O ILE A 187 N SER A 145 SHEET 7 AA1 7 VAL A 244 VAL A 247 1 O MET A 245 N ALA A 186 SITE 1 AC1 28 GLY A 13 LEU A 15 SER A 19 ILE A 20 SITE 2 AC1 28 VAL A 40 CYS A 63 ASP A 64 VAL A 65 SITE 3 AC1 28 SER A 91 ILE A 92 GLY A 93 LEU A 144 SITE 4 AC1 28 SER A 145 TYR A 146 LYS A 163 ALA A 189 SITE 5 AC1 28 GLY A 190 PRO A 191 ILE A 192 THR A 194 SITE 6 AC1 28 ALA A 196 69H A 302 HOH A 431 HOH A 451 SITE 7 AC1 28 HOH A 452 HOH A 464 HOH A 486 HOH A 521 SITE 1 AC2 10 GLY A 93 PHE A 94 TYR A 146 PRO A 154 SITE 2 AC2 10 TYR A 156 ALA A 196 ALA A 197 PHE A 203 SITE 3 AC2 10 ILE A 206 NAD A 301 CRYST1 74.700 75.690 88.360 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011317 0.00000