PDB Short entry for 5IIO HEADER TRANSFERASE/DNA 01-MAR-16 5IIO TITLE CRYSTAL STRUCTURE OF THE DNA POLYMERASE LAMBDA BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*(8OG)P*GP*TP*AP*CP*TP*G)-3'); COMPND 3 CHAIN: B, F, J, N; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'); COMPND 7 CHAIN: C, G, K, O; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 11 CHAIN: D, H, L, P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 15 CHAIN: A, E, I, M; COMPND 16 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 17 KAPPA; COMPND 18 EC: 2.7.7.7,4.2.99.-; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: POLL; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BURAK,K.E.GUJA,M.GARCIA-DIAZ REVDAT 2 28-SEP-16 5IIO 1 JRNL REVDAT 1 17-AUG-16 5IIO 0 JRNL AUTH M.J.BURAK,K.E.GUJA,E.HAMBARDJIEVA,B.DERKUNT,M.GARCIA-DIAZ JRNL TITL A FIDELITY MECHANISM IN DNA POLYMERASE LAMBDA PROMOTES JRNL TITL 2 ERROR-FREE BYPASS OF 8-OXO-DG. JRNL REF EMBO J. V. 35 2045 2016 JRNL REFN ESSN 1460-2075 JRNL PMID 27481934 JRNL DOI 10.15252/EMBJ.201694332 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 118516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0969 - 5.5388 1.00 6566 143 0.1667 0.1984 REMARK 3 2 5.5388 - 4.3975 1.00 6348 137 0.1583 0.1820 REMARK 3 3 4.3975 - 3.8419 1.00 6285 140 0.1538 0.1836 REMARK 3 4 3.8419 - 3.4908 1.00 6265 143 0.1756 0.2089 REMARK 3 5 3.4908 - 3.2407 1.00 6216 135 0.1845 0.2442 REMARK 3 6 3.2407 - 3.0497 1.00 6243 142 0.2117 0.2813 REMARK 3 7 3.0497 - 2.8970 1.00 6198 135 0.2094 0.2635 REMARK 3 8 2.8970 - 2.7709 1.00 6167 139 0.2103 0.2496 REMARK 3 9 2.7709 - 2.6642 1.00 6188 146 0.2158 0.2621 REMARK 3 10 2.6642 - 2.5723 1.00 6202 141 0.2188 0.3073 REMARK 3 11 2.5723 - 2.4919 1.00 6145 132 0.2130 0.2687 REMARK 3 12 2.4919 - 2.4206 1.00 6187 136 0.2144 0.2590 REMARK 3 13 2.4206 - 2.3569 1.00 6174 134 0.2193 0.2695 REMARK 3 14 2.3569 - 2.2994 1.00 6146 135 0.2227 0.2926 REMARK 3 15 2.2994 - 2.2472 1.00 6137 148 0.2317 0.2833 REMARK 3 16 2.2472 - 2.1993 0.98 6039 136 0.2425 0.2658 REMARK 3 17 2.1993 - 2.1553 0.94 5748 136 0.2500 0.3142 REMARK 3 18 2.1553 - 2.1147 0.89 5532 124 0.2553 0.2976 REMARK 3 19 2.1147 - 2.0769 0.83 5132 116 0.2577 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 12276 REMARK 3 ANGLE : 1.028 16941 REMARK 3 CHIRALITY : 0.043 1861 REMARK 3 PLANARITY : 0.005 1913 REMARK 3 DIHEDRAL : 17.885 4626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 45.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KCL, 0.01 M CACL2, 0.05 M HEPES REMARK 280 PH 7.0, AND 10% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 95.71150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 95.71150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, O, P, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA E 242 REMARK 465 GLN E 243 REMARK 465 PRO E 244 REMARK 465 SER E 245 REMARK 465 SER E 246 REMARK 465 GLN E 247 REMARK 465 LYS E 248 REMARK 465 ALA E 249 REMARK 465 THR E 250 REMARK 465 ALA I 242 REMARK 465 GLN I 243 REMARK 465 PRO I 244 REMARK 465 SER I 245 REMARK 465 SER I 246 REMARK 465 GLN I 247 REMARK 465 LYS I 248 REMARK 465 ALA I 249 REMARK 465 ALA M 242 REMARK 465 GLN M 243 REMARK 465 PRO M 244 REMARK 465 SER M 245 REMARK 465 SER M 246 REMARK 465 GLN M 247 REMARK 465 LYS M 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 307 CE NZ REMARK 470 HIS A 321 ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LEU E 254 CG CD1 CD2 REMARK 470 HIS E 255 CG ND1 CD2 CE1 NE2 REMARK 470 LYS E 259 CE NZ REMARK 470 LYS E 265 CG CD CE NZ REMARK 470 LYS E 281 CE NZ REMARK 470 LYS E 287 CD CE NZ REMARK 470 GLN E 354 CD OE1 NE2 REMARK 470 GLU E 361 CG CD OE1 OE2 REMARK 470 GLU E 390 CD OE1 OE2 REMARK 470 LYS E 401 CD CE NZ REMARK 470 ARG E 438 CZ NH1 NH2 REMARK 470 GLN E 453 CG CD OE1 NE2 REMARK 470 VAL E 537 CG1 CG2 REMARK 470 ARG E 538 CZ NH1 NH2 REMARK 470 HIS E 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS E 544 CG CD CE NZ REMARK 470 VAL E 545 CG1 CG2 REMARK 470 TRP E 575 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 575 CZ3 CH2 REMARK 470 THR I 250 OG1 CG2 REMARK 470 HIS I 255 CG ND1 CD2 CE1 NE2 REMARK 470 LYS I 265 NZ REMARK 470 LYS I 324 CD CE NZ REMARK 470 GLU I 330 CG CD OE1 OE2 REMARK 470 LYS I 378 CE NZ REMARK 470 GLU I 390 CG CD OE1 OE2 REMARK 470 LYS I 401 CD CE NZ REMARK 470 GLN I 453 CG CD OE1 NE2 REMARK 470 VAL I 537 CG1 CG2 REMARK 470 THR I 540 OG1 CG2 REMARK 470 HIS I 541 CG ND1 CD2 CE1 NE2 REMARK 470 ALA M 249 N CB REMARK 470 GLU M 390 CD OE1 OE2 REMARK 470 HIS M 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS M 544 CG CD CE NZ REMARK 470 VAL M 545 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 927 O HOH A 964 1.93 REMARK 500 O HOH M 999 O HOH M 1019 2.01 REMARK 500 O HOH A 766 O HOH A 940 2.03 REMARK 500 O HOH A 859 O HOH A 861 2.04 REMARK 500 O HOH M 899 O HOH M 970 2.05 REMARK 500 O HOH F 118 O HOH H 107 2.05 REMARK 500 O HOH M 866 O HOH M 968 2.06 REMARK 500 O HOH I 839 O HOH I 863 2.06 REMARK 500 O HOH A 899 O HOH A 960 2.08 REMARK 500 O HOH A 896 O HOH A 965 2.08 REMARK 500 O HOH M 973 O HOH M 1056 2.10 REMARK 500 N3 DA O 2 O HOH O 101 2.11 REMARK 500 O HOH C 115 O HOH C 118 2.11 REMARK 500 O HOH M 729 O HOH M 938 2.12 REMARK 500 O HOH A 902 O HOH A 921 2.13 REMARK 500 O HOH E 769 O HOH E 829 2.13 REMARK 500 O HOH A 863 O HOH A 904 2.14 REMARK 500 O HOH M 771 O HOH M 996 2.16 REMARK 500 OP1 DG O 3 O HOH O 102 2.16 REMARK 500 O HOH M 966 O HOH M 996 2.17 REMARK 500 O HOH O 111 O HOH M 848 2.17 REMARK 500 OE2 GLU E 466 O HOH E 701 2.17 REMARK 500 O HOH O 121 O HOH M 962 2.18 REMARK 500 O HOH A 883 O HOH A 963 2.18 REMARK 500 O HOH O 119 O HOH A 905 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 805 O HOH M 852 2565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.122 REMARK 500 DG H 1 P DG H 1 OP3 -0.127 REMARK 500 DG L 1 P DG L 1 OP3 -0.117 REMARK 500 DG P 1 P DG P 1 OP3 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG N 11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -141.24 -108.80 REMARK 500 ARG A 438 -31.84 -136.17 REMARK 500 ASN A 539 -165.74 -75.63 REMARK 500 HIS E 252 -13.82 -143.05 REMARK 500 ARG E 386 -177.49 -66.73 REMARK 500 CYS E 415 -138.36 -108.05 REMARK 500 ARG E 438 -35.21 -133.92 REMARK 500 ASN E 539 -152.51 -91.92 REMARK 500 LYS E 544 98.84 -58.96 REMARK 500 VAL E 545 43.82 -104.37 REMARK 500 ARG E 573 42.83 -109.16 REMARK 500 SER I 319 -15.59 -145.41 REMARK 500 ASN I 407 116.09 -161.03 REMARK 500 CYS I 415 -136.03 -107.82 REMARK 500 ASN I 539 -94.96 -79.13 REMARK 500 THR I 540 -41.24 -130.88 REMARK 500 HIS I 541 77.13 58.25 REMARK 500 CYS M 415 -137.06 -113.67 REMARK 500 ARG M 438 -34.89 -132.53 REMARK 500 ALA M 531 149.89 -172.50 REMARK 500 ASN M 539 -164.58 -72.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH M1061 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH M1062 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 5 OP1 REMARK 620 2 SER A 339 O 165.1 REMARK 620 3 ILE A 341 O 92.8 102.0 REMARK 620 4 ALA A 344 O 88.8 94.6 84.6 REMARK 620 5 HOH C 115 O 83.1 93.0 96.8 171.8 REMARK 620 6 HOH C 107 O 86.3 79.2 174.1 89.6 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 3 OP1 REMARK 620 2 CYS A 300 O 174.7 REMARK 620 3 ILE A 302 O 92.8 92.0 REMARK 620 4 ILE A 305 O 98.6 80.0 81.0 REMARK 620 5 HOH A 931 O 95.2 85.4 107.3 163.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA G 5 OP1 REMARK 620 2 SER E 339 O 160.9 REMARK 620 3 ILE E 341 O 99.8 98.0 REMARK 620 4 ALA E 344 O 97.2 89.9 89.4 REMARK 620 5 HOH G 107 O 85.4 83.2 105.3 164.5 REMARK 620 6 HOH G 101 O 82.2 80.3 177.0 88.2 77.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA K 5 OP1 REMARK 620 2 SER I 339 O 171.5 REMARK 620 3 ILE I 341 O 91.3 95.6 REMARK 620 4 ALA I 344 O 91.9 93.7 84.2 REMARK 620 5 HOH K 110 O 88.7 84.8 176.2 92.0 REMARK 620 6 HOH K 113 O 77.0 97.5 95.0 168.8 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA O 5 OP1 REMARK 620 2 SER M 339 O 167.4 REMARK 620 3 ILE M 341 O 96.3 95.9 REMARK 620 4 ALA M 344 O 92.6 91.2 85.7 REMARK 620 5 HOH O 108 O 86.0 82.2 173.1 87.7 REMARK 620 6 HOH M 962 O 88.2 87.5 97.0 177.1 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC P 3 OP1 REMARK 620 2 CYS M 300 O 163.9 REMARK 620 3 ILE M 302 O 91.6 99.2 REMARK 620 4 ILE M 305 O 99.8 92.6 87.2 REMARK 620 5 HOH P 110 O 96.5 73.9 170.7 86.8 REMARK 620 6 HOH M 948 O 87.5 81.3 87.1 170.9 97.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA E 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA I 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA M 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA M 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS A 543 and CYS M REMARK 800 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS A 543 and CYS M REMARK 800 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC J 4 and 8OG J REMARK 800 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 8OG J 5 and DG J REMARK 800 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC N 4 and 8OG N REMARK 800 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 8OG N 5 and DG N REMARK 800 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5III RELATED DB: PDB REMARK 900 RELATED ID: 5IIJ RELATED DB: PDB REMARK 900 RELATED ID: 5IIK RELATED DB: PDB REMARK 900 RELATED ID: 5IIL RELATED DB: PDB REMARK 900 RELATED ID: 5IIM RELATED DB: PDB REMARK 900 RELATED ID: 5IIN RELATED DB: PDB DBREF 5IIO B 1 11 PDB 5IIO 5IIO 1 11 DBREF 5IIO C 1 6 PDB 5IIO 5IIO 1 6 DBREF 5IIO D 1 4 PDB 5IIO 5IIO 1 4 DBREF 5IIO F 1 11 PDB 5IIO 5IIO 1 11 DBREF 5IIO G 1 6 PDB 5IIO 5IIO 1 6 DBREF 5IIO H 1 4 PDB 5IIO 5IIO 1 4 DBREF 5IIO J 1 11 PDB 5IIO 5IIO 1 11 DBREF 5IIO K 1 6 PDB 5IIO 5IIO 1 6 DBREF 5IIO L 1 4 PDB 5IIO 5IIO 1 4 DBREF 5IIO N 1 11 PDB 5IIO 5IIO 1 11 DBREF 5IIO O 1 6 PDB 5IIO 5IIO 1 6 DBREF 5IIO P 1 4 PDB 5IIO 5IIO 1 4 DBREF 5IIO A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5IIO E 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5IIO I 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5IIO M 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 SEQRES 1 B 11 DC DG DG DC 8OG DG DT DA DC DT DG SEQRES 1 C 6 DC DA DG DT DA DC SEQRES 1 D 4 DG DC DC DG SEQRES 1 F 11 DC DG DG DC 8OG DG DT DA DC DT DG SEQRES 1 G 6 DC DA DG DT DA DC SEQRES 1 H 4 DG DC DC DG SEQRES 1 J 11 DC DG DG DC 8OG DG DT DA DC DT DG SEQRES 1 K 6 DC DA DG DT DA DC SEQRES 1 L 4 DG DC DC DG SEQRES 1 N 11 DC DG DG DC 8OG DG DT DA DC DT DG SEQRES 1 O 6 DC DA DG DT DA DC SEQRES 1 P 4 DG DC DC DG SEQRES 1 A 334 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 334 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 334 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 334 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 334 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 334 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 334 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 334 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 334 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 334 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 334 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 334 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 334 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 334 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 334 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 334 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 334 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 334 SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY SEQRES 19 A 334 VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG SEQRES 20 A 334 LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA CYS SEQRES 21 A 334 ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN ARG SEQRES 22 A 334 SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER LEU SEQRES 23 A 334 SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN THR SEQRES 24 A 334 HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO THR SEQRES 25 A 334 PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO SEQRES 26 A 334 TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 E 334 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 E 334 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 E 334 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 E 334 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 E 334 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 E 334 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 E 334 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 E 334 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 E 334 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 E 334 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 E 334 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 E 334 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 E 334 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 E 334 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 E 334 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 E 334 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 E 334 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 E 334 SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY SEQRES 19 E 334 VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG SEQRES 20 E 334 LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA CYS SEQRES 21 E 334 ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN ARG SEQRES 22 E 334 SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER LEU SEQRES 23 E 334 SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN THR SEQRES 24 E 334 HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO THR SEQRES 25 E 334 PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO SEQRES 26 E 334 TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 I 334 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 I 334 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 I 334 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 I 334 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 I 334 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 I 334 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 I 334 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 I 334 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 I 334 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 I 334 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 I 334 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 I 334 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 I 334 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 I 334 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 I 334 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 I 334 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 I 334 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 I 334 SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY SEQRES 19 I 334 VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG SEQRES 20 I 334 LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA CYS SEQRES 21 I 334 ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN ARG SEQRES 22 I 334 SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER LEU SEQRES 23 I 334 SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN THR SEQRES 24 I 334 HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO THR SEQRES 25 I 334 PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO SEQRES 26 I 334 TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 M 334 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 M 334 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 M 334 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 M 334 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 M 334 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 M 334 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 M 334 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 M 334 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 M 334 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 M 334 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 M 334 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 M 334 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 M 334 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 M 334 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 M 334 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 M 334 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 M 334 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 M 334 SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY SEQRES 19 M 334 VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG SEQRES 20 M 334 LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA CYS SEQRES 21 M 334 ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN ARG SEQRES 22 M 334 SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER LEU SEQRES 23 M 334 SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN THR SEQRES 24 M 334 HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO THR SEQRES 25 M 334 PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO SEQRES 26 M 334 TYR ARG GLU PRO ALA GLU ARG ASP TRP HET 8OG B 5 23 HET 8OG F 5 23 HET 8OG J 5 23 HET 8OG N 5 23 HET NA A 601 1 HET NA A 602 1 HET NA E 601 1 HET NA I 601 1 HET NA M 601 1 HET NA M 602 1 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM NA SODIUM ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 8OG 4(C10 H14 N5 O8 P) FORMUL 17 NA 6(NA 1+) FORMUL 23 HOH *1213(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 GLU A 385 1 7 HELIX 11 AB2 ARG A 389 ALA A 405 1 17 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 GLY A 442 GLU A 454 1 13 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ARG A 573 5 5 HELIX 19 AC1 ASN E 253 GLN E 270 1 18 HELIX 20 AC2 ASP E 272 PHE E 289 1 18 HELIX 21 AC3 SER E 295 SER E 301 1 7 HELIX 22 AC4 GLY E 306 GLY E 320 1 15 HELIX 23 AC5 LEU E 322 HIS E 327 5 6 HELIX 24 AC6 SER E 331 ASN E 340 1 10 HELIX 25 AC7 GLY E 345 GLN E 355 1 11 HELIX 26 AC8 SER E 359 ALA E 367 1 9 HELIX 27 AC9 THR E 370 HIS E 379 1 10 HELIX 28 AD1 HIS E 379 LEU E 384 1 6 HELIX 29 AD2 ARG E 389 ALA E 405 1 17 HELIX 30 AD3 CYS E 415 ARG E 420 1 6 HELIX 31 AD4 GLY E 442 GLU E 454 1 13 HELIX 32 AD5 PRO E 495 SER E 497 5 3 HELIX 33 AD6 GLU E 498 GLY E 508 1 11 HELIX 34 AD7 SER E 509 LYS E 523 1 15 HELIX 35 AD8 THR E 555 GLY E 564 1 10 HELIX 36 AD9 GLU E 569 ARG E 573 5 5 HELIX 37 AE1 ASN I 253 GLN I 270 1 18 HELIX 38 AE2 ASP I 272 SER I 288 1 17 HELIX 39 AE3 SER I 295 SER I 301 1 7 HELIX 40 AE4 GLY I 306 GLY I 320 1 15 HELIX 41 AE5 LEU I 322 HIS I 327 5 6 HELIX 42 AE6 SER I 331 ASN I 340 1 10 HELIX 43 AE7 GLY I 345 GLN I 355 1 11 HELIX 44 AE8 SER I 359 ALA I 367 1 9 HELIX 45 AE9 THR I 370 HIS I 379 1 10 HELIX 46 AF1 HIS I 379 GLU I 385 1 7 HELIX 47 AF2 ARG I 389 ASN I 407 1 19 HELIX 48 AF3 CYS I 415 ARG I 420 1 6 HELIX 49 AF4 GLY I 442 GLU I 454 1 13 HELIX 50 AF5 PRO I 495 SER I 497 5 3 HELIX 51 AF6 GLU I 498 GLY I 508 1 11 HELIX 52 AF7 SER I 509 LYS I 523 1 15 HELIX 53 AF8 THR I 555 LEU I 563 1 9 HELIX 54 AF9 GLU I 569 ARG I 573 5 5 HELIX 55 AG1 ASN M 253 GLY M 271 1 19 HELIX 56 AG2 ASP M 272 PHE M 289 1 18 HELIX 57 AG3 SER M 295 SER M 301 1 7 HELIX 58 AG4 GLY M 306 GLY M 320 1 15 HELIX 59 AG5 LEU M 322 HIS M 327 5 6 HELIX 60 AG6 SER M 331 ASN M 340 1 10 HELIX 61 AG7 GLY M 345 GLN M 355 1 11 HELIX 62 AG8 SER M 359 ALA M 367 1 9 HELIX 63 AG9 THR M 370 HIS M 379 1 10 HELIX 64 AH1 HIS M 379 GLU M 385 1 7 HELIX 65 AH2 ARG M 389 ALA M 405 1 17 HELIX 66 AH3 CYS M 415 ARG M 420 1 6 HELIX 67 AH4 ILE M 443 GLU M 454 1 12 HELIX 68 AH5 PRO M 495 SER M 497 5 3 HELIX 69 AH6 GLU M 498 GLY M 508 1 11 HELIX 70 AH7 SER M 509 LYS M 523 1 15 HELIX 71 AH8 THR M 555 LEU M 563 1 9 HELIX 72 AH9 GLU M 569 ARG M 573 5 5 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 GLN A 470 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 ASN A 467 -1 N VAL A 462 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 VAL A 550 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 SHEET 1 AA5 2 MET E 387 PRO E 388 0 SHEET 2 AA5 2 THR E 424 CYS E 425 -1 O CYS E 425 N MET E 387 SHEET 1 AA6 5 LEU E 411 ALA E 414 0 SHEET 2 AA6 5 VAL E 428 THR E 433 -1 O LEU E 431 N VAL E 413 SHEET 3 AA6 5 ARG E 487 VAL E 493 1 O ILE E 492 N ILE E 432 SHEET 4 AA6 5 GLN E 470 CYS E 477 -1 N CYS E 477 O ARG E 487 SHEET 5 AA6 5 LEU E 457 ASN E 467 -1 N VAL E 462 O LEU E 474 SHEET 1 AA7 3 MET E 525 LEU E 527 0 SHEET 2 AA7 3 LEU E 532 THR E 534 -1 O SER E 533 N SER E 526 SHEET 3 AA7 3 VAL E 550 LEU E 551 -1 O LEU E 551 N LEU E 532 SHEET 1 AA8 2 MET I 387 PRO I 388 0 SHEET 2 AA8 2 THR I 424 CYS I 425 -1 O CYS I 425 N MET I 387 SHEET 1 AA9 5 LEU I 411 ALA I 414 0 SHEET 2 AA9 5 VAL I 428 THR I 433 -1 O LEU I 431 N VAL I 413 SHEET 3 AA9 5 ARG I 487 VAL I 493 1 O ILE I 492 N ILE I 432 SHEET 4 AA9 5 GLN I 470 CYS I 477 -1 N CYS I 477 O ARG I 487 SHEET 5 AA9 5 LEU I 457 ASN I 467 -1 N VAL I 462 O LEU I 474 SHEET 1 AB1 3 MET I 525 LEU I 527 0 SHEET 2 AB1 3 LEU I 532 THR I 534 -1 O SER I 533 N SER I 526 SHEET 3 AB1 3 VAL I 550 LEU I 551 -1 O LEU I 551 N LEU I 532 SHEET 1 AB2 2 MET M 387 PRO M 388 0 SHEET 2 AB2 2 THR M 424 CYS M 425 -1 O CYS M 425 N MET M 387 SHEET 1 AB3 5 LEU M 411 ALA M 414 0 SHEET 2 AB3 5 VAL M 428 THR M 433 -1 O THR M 433 N LEU M 411 SHEET 3 AB3 5 ARG M 487 VAL M 493 1 O ILE M 492 N ILE M 432 SHEET 4 AB3 5 GLN M 470 CYS M 477 -1 N GLY M 475 O LEU M 489 SHEET 5 AB3 5 LEU M 457 ASN M 467 -1 N VAL M 462 O LEU M 474 SHEET 1 AB4 3 MET M 525 LEU M 527 0 SHEET 2 AB4 3 LEU M 532 THR M 534 -1 O SER M 533 N SER M 526 SHEET 3 AB4 3 VAL M 550 LEU M 551 -1 O LEU M 551 N LEU M 532 SSBOND 1 CYS A 543 CYS M 543 1555 1555 2.03 SSBOND 2 CYS E 543 CYS I 543 1555 2565 2.03 LINK O3' DC B 4 P 8OG B 5 1555 1555 1.62 LINK O3' 8OG B 5 P DG B 6 1555 1555 1.61 LINK OP1 DA C 5 NA NA A 601 1555 1555 2.50 LINK OP1 DC D 3 NA NA A 602 1555 1555 2.84 LINK O3' DC F 4 P 8OG F 5 1555 1555 1.61 LINK O3' 8OG F 5 P DG F 6 1555 1555 1.61 LINK OP1 DA G 5 NA NA E 601 1555 1555 2.38 LINK O3' DC J 4 P 8OG J 5 1555 1555 1.61 LINK O3' 8OG J 5 P DG J 6 1555 1555 1.61 LINK OP1 DA K 5 NA NA I 601 1555 1555 2.41 LINK O3' DC N 4 P 8OG N 5 1555 1555 1.61 LINK O3' 8OG N 5 P DG N 6 1555 1555 1.61 LINK OP1 DA O 5 NA NA M 601 1555 1555 2.39 LINK OP1 DC P 3 NA NA M 602 1555 1555 2.83 LINK O CYS A 300 NA NA A 602 1555 1555 2.81 LINK O ILE A 302 NA NA A 602 1555 1555 2.46 LINK O ILE A 305 NA NA A 602 1555 1555 2.76 LINK O SER A 339 NA NA A 601 1555 1555 2.30 LINK O ILE A 341 NA NA A 601 1555 1555 2.57 LINK O ALA A 344 NA NA A 601 1555 1555 2.30 LINK CB CYS A 543 SG CYS M 543 1555 1555 1.62 LINK SG CYS A 543 CB CYS M 543 1555 1555 1.91 LINK O SER E 339 NA NA E 601 1555 1555 2.51 LINK O ILE E 341 NA NA E 601 1555 1555 2.42 LINK O ALA E 344 NA NA E 601 1555 1555 2.46 LINK O SER I 339 NA NA I 601 1555 1555 2.29 LINK O ILE I 341 NA NA I 601 1555 1555 2.58 LINK O ALA I 344 NA NA I 601 1555 1555 2.44 LINK O CYS M 300 NA NA M 602 1555 1555 2.79 LINK O ILE M 302 NA NA M 602 1555 1555 2.55 LINK O ILE M 305 NA NA M 602 1555 1555 2.28 LINK O SER M 339 NA NA M 601 1555 1555 2.40 LINK O ILE M 341 NA NA M 601 1555 1555 2.51 LINK O ALA M 344 NA NA M 601 1555 1555 2.37 LINK NA NA A 601 O HOH C 115 1555 1555 2.39 LINK NA NA A 601 O HOH C 107 1555 1555 2.54 LINK NA NA A 602 O HOH A 931 1555 1555 2.33 LINK NA NA E 601 O HOH G 107 1555 1555 2.64 LINK NA NA E 601 O HOH G 101 1555 1555 2.56 LINK NA NA I 601 O HOH K 110 1555 1555 2.46 LINK NA NA I 601 O HOH K 113 1555 1555 2.64 LINK NA NA M 601 O HOH O 108 1555 1555 2.57 LINK NA NA M 601 O HOH M 962 1555 1555 2.50 LINK NA NA M 602 O HOH P 110 1555 1555 2.46 LINK NA NA M 602 O HOH M 948 1555 1555 2.20 CISPEP 1 GLY A 508 SER A 509 0 -1.69 CISPEP 2 GLY E 508 SER E 509 0 2.81 CISPEP 3 GLY I 508 SER I 509 0 0.51 CISPEP 4 THR I 540 HIS I 541 0 17.42 CISPEP 5 GLY M 508 SER M 509 0 -0.90 SITE 1 AC1 6 SER A 339 ILE A 341 ALA A 344 DA C 5 SITE 2 AC1 6 HOH C 107 HOH C 115 SITE 1 AC2 6 CYS A 300 ILE A 302 ILE A 305 HOH A 931 SITE 2 AC2 6 DC D 3 LYS M 307 SITE 1 AC3 6 SER E 339 ILE E 341 ALA E 344 DA G 5 SITE 2 AC3 6 HOH G 101 HOH G 107 SITE 1 AC4 6 SER I 339 ILE I 341 ALA I 344 DA K 5 SITE 2 AC4 6 HOH K 110 HOH K 113 SITE 1 AC5 6 SER M 339 ILE M 341 ALA M 344 HOH M 962 SITE 2 AC5 6 DA O 5 HOH O 108 SITE 1 AC6 6 CYS M 300 ILE M 302 ILE M 305 HOH M 948 SITE 2 AC6 6 DC P 3 HOH P 110 SITE 1 AC7 13 VAL A 537 ARG A 538 ASN A 539 HIS A 541 SITE 2 AC7 13 GLY A 542 LYS A 544 VAL A 545 VAL M 537 SITE 3 AC7 13 ARG M 538 ASN M 539 GLY M 542 LYS M 544 SITE 4 AC7 13 VAL M 545 SITE 1 AC8 13 VAL A 537 ARG A 538 ASN A 539 HIS A 541 SITE 2 AC8 13 GLY A 542 LYS A 544 VAL A 545 VAL M 537 SITE 3 AC8 13 ARG M 538 ASN M 539 GLY M 542 LYS M 544 SITE 4 AC8 13 VAL M 545 SITE 1 AC9 14 TRP I 274 LEU I 277 TYR I 505 ARG I 514 SITE 2 AC9 14 ARG I 517 LYS I 521 HOH I 705 HOH I 756 SITE 3 AC9 14 DG J 3 DG J 6 HOH J 108 HOH J 109 SITE 4 AC9 14 HOH J 115 DG L 1 SITE 1 AD1 12 TYR I 505 ARG I 514 ARG I 517 HOH I 705 SITE 2 AD1 12 HOH I 756 DC J 4 DT J 7 HOH J 112 SITE 3 AD1 12 HOH J 115 HOH J 118 DA K 5 DC K 6 SITE 1 AD2 17 TRP M 274 LEU M 277 TYR M 505 ARG M 514 SITE 2 AD2 17 ARG M 517 LYS M 521 HOH M 741 DG N 3 SITE 3 AD2 17 DG N 6 HOH N 101 HOH N 103 HOH N 107 SITE 4 AD2 17 HOH N 108 HOH N 117 HOH N 121 HOH N 123 SITE 5 AD2 17 DG P 1 SITE 1 AD3 17 TYR M 505 ARG M 514 ARG M 517 HOH M 741 SITE 2 AD3 17 HOH M 883 DC N 4 DT N 7 HOH N 101 SITE 3 AD3 17 HOH N 103 HOH N 107 HOH N 114 HOH N 115 SITE 4 AD3 17 HOH N 121 HOH N 123 HOH N 127 DA O 5 SITE 5 AD3 17 DC O 6 CRYST1 191.423 98.980 105.034 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005224 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009521 0.00000