PDB Short entry for 5IL2 HEADER RNA BINDING PROTEIN 04-MAR-16 5IL2 TITLE CRYSTAL STRUCTURE OF SAH-BOUND METTL3-METTL14 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: METTL3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 369-580; COMPND 5 SYNONYM: MT-A70,METHYLTRANSFERASE-LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.62; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: METTL14; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 109-408; COMPND 12 SYNONYM: METHYLTRANSFERASE-LIKE PROTEIN 14; COMPND 13 EC: 2.1.1.62; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: METTL14; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS 6-ADENOSINE METHYLATION, METTL3-METTL14 COMPLEX, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Z.GUAN,T.ZOU,P.YIN REVDAT 2 29-JUN-16 5IL2 1 JRNL REVDAT 1 25-MAY-16 5IL2 0 JRNL AUTH X.WANG,J.FENG,Y.XUE,Z.GUAN,D.ZHANG,Z.LIU,Z.GONG,Q.WANG, JRNL AUTH 2 J.HUANG,C.TANG,T.ZOU,P.YIN JRNL TITL STRUCTURAL BASIS OF N6-ADENOSINE METHYLATION BY THE JRNL TITL 2 METTL3-METTL14 COMPLEX JRNL REF NATURE V. 534 575 2016 JRNL REFN ISSN 0028-0836 JRNL PMID 27281194 JRNL DOI 10.1038/NATURE18298 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 79742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2580 - 4.9306 1.00 2888 133 0.1957 0.2002 REMARK 3 2 4.9306 - 3.9148 1.00 2713 132 0.1446 0.1479 REMARK 3 3 3.9148 - 3.4203 1.00 2661 148 0.1691 0.1617 REMARK 3 4 3.4203 - 3.1077 1.00 2689 130 0.1790 0.2049 REMARK 3 5 3.1077 - 2.8851 1.00 2627 148 0.1855 0.2120 REMARK 3 6 2.8851 - 2.7150 1.00 2644 134 0.1887 0.1889 REMARK 3 7 2.7150 - 2.5791 1.00 2618 140 0.1833 0.2035 REMARK 3 8 2.5791 - 2.4668 1.00 2629 140 0.1889 0.2200 REMARK 3 9 2.4668 - 2.3719 1.00 2593 132 0.1916 0.1925 REMARK 3 10 2.3719 - 2.2900 1.00 2648 136 0.1862 0.2079 REMARK 3 11 2.2900 - 2.2184 1.00 2599 126 0.1848 0.2127 REMARK 3 12 2.2184 - 2.1550 1.00 2621 121 0.1824 0.2003 REMARK 3 13 2.1550 - 2.0983 1.00 2583 147 0.1820 0.2032 REMARK 3 14 2.0983 - 2.0471 1.00 2602 138 0.1901 0.2026 REMARK 3 15 2.0471 - 2.0006 1.00 2568 143 0.1940 0.2272 REMARK 3 16 2.0006 - 1.9580 1.00 2611 139 0.1919 0.2009 REMARK 3 17 1.9580 - 1.9188 1.00 2578 146 0.1912 0.2359 REMARK 3 18 1.9188 - 1.8826 1.00 2566 152 0.1889 0.1954 REMARK 3 19 1.8826 - 1.8490 1.00 2580 139 0.2049 0.2078 REMARK 3 20 1.8490 - 1.8177 1.00 2567 152 0.2069 0.2181 REMARK 3 21 1.8177 - 1.7883 1.00 2588 138 0.2145 0.2614 REMARK 3 22 1.7883 - 1.7608 1.00 2565 147 0.2068 0.2373 REMARK 3 23 1.7608 - 1.7349 1.00 2575 130 0.2146 0.2651 REMARK 3 24 1.7349 - 1.7105 1.00 2589 133 0.2274 0.2459 REMARK 3 25 1.7105 - 1.6874 1.00 2590 153 0.2249 0.2564 REMARK 3 26 1.6874 - 1.6655 1.00 2528 164 0.2334 0.2592 REMARK 3 27 1.6655 - 1.6446 1.00 2558 139 0.2457 0.2886 REMARK 3 28 1.6446 - 1.6248 1.00 2587 126 0.2536 0.2612 REMARK 3 29 1.6248 - 1.6059 0.98 2549 122 0.2665 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4120 REMARK 3 ANGLE : 1.311 5589 REMARK 3 CHIRALITY : 0.079 596 REMARK 3 PLANARITY : 0.007 723 REMARK 3 DIHEDRAL : 22.789 1554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.2913 21.0225 17.7430 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.1288 REMARK 3 T33: 0.1652 T12: -0.0345 REMARK 3 T13: -0.0284 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.0051 L22: 1.0074 REMARK 3 L33: 1.4424 L12: 0.1348 REMARK 3 L13: 0.5440 L23: 0.5467 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: -0.1065 S13: -0.1396 REMARK 3 S21: 0.3646 S22: -0.0206 S23: -0.0612 REMARK 3 S31: 0.3005 S32: -0.0727 S33: -0.0697 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.606 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CITRATE, PH 5.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.91750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.93250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.93250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.95875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.93250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.93250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.87625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.93250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.93250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.95875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.93250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.93250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.87625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.91750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 571 REMARK 465 GLY A 572 REMARK 465 ILE A 573 REMARK 465 ILE A 574 REMARK 465 SER A 575 REMARK 465 LYS A 576 REMARK 465 PRO A 577 REMARK 465 LYS A 578 REMARK 465 ASN A 579 REMARK 465 LEU A 580 REMARK 465 GLY B 109 REMARK 465 THR B 110 REMARK 465 GLN B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 ASN B 114 REMARK 465 PRO B 115 REMARK 465 HIS B 116 REMARK 465 GLY B 203 REMARK 465 LYS B 403 REMARK 465 SER B 404 REMARK 465 LYS B 405 REMARK 465 SER B 406 REMARK 465 ASP B 407 REMARK 465 ARG B 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 202 OG1 CG2 REMARK 470 LYS B 209 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 727 O HOH B 732 1.82 REMARK 500 NE1 TRP A 544 O HOH A 701 1.90 REMARK 500 O HOH B 686 O HOH B 802 1.90 REMARK 500 O PRO A 570 O HOH A 702 1.93 REMARK 500 O HOH B 772 O HOH B 834 1.96 REMARK 500 O HOH B 730 O HOH B 806 1.97 REMARK 500 O HOH B 623 O HOH B 733 2.04 REMARK 500 O HOH B 613 O HOH B 727 2.04 REMARK 500 O HOH B 717 O HOH B 823 2.06 REMARK 500 O HOH B 747 O HOH B 846 2.06 REMARK 500 O HOH B 763 O HOH B 838 2.14 REMARK 500 OH TYR B 199 O HOH B 601 2.14 REMARK 500 O HOH B 746 O HOH B 798 2.16 REMARK 500 O HOH A 796 O HOH B 723 2.16 REMARK 500 O HOH A 749 O HOH A 806 2.17 REMARK 500 O HOH A 703 O HOH A 761 2.18 REMARK 500 O PRO B 402 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 703 O HOH B 799 7555 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 217 CG - SD - CE ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 382 93.74 -67.90 REMARK 500 ASN A 543 -1.22 74.88 REMARK 500 ASP B 136 61.50 62.77 REMARK 500 PHE B 143 34.14 -99.65 REMARK 500 PRO B 184 -163.44 -76.74 REMARK 500 THR B 272 -141.02 -115.06 REMARK 500 THR B 274 31.53 -146.52 REMARK 500 ASP B 276 104.87 -169.10 REMARK 500 ASP B 312 35.99 -84.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 814 DISTANCE = 6.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IL0 RELATED DB: PDB REMARK 900 RELATED ID: 5IL1 RELATED DB: PDB DBREF 5IL2 A 369 580 UNP Q86U44 MTA70_HUMAN 369 580 DBREF 5IL2 B 109 408 UNP Q9HCE5 MET14_HUMAN 109 408 SEQRES 1 A 212 PHE PRO PRO GLN TRP ILE CYS CYS ASP ILE ARG TYR LEU SEQRES 2 A 212 ASP VAL SER ILE LEU GLY LYS PHE ALA VAL VAL MET ALA SEQRES 3 A 212 ASP PRO PRO TRP ASP ILE HIS MET GLU LEU PRO TYR GLY SEQRES 4 A 212 THR LEU THR ASP ASP GLU MET ARG ARG LEU ASN ILE PRO SEQRES 5 A 212 VAL LEU GLN ASP ASP GLY PHE LEU PHE LEU TRP VAL THR SEQRES 6 A 212 GLY ARG ALA MET GLU LEU GLY ARG GLU CYS LEU ASN LEU SEQRES 7 A 212 TRP GLY TYR GLU ARG VAL ASP GLU ILE ILE TRP VAL LYS SEQRES 8 A 212 THR ASN GLN LEU GLN ARG ILE ILE ARG THR GLY ARG THR SEQRES 9 A 212 GLY HIS TRP LEU ASN HIS GLY LYS GLU HIS CYS LEU VAL SEQRES 10 A 212 GLY VAL LYS GLY ASN PRO GLN GLY PHE ASN GLN GLY LEU SEQRES 11 A 212 ASP CYS ASP VAL ILE VAL ALA GLU VAL ARG SER THR SER SEQRES 12 A 212 HIS LYS PRO ASP GLU ILE TYR GLY MET ILE GLU ARG LEU SEQRES 13 A 212 SER PRO GLY THR ARG LYS ILE GLU LEU PHE GLY ARG PRO SEQRES 14 A 212 HIS ASN VAL GLN PRO ASN TRP ILE THR LEU GLY ASN GLN SEQRES 15 A 212 LEU ASP GLY ILE HIS LEU LEU ASP PRO ASP VAL VAL ALA SEQRES 16 A 212 ARG PHE LYS GLN ARG TYR PRO ASP GLY ILE ILE SER LYS SEQRES 17 A 212 PRO LYS ASN LEU SEQRES 1 B 300 GLY THR GLN SER LEU ASN PRO HIS ASN ASP TYR CYS GLN SEQRES 2 B 300 HIS PHE VAL ASP THR GLY HIS ARG PRO GLN ASN PHE ILE SEQRES 3 B 300 ARG ASP VAL GLY LEU ALA ASP ARG PHE GLU GLU TYR PRO SEQRES 4 B 300 LYS LEU ARG GLU LEU ILE ARG LEU LYS ASP GLU LEU ILE SEQRES 5 B 300 ALA LYS SER ASN THR PRO PRO MET TYR LEU GLN ALA ASP SEQRES 6 B 300 ILE GLU ALA PHE ASP ILE ARG GLU LEU THR PRO LYS PHE SEQRES 7 B 300 ASP VAL ILE LEU LEU GLU PRO PRO LEU GLU GLU TYR TYR SEQRES 8 B 300 ARG GLU THR GLY ILE THR ALA ASN GLU LYS CYS TRP THR SEQRES 9 B 300 TRP ASP ASP ILE MET LYS LEU GLU ILE ASP GLU ILE ALA SEQRES 10 B 300 ALA PRO ARG SER PHE ILE PHE LEU TRP CYS GLY SER GLY SEQRES 11 B 300 GLU GLY LEU ASP LEU GLY ARG VAL CYS LEU ARG LYS TRP SEQRES 12 B 300 GLY TYR ARG ARG CYS GLU ASP ILE CYS TRP ILE LYS THR SEQRES 13 B 300 ASN LYS ASN ASN PRO GLY LYS THR LYS THR LEU ASP PRO SEQRES 14 B 300 LYS ALA VAL PHE GLN ARG THR LYS GLU HIS CYS LEU MET SEQRES 15 B 300 GLY ILE LYS GLY THR VAL LYS ARG SER THR ASP GLY ASP SEQRES 16 B 300 PHE ILE HIS ALA ASN VAL ASP ILE ASP LEU ILE ILE THR SEQRES 17 B 300 GLU GLU PRO GLU ILE GLY ASN ILE GLU LYS PRO VAL GLU SEQRES 18 B 300 ILE PHE HIS ILE ILE GLU HIS PHE CYS LEU GLY ARG ARG SEQRES 19 B 300 ARG LEU HIS LEU PHE GLY ARG ASP SER THR ILE ARG PRO SEQRES 20 B 300 GLY TRP LEU THR VAL GLY PRO THR LEU THR ASN SER ASN SEQRES 21 B 300 TYR ASN ALA GLU THR TYR ALA SER TYR PHE SER ALA PRO SEQRES 22 B 300 ASN SER TYR LEU THR GLY CYS THR GLU GLU ILE GLU ARG SEQRES 23 B 300 LEU ARG PRO LYS SEP PRO PRO PRO LYS SER LYS SER ASP SEQRES 24 B 300 ARG MODRES 5IL2 SEP B 399 SER MODIFIED RESIDUE HET SEP B 399 10 HET SAH A 601 26 HET EDO A 602 4 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HETNAM SEP PHOSPHOSERINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *376(H2 O) HELIX 1 AA1 ASP A 382 GLY A 387 5 6 HELIX 2 AA2 THR A 410 LEU A 417 1 8 HELIX 3 AA3 ASN A 418 GLN A 423 5 6 HELIX 4 AA4 ARG A 435 TRP A 447 1 13 HELIX 5 AA5 ASP A 515 SER A 525 1 11 HELIX 6 AA6 ARG A 536 VAL A 540 5 5 HELIX 7 AA7 ASP A 558 TYR A 569 1 12 HELIX 8 AA8 ASP B 118 GLY B 127 1 10 HELIX 9 AA9 ARG B 129 ILE B 134 5 6 HELIX 10 AB1 TYR B 146 ASN B 164 1 19 HELIX 11 AB2 ASP B 178 LEU B 182 5 5 HELIX 12 AB3 LEU B 195 GLU B 201 1 7 HELIX 13 AB4 THR B 212 LYS B 218 1 7 HELIX 14 AB5 GLU B 220 GLU B 223 5 4 HELIX 15 AB6 GLU B 239 GLY B 252 1 14 HELIX 16 AB7 VAL B 328 CYS B 338 1 11 HELIX 17 AB8 ARG B 349 ILE B 353 5 5 HELIX 18 AB9 ASN B 370 TYR B 377 1 8 HELIX 19 AC1 THR B 389 ARG B 396 1 8 SHEET 1 AA1 9 VAL A 502 GLU A 506 0 SHEET 2 AA1 9 GLU A 450 THR A 460 1 N VAL A 458 O ILE A 503 SHEET 3 AA1 9 LYS A 480 LYS A 488 -1 O GLU A 481 N TRP A 457 SHEET 4 AA1 9 GLY A 426 VAL A 432 -1 N LEU A 430 O LEU A 484 SHEET 5 AA1 9 VAL A 391 ALA A 394 1 N ALA A 394 O PHE A 429 SHEET 6 AA1 9 LYS A 530 LEU A 533 1 O LEU A 533 N MET A 393 SHEET 7 AA1 9 TRP A 544 GLY A 548 1 O LEU A 547 N GLU A 532 SHEET 8 AA1 9 GLN A 372 CYS A 375 1 N ILE A 374 O THR A 546 SHEET 9 AA1 9 ILE A 554 HIS A 555 -1 O HIS A 555 N TRP A 373 SHEET 1 AA2 8 MET B 168 GLN B 171 0 SHEET 2 AA2 8 LEU B 358 GLY B 361 1 O THR B 359 N MET B 168 SHEET 3 AA2 8 ARG B 343 LEU B 346 1 N HIS B 345 O LEU B 358 SHEET 4 AA2 8 PHE B 186 LEU B 191 1 N LEU B 190 O LEU B 344 SHEET 5 AA2 8 ALA B 225 TRP B 234 1 O PHE B 232 N LEU B 191 SHEET 6 AA2 8 LYS B 285 LYS B 293 -1 O LEU B 289 N LEU B 233 SHEET 7 AA2 8 ARG B 254 THR B 264 -1 N TRP B 261 O GLU B 286 SHEET 8 AA2 8 LEU B 313 GLU B 317 1 O ILE B 314 N ILE B 262 SSBOND 1 MET B 217 MET B 217 1555 7555 2.09 LINK C LYS B 398 N SEP B 399 1555 1555 1.31 LINK C SEP B 399 N PRO B 400 1555 1555 1.38 CISPEP 1 THR B 183 PRO B 184 0 -3.35 CISPEP 2 PRO B 269 GLY B 270 0 8.04 CISPEP 3 ALA B 380 PRO B 381 0 6.82 SITE 1 AC1 18 CYS A 376 ASP A 377 ILE A 378 ASP A 395 SITE 2 AC1 18 PRO A 397 LEU A 409 SER A 511 HIS A 512 SITE 3 AC1 18 LYS A 513 PHE A 534 ARG A 536 HIS A 538 SITE 4 AC1 18 ASN A 539 ASN A 549 GLN A 550 HOH A 710 SITE 5 AC1 18 HOH A 727 HOH A 772 SITE 1 AC2 5 ASN A 445 TYR A 449 GLU A 450 ARG A 451 SITE 2 AC2 5 HOH A 784 SITE 1 AC3 1 ARG B 254 SITE 1 AC4 6 LEU B 190 GLU B 192 TRP B 234 LYS B 326 SITE 2 AC4 6 ILE B 330 HOH B 675 SITE 1 AC5 3 LYS B 297 ARG B 298 SER B 299 CRYST1 101.865 101.865 115.835 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008633 0.00000