PDB Short entry for 5IMK HEADER IMMUNE SYSTEM 06-MAR-16 5IMK TITLE NANOBODY TARGETING HUMAN VSIG4 IN SPACEGROUP C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN 4; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 19-232; COMPND 9 SYNONYM: PROTEIN Z39IG; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELIDAE; SOURCE 3 ORGANISM_TAXID: 9835; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: VSIG4, CRIG, Z39IG, UNQ317/PRO362; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NANOBODY, COMPLEMENT RECEPTOR, VSIG4 CRIG, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WEN REVDAT 2 05-JUL-17 5IMK 1 JRNL REVDAT 1 11-JAN-17 5IMK 0 JRNL AUTH Y.WEN,Z.OUYANG,S.SCHOONOOGHE,S.LUO,P.DE BAETSELIER,W.LU, JRNL AUTH 2 S.MUYLDERMANS,G.RAES,F.ZHENG JRNL TITL STRUCTURAL EVALUATION OF A NANOBODY TARGETING COMPLEMENT JRNL TITL 2 RECEPTOR VSIG4 AND ITS CROSS REACTIVITY JRNL REF IMMUNOBIOLOGY V. 222 807 2017 JRNL REFN ISSN 1878-3279 JRNL PMID 27889311 JRNL DOI 10.1016/J.IMBIO.2016.11.008 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 74570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0360 - 2.9575 1.00 5480 147 0.1594 0.1649 REMARK 3 2 2.9575 - 2.3475 1.00 5295 152 0.1751 0.1829 REMARK 3 3 2.3475 - 2.0508 1.00 5320 141 0.1660 0.1796 REMARK 3 4 2.0508 - 1.8633 1.00 5257 147 0.1567 0.1791 REMARK 3 5 1.8633 - 1.7297 1.00 5276 153 0.1703 0.1819 REMARK 3 6 1.7297 - 1.6277 1.00 5234 140 0.1695 0.2161 REMARK 3 7 1.6277 - 1.5462 1.00 5268 141 0.1679 0.1837 REMARK 3 8 1.5462 - 1.4789 1.00 5243 143 0.1745 0.1933 REMARK 3 9 1.4789 - 1.4220 1.00 5212 146 0.1828 0.1921 REMARK 3 10 1.4220 - 1.3729 1.00 5216 151 0.1896 0.2115 REMARK 3 11 1.3729 - 1.3300 1.00 5220 129 0.2001 0.2196 REMARK 3 12 1.3300 - 1.2920 1.00 5256 156 0.2093 0.2146 REMARK 3 13 1.2920 - 1.2579 0.87 4474 117 0.2370 0.2684 REMARK 3 14 1.2579 - 1.2272 0.92 4819 137 0.2791 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1957 REMARK 3 ANGLE : 1.291 2654 REMARK 3 CHIRALITY : 0.242 281 REMARK 3 PLANARITY : 0.007 346 REMARK 3 DIHEDRAL : 14.646 707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.227 REMARK 200 RESOLUTION RANGE LOW (A) : 42.011 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DEHYDRATE REMARK 280 PH5.6, 20% 2-PROPANOL, 20% PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.39550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.18450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.39550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.18450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 LEU A 119 REMARK 465 SER A 120 REMARK 465 VAL A 121 REMARK 465 SER A 122 REMARK 465 LYS A 123 REMARK 465 PRO A 124 REMARK 465 THR A 125 REMARK 465 VAL A 126 REMARK 465 THR A 127 REMARK 465 THR A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 TYR A 132 REMARK 465 GLY A 133 REMARK 465 PHE A 134 REMARK 465 THR A 135 REMARK 465 VAL A 136 REMARK 465 PRO A 137 REMARK 465 GLN A 138 REMARK 465 GLY A 139 REMARK 465 MET A 140 REMARK 465 ARG A 141 REMARK 465 ILE A 142 REMARK 465 SER A 143 REMARK 465 LEU A 144 REMARK 465 GLN A 145 REMARK 465 CYS A 146 REMARK 465 GLN A 147 REMARK 465 ALA A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 PRO A 153 REMARK 465 ILE A 154 REMARK 465 SER A 155 REMARK 465 TYR A 156 REMARK 465 ILE A 157 REMARK 465 TRP A 158 REMARK 465 TYR A 159 REMARK 465 LYS A 160 REMARK 465 GLN A 161 REMARK 465 GLN A 162 REMARK 465 THR A 163 REMARK 465 ASN A 164 REMARK 465 ASN A 165 REMARK 465 GLN A 166 REMARK 465 GLU A 167 REMARK 465 PRO A 168 REMARK 465 ILE A 169 REMARK 465 LYS A 170 REMARK 465 VAL A 171 REMARK 465 ALA A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 LEU A 177 REMARK 465 LEU A 178 REMARK 465 PHE A 179 REMARK 465 LYS A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 VAL A 183 REMARK 465 ILE A 184 REMARK 465 ALA A 185 REMARK 465 ASP A 186 REMARK 465 SER A 187 REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 TYR A 190 REMARK 465 PHE A 191 REMARK 465 CYS A 192 REMARK 465 THR A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLY A 196 REMARK 465 GLN A 197 REMARK 465 VAL A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 GLN A 202 REMARK 465 HIS A 203 REMARK 465 SER A 204 REMARK 465 ASP A 205 REMARK 465 ILE A 206 REMARK 465 VAL A 207 REMARK 465 LYS A 208 REMARK 465 PHE A 209 REMARK 465 VAL A 210 REMARK 465 VAL A 211 REMARK 465 LYS A 212 REMARK 465 ASP A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 1 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 71 O HOH A 303 1.49 REMARK 500 O HOH A 371 O HOH A 429 1.80 REMARK 500 O HOH B 256 O HOH B 367 1.81 REMARK 500 O HOH A 474 O HOH A 486 1.88 REMARK 500 O HOH B 203 O HOH A 451 1.93 REMARK 500 O HOH A 465 O HOH A 488 1.94 REMARK 500 O HOH A 302 O HOH A 451 1.94 REMARK 500 O HOH B 313 O HOH B 320 1.96 REMARK 500 O HOH A 334 O HOH A 459 1.99 REMARK 500 O HOH B 307 O HOH B 320 2.00 REMARK 500 O HOH B 235 O HOH B 385 2.02 REMARK 500 O HOH A 452 O HOH A 519 2.06 REMARK 500 O HOH A 379 O HOH A 507 2.08 REMARK 500 O HOH B 206 O HOH B 345 2.09 REMARK 500 O HOH B 208 O HOH B 336 2.12 REMARK 500 O HOH B 343 O HOH B 386 2.14 REMARK 500 N ARG A 1 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 338 O HOH B 403 4546 1.85 REMARK 500 O HOH A 521 O HOH A 528 4445 1.90 REMARK 500 O HOH B 293 O HOH A 398 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 91 167.50 177.04 REMARK 500 ASP B 101 -69.87 -107.37 REMARK 500 LYS A 15 -2.12 78.04 REMARK 500 ARG A 41 98.39 -165.57 REMARK 500 HIS A 71 -8.24 -143.33 REMARK 500 SER A 90 -178.21 -179.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 419 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 420 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A 528 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 529 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 7.75 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IML RELATED DB: PDB REMARK 900 RELATED ID: 5IMM RELATED DB: PDB REMARK 900 RELATED ID: 5IMO RELATED DB: PDB DBREF 5IMK B 0 130 PDB 5IMK 5IMK 0 130 DBREF 5IMK A 0 213 UNP Q9Y279 VSIG4_HUMAN 19 232 SEQADV 5IMK HIS A -6 UNP Q9Y279 EXPRESSION TAG SEQADV 5IMK HIS A -5 UNP Q9Y279 EXPRESSION TAG SEQADV 5IMK HIS A -4 UNP Q9Y279 EXPRESSION TAG SEQADV 5IMK HIS A -3 UNP Q9Y279 EXPRESSION TAG SEQADV 5IMK HIS A -2 UNP Q9Y279 EXPRESSION TAG SEQADV 5IMK HIS A -1 UNP Q9Y279 EXPRESSION TAG SEQRES 1 B 131 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 131 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 131 ARG THR PHE SER SER TYR GLY MET GLY TRP PHE ARG GLN SEQRES 4 B 131 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE ARG SEQRES 5 B 131 TRP ASN GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 131 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 131 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 131 ALA VAL TYR TYR CYS ALA ALA GLY ARG TRP ASP LYS TYR SEQRES 9 B 131 GLY SER SER PHE GLN ASP GLU TYR ASP TYR TRP GLY GLN SEQRES 10 B 131 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 11 B 131 HIS SEQRES 1 A 220 HIS HIS HIS HIS HIS HIS GLY ARG PRO ILE LEU GLU VAL SEQRES 2 A 220 PRO GLU SER VAL THR GLY PRO TRP LYS GLY ASP VAL ASN SEQRES 3 A 220 LEU PRO CYS THR TYR ASP PRO LEU GLN GLY TYR THR GLN SEQRES 4 A 220 VAL LEU VAL LYS TRP LEU VAL GLN ARG GLY SER ASP PRO SEQRES 5 A 220 VAL THR ILE PHE LEU ARG ASP SER SER GLY ASP HIS ILE SEQRES 6 A 220 GLN GLN ALA LYS TYR GLN GLY ARG LEU HIS VAL SER HIS SEQRES 7 A 220 LYS VAL PRO GLY ASP VAL SER LEU GLN LEU SER THR LEU SEQRES 8 A 220 GLU MET ASP ASP ARG SER HIS TYR THR CYS GLU VAL THR SEQRES 9 A 220 TRP GLN THR PRO ASP GLY ASN GLN VAL VAL ARG ASP LYS SEQRES 10 A 220 ILE THR GLU LEU ARG VAL GLN LYS LEU SER VAL SER LYS SEQRES 11 A 220 PRO THR VAL THR THR GLY SER GLY TYR GLY PHE THR VAL SEQRES 12 A 220 PRO GLN GLY MET ARG ILE SER LEU GLN CYS GLN ALA ARG SEQRES 13 A 220 GLY SER PRO PRO ILE SER TYR ILE TRP TYR LYS GLN GLN SEQRES 14 A 220 THR ASN ASN GLN GLU PRO ILE LYS VAL ALA THR LEU SER SEQRES 15 A 220 THR LEU LEU PHE LYS PRO ALA VAL ILE ALA ASP SER GLY SEQRES 16 A 220 SER TYR PHE CYS THR ALA LYS GLY GLN VAL GLY SER GLU SEQRES 17 A 220 GLN HIS SER ASP ILE VAL LYS PHE VAL VAL LYS ASP FORMUL 3 HOH *451(H2 O) HELIX 1 AA1 THR B 27 TYR B 31 5 5 HELIX 2 AA2 ASP B 61 LYS B 64 5 4 HELIX 3 AA3 LYS B 86 THR B 90 5 5 HELIX 4 AA4 PHE B 107 TYR B 111 5 5 HELIX 5 AA5 GLN A 60 GLN A 64 5 5 HELIX 6 AA6 GLU A 85 ARG A 89 5 5 SHEET 1 AA1 4 LEU B 3 SER B 6 0 SHEET 2 AA1 4 LEU B 17 ALA B 23 -1 O SER B 20 N SER B 6 SHEET 3 AA1 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 17 SHEET 4 AA1 4 PHE B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AA2 6 GLY B 9 GLN B 12 0 SHEET 2 AA2 6 THR B 118 SER B 123 1 O THR B 121 N VAL B 11 SHEET 3 AA2 6 ALA B 91 GLY B 98 -1 N TYR B 93 O THR B 118 SHEET 4 AA2 6 GLY B 32 GLN B 38 -1 N PHE B 36 O TYR B 94 SHEET 5 AA2 6 GLU B 45 ILE B 50 -1 O ALA B 48 N TRP B 35 SHEET 6 AA2 6 THR B 57 TYR B 59 -1 O TYR B 58 N ALA B 49 SHEET 1 AA3 4 GLY B 9 GLN B 12 0 SHEET 2 AA3 4 THR B 118 SER B 123 1 O THR B 121 N VAL B 11 SHEET 3 AA3 4 ALA B 91 GLY B 98 -1 N TYR B 93 O THR B 118 SHEET 4 AA3 4 TYR B 113 TRP B 114 -1 O TYR B 113 N ALA B 97 SHEET 1 AA4 6 SER A 9 PRO A 13 0 SHEET 2 AA4 6 GLN A 105 GLN A 117 1 O ARG A 115 N VAL A 10 SHEET 3 AA4 6 SER A 90 GLN A 99 -1 N TYR A 92 O THR A 112 SHEET 4 AA4 6 THR A 31 GLN A 40 -1 N THR A 31 O GLN A 99 SHEET 5 AA4 6 PRO A 45 ASP A 52 -1 O ILE A 48 N TRP A 37 SHEET 6 AA4 6 GLY A 55 ILE A 58 -1 O HIS A 57 N LEU A 50 SHEET 1 AA5 3 VAL A 18 LEU A 20 0 SHEET 2 AA5 3 LEU A 79 LEU A 81 -1 O LEU A 79 N LEU A 20 SHEET 3 AA5 3 LEU A 67 VAL A 69 -1 N HIS A 68 O GLN A 80 SSBOND 1 CYS B 21 CYS B 95 1555 1555 2.05 SSBOND 2 CYS A 22 CYS A 94 1555 1555 2.05 CISPEP 1 GLN B 0 VAL B 1 0 5.28 CISPEP 2 ARG A 41 GLY A 42 0 -11.22 CRYST1 126.791 30.369 84.297 90.00 126.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007887 0.000000 0.005918 0.00000 SCALE2 0.000000 0.032928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014831 0.00000