PDB Short entry for 5IML HEADER IMMUNE SYSTEM 06-MAR-16 5IML TITLE NANOBODY TARGETING HUMAN VSIG4 IN SPACEGROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-232; COMPND 5 SYNONYM: PROTEIN Z39IG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VSIG4, CRIG, Z39IG, UNQ317/PRO362; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CAMELIDAE; SOURCE 11 ORGANISM_TAXID: 9835; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NANOBODY, COMPLEMENT RECEPTOR, VSIG4 CRIG, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WEN REVDAT 2 05-JUL-17 5IML 1 JRNL REMARK REVDAT 1 11-JAN-17 5IML 0 JRNL AUTH Y.WEN,Z.OUYANG,S.SCHOONOOGHE,S.LUO,P.DE BAETSELIER,W.LU, JRNL AUTH 2 S.MUYLDERMANS,G.RAES,F.ZHENG JRNL TITL STRUCTURAL EVALUATION OF A NANOBODY TARGETING COMPLEMENT JRNL TITL 2 RECEPTOR VSIG4 AND ITS CROSS REACTIVITY JRNL REF IMMUNOBIOLOGY V. 222 807 2017 JRNL REFN ISSN 1878-3279 JRNL PMID 27889311 JRNL DOI 10.1016/J.IMBIO.2016.11.008 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7996 - 4.3456 1.00 1623 158 0.1618 0.1824 REMARK 3 2 4.3456 - 3.4495 1.00 1531 149 0.1462 0.1785 REMARK 3 3 3.4495 - 3.0136 1.00 1494 145 0.1733 0.2197 REMARK 3 4 3.0136 - 2.7381 1.00 1474 144 0.1858 0.2247 REMARK 3 5 2.7381 - 2.5418 1.00 1483 144 0.1885 0.2557 REMARK 3 6 2.5418 - 2.3920 1.00 1463 142 0.1929 0.2886 REMARK 3 7 2.3920 - 2.2722 1.00 1451 140 0.1906 0.2398 REMARK 3 8 2.2722 - 2.1733 1.00 1470 144 0.1998 0.2868 REMARK 3 9 2.1733 - 2.0896 1.00 1421 138 0.1921 0.2328 REMARK 3 10 2.0896 - 2.0175 1.00 1482 145 0.2110 0.2727 REMARK 3 11 2.0175 - 1.9544 1.00 1441 139 0.2064 0.2625 REMARK 3 12 1.9544 - 1.8985 1.00 1464 143 0.2517 0.2913 REMARK 3 13 1.8985 - 1.8486 1.00 1422 138 0.2587 0.3225 REMARK 3 14 1.8486 - 1.8035 0.93 1348 131 0.2946 0.3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1967 REMARK 3 ANGLE : 1.508 2666 REMARK 3 CHIRALITY : 0.060 281 REMARK 3 PLANARITY : 0.008 348 REMARK 3 DIHEDRAL : 16.541 713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.9195 -9.6314 21.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1447 REMARK 3 T33: 0.1951 T12: -0.0217 REMARK 3 T13: 0.0167 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0259 L22: 0.3480 REMARK 3 L33: 1.4285 L12: -0.2485 REMARK 3 L13: 0.6921 L23: -0.0878 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0508 S13: -0.0170 REMARK 3 S21: 0.0624 S22: -0.0046 S23: -0.0147 REMARK 3 S31: -0.0060 S32: -0.0064 S33: 0.0124 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 18.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (1) 1.2M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE, 0.1M BIS-TRIS PROPANE PH7.0 AND (2) 0.17M AMMONIUM REMARK 280 SULFATE, 15% GLYCEROL, 25.5% PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.63450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.32400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.02400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.32400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.63450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.02400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 119 REMARK 465 SER A 120 REMARK 465 VAL A 121 REMARK 465 SER A 122 REMARK 465 LYS A 123 REMARK 465 PRO A 124 REMARK 465 THR A 125 REMARK 465 VAL A 126 REMARK 465 THR A 127 REMARK 465 THR A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 TYR A 132 REMARK 465 GLY A 133 REMARK 465 PHE A 134 REMARK 465 THR A 135 REMARK 465 VAL A 136 REMARK 465 PRO A 137 REMARK 465 GLN A 138 REMARK 465 GLY A 139 REMARK 465 MET A 140 REMARK 465 ARG A 141 REMARK 465 ILE A 142 REMARK 465 SER A 143 REMARK 465 LEU A 144 REMARK 465 GLN A 145 REMARK 465 CYS A 146 REMARK 465 GLN A 147 REMARK 465 ALA A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 PRO A 153 REMARK 465 ILE A 154 REMARK 465 SER A 155 REMARK 465 TYR A 156 REMARK 465 ILE A 157 REMARK 465 TRP A 158 REMARK 465 TYR A 159 REMARK 465 LYS A 160 REMARK 465 GLN A 161 REMARK 465 GLN A 162 REMARK 465 THR A 163 REMARK 465 ASN A 164 REMARK 465 ASN A 165 REMARK 465 GLN A 166 REMARK 465 GLU A 167 REMARK 465 PRO A 168 REMARK 465 ILE A 169 REMARK 465 LYS A 170 REMARK 465 VAL A 171 REMARK 465 ALA A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 LEU A 177 REMARK 465 LEU A 178 REMARK 465 PHE A 179 REMARK 465 LYS A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 VAL A 183 REMARK 465 ILE A 184 REMARK 465 ALA A 185 REMARK 465 ASP A 186 REMARK 465 SER A 187 REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 TYR A 190 REMARK 465 PHE A 191 REMARK 465 CYS A 192 REMARK 465 THR A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLY A 196 REMARK 465 GLN A 197 REMARK 465 VAL A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 GLN A 202 REMARK 465 HIS A 203 REMARK 465 SER A 204 REMARK 465 ASP A 205 REMARK 465 ILE A 206 REMARK 465 VAL A 207 REMARK 465 LYS A 208 REMARK 465 PHE A 209 REMARK 465 VAL A 210 REMARK 465 VAL A 211 REMARK 465 LYS A 212 REMARK 465 ASP A 213 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 40 O HOH A 301 1.20 REMARK 500 HE ARG B 18 O HOH B 203 1.33 REMARK 500 HH21 ARG B 18 O HOH B 205 1.49 REMARK 500 OE1 GLN B 2 O HOH B 201 1.91 REMARK 500 O HOH B 203 O HOH B 205 1.93 REMARK 500 OE1 GLU A 113 NH1 ARG A 115 2.00 REMARK 500 NE2 GLN A 40 O HOH A 301 2.02 REMARK 500 OD1 ASP B 61 O HOH B 202 2.09 REMARK 500 NE ARG B 18 O HOH B 203 2.10 REMARK 500 OG SER A 43 O HOH A 302 2.13 REMARK 500 OG SER A 70 O HOH A 303 2.14 REMARK 500 OE1 GLN B 12 OG SER B 123 2.14 REMARK 500 N SER B 56 O HOH B 204 2.15 REMARK 500 NH2 ARG B 18 O HOH B 205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 MET B 82 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 83 72.01 51.24 REMARK 500 SER A 90 176.02 179.94 REMARK 500 ASN A 104 -163.95 -101.34 REMARK 500 VAL B 47 -57.68 -121.49 REMARK 500 ASP B 101 -67.84 -105.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IMK RELATED DB: PDB REMARK 900 RELATED ID: 5IMM RELATED DB: PDB REMARK 900 RELATED ID: 5IMO RELATED DB: PDB DBREF 5IML A 0 213 UNP Q9Y279 VSIG4_HUMAN 19 232 DBREF 5IML B 0 130 PDB 5IML 5IML 0 130 SEQADV 5IML HIS A -6 UNP Q9Y279 EXPRESSION TAG SEQADV 5IML HIS A -5 UNP Q9Y279 EXPRESSION TAG SEQADV 5IML HIS A -4 UNP Q9Y279 EXPRESSION TAG SEQADV 5IML HIS A -3 UNP Q9Y279 EXPRESSION TAG SEQADV 5IML HIS A -2 UNP Q9Y279 EXPRESSION TAG SEQADV 5IML HIS A -1 UNP Q9Y279 EXPRESSION TAG SEQRES 1 A 220 HIS HIS HIS HIS HIS HIS GLY ARG PRO ILE LEU GLU VAL SEQRES 2 A 220 PRO GLU SER VAL THR GLY PRO TRP LYS GLY ASP VAL ASN SEQRES 3 A 220 LEU PRO CYS THR TYR ASP PRO LEU GLN GLY TYR THR GLN SEQRES 4 A 220 VAL LEU VAL LYS TRP LEU VAL GLN ARG GLY SER ASP PRO SEQRES 5 A 220 VAL THR ILE PHE LEU ARG ASP SER SER GLY ASP HIS ILE SEQRES 6 A 220 GLN GLN ALA LYS TYR GLN GLY ARG LEU HIS VAL SER HIS SEQRES 7 A 220 LYS VAL PRO GLY ASP VAL SER LEU GLN LEU SER THR LEU SEQRES 8 A 220 GLU MET ASP ASP ARG SER HIS TYR THR CYS GLU VAL THR SEQRES 9 A 220 TRP GLN THR PRO ASP GLY ASN GLN VAL VAL ARG ASP LYS SEQRES 10 A 220 ILE THR GLU LEU ARG VAL GLN LYS LEU SER VAL SER LYS SEQRES 11 A 220 PRO THR VAL THR THR GLY SER GLY TYR GLY PHE THR VAL SEQRES 12 A 220 PRO GLN GLY MET ARG ILE SER LEU GLN CYS GLN ALA ARG SEQRES 13 A 220 GLY SER PRO PRO ILE SER TYR ILE TRP TYR LYS GLN GLN SEQRES 14 A 220 THR ASN ASN GLN GLU PRO ILE LYS VAL ALA THR LEU SER SEQRES 15 A 220 THR LEU LEU PHE LYS PRO ALA VAL ILE ALA ASP SER GLY SEQRES 16 A 220 SER TYR PHE CYS THR ALA LYS GLY GLN VAL GLY SER GLU SEQRES 17 A 220 GLN HIS SER ASP ILE VAL LYS PHE VAL VAL LYS ASP SEQRES 1 B 131 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 131 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 131 ARG THR PHE SER SER TYR GLY MET GLY TRP PHE ARG GLN SEQRES 4 B 131 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE ARG SEQRES 5 B 131 TRP ASN GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 131 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 131 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 131 ALA VAL TYR TYR CYS ALA ALA GLY ARG TRP ASP LYS TYR SEQRES 9 B 131 GLY SER SER PHE GLN ASP GLU TYR ASP TYR TRP GLY GLN SEQRES 10 B 131 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 11 B 131 HIS FORMUL 3 HOH *178(H2 O) HELIX 1 AA1 GLN A 60 GLN A 64 5 5 HELIX 2 AA2 GLU A 85 ARG A 89 5 5 HELIX 3 AA3 THR B 27 TYR B 31 5 5 HELIX 4 AA4 ASN B 73 LYS B 75 5 3 HELIX 5 AA5 LYS B 86 THR B 90 5 5 HELIX 6 AA6 PHE B 107 TYR B 111 5 5 SHEET 1 AA1 6 SER A 9 PRO A 13 0 SHEET 2 AA1 6 GLN A 105 GLN A 117 1 O ARG A 115 N VAL A 10 SHEET 3 AA1 6 SER A 90 GLN A 99 -1 N TRP A 98 O VAL A 106 SHEET 4 AA1 6 THR A 31 ARG A 41 -1 N LYS A 36 O GLU A 95 SHEET 5 AA1 6 ASP A 44 ASP A 52 -1 O ARG A 51 N VAL A 35 SHEET 6 AA1 6 GLY A 55 ILE A 58 -1 O HIS A 57 N LEU A 50 SHEET 1 AA2 3 VAL A 18 LEU A 20 0 SHEET 2 AA2 3 LEU A 79 LEU A 81 -1 O LEU A 79 N LEU A 20 SHEET 3 AA2 3 LEU A 67 HIS A 68 -1 N HIS A 68 O GLN A 80 SHEET 1 AA3 4 LEU B 3 SER B 6 0 SHEET 2 AA3 4 LEU B 17 ALA B 23 -1 O SER B 20 N SER B 6 SHEET 3 AA3 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 17 SHEET 4 AA3 4 PHE B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AA4 6 GLY B 9 GLN B 12 0 SHEET 2 AA4 6 THR B 118 SER B 123 1 O THR B 121 N VAL B 11 SHEET 3 AA4 6 ALA B 91 GLY B 98 -1 N TYR B 93 O THR B 118 SHEET 4 AA4 6 GLY B 32 GLN B 38 -1 N GLY B 34 O ALA B 96 SHEET 5 AA4 6 GLU B 45 ILE B 50 -1 O ALA B 48 N TRP B 35 SHEET 6 AA4 6 THR B 57 TYR B 59 -1 O TYR B 58 N ALA B 49 SHEET 1 AA5 4 GLY B 9 GLN B 12 0 SHEET 2 AA5 4 THR B 118 SER B 123 1 O THR B 121 N VAL B 11 SHEET 3 AA5 4 ALA B 91 GLY B 98 -1 N TYR B 93 O THR B 118 SHEET 4 AA5 4 TYR B 113 TRP B 114 -1 O TYR B 113 N ALA B 97 SSBOND 1 CYS A 22 CYS A 94 1555 1555 2.02 SSBOND 2 CYS B 21 CYS B 95 1555 1555 2.04 CRYST1 29.269 50.048 160.648 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006225 0.00000