PDB Short entry for 5IQQ HEADER RNA BINDING PROTEIN 11-MAR-16 5IQQ TITLE CRYSTAL STRUCTURE OF THE HUMAN RBM7 RRM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF, UNP RESIDUES 1-91; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28M-6XHIS-SUMOTAG KEYWDS PENTAMERIC ASSEMBLY, RRM FOLD, NON-CRYSTALLOGRAPHIC SYMMETRY, RNA KEYWDS 2 BINDING PROTEIN, NEXT COMPLEX, EXOSOME, RNA DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR N.SOFOS,M.B.L.WINKLER,D.E.BRODERSEN REVDAT 4 10-JAN-24 5IQQ 1 REMARK REVDAT 3 28-SEP-16 5IQQ 1 REVDAT 2 11-MAY-16 5IQQ 1 JRNL REVDAT 1 04-MAY-16 5IQQ 0 JRNL AUTH N.SOFOS,M.B.WINKLER,D.E.BRODERSEN JRNL TITL RRM DOMAIN OF HUMAN RBM7: PURIFICATION, CRYSTALLIZATION AND JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 397 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27139832 JRNL DOI 10.1107/S2053230X16006129 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2152 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0939 - 4.5782 0.99 2726 123 0.2062 0.2324 REMARK 3 2 4.5782 - 3.6342 0.99 2665 149 0.1745 0.1925 REMARK 3 3 3.6342 - 3.1749 0.99 2645 150 0.2171 0.2541 REMARK 3 4 3.1749 - 2.8847 0.99 2625 149 0.2445 0.2767 REMARK 3 5 2.8847 - 2.6779 0.98 2685 118 0.2681 0.2793 REMARK 3 6 2.6779 - 2.5200 0.98 2566 159 0.2848 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3342 REMARK 3 ANGLE : 0.691 4496 REMARK 3 CHIRALITY : 0.045 495 REMARK 3 PLANARITY : 0.004 574 REMARK 3 DIHEDRAL : 13.539 2033 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 58.3043 -5.2832 84.9885 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.2555 REMARK 3 T33: 0.2243 T12: 0.0399 REMARK 3 T13: 0.0259 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.0315 L22: 2.2684 REMARK 3 L33: 0.2230 L12: 0.1757 REMARK 3 L13: 0.2838 L23: -0.6936 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.1504 S13: -0.0341 REMARK 3 S21: -0.0596 S22: 0.0115 S23: 0.0093 REMARK 3 S31: 0.0945 S32: -0.0445 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 55.0073 22.1643 79.8037 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.2340 REMARK 3 T33: 0.2201 T12: 0.0268 REMARK 3 T13: -0.0009 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 1.3824 L22: 1.9457 REMARK 3 L33: 2.1110 L12: -0.1023 REMARK 3 L13: 0.8515 L23: -0.4352 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.0420 S13: -0.0535 REMARK 3 S21: -0.2649 S22: -0.0045 S23: 0.0642 REMARK 3 S31: -0.2926 S32: 0.1989 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 68.0416 37.9086 100.4835 REMARK 3 T TENSOR REMARK 3 T11: 0.4269 T22: 0.4387 REMARK 3 T33: 0.3897 T12: -0.1107 REMARK 3 T13: -0.0179 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.9217 L22: 2.0607 REMARK 3 L33: 2.0840 L12: -0.2335 REMARK 3 L13: 0.0966 L23: 0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.1009 S13: 0.0248 REMARK 3 S21: 0.1553 S22: -0.0488 S23: -0.1739 REMARK 3 S31: -0.4396 S32: 0.4026 S33: 0.0043 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 79.4842 18.7157 118.6276 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.2992 REMARK 3 T33: 0.2925 T12: -0.0667 REMARK 3 T13: 0.0170 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.7562 L22: 1.4810 REMARK 3 L33: 1.1519 L12: 0.4890 REMARK 3 L13: 0.5149 L23: 0.2750 REMARK 3 S TENSOR REMARK 3 S11: -0.0900 S12: -0.0290 S13: -0.0970 REMARK 3 S21: -0.0408 S22: 0.0230 S23: 0.0288 REMARK 3 S31: -0.0066 S32: 0.0931 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 73.6705 -7.5724 109.3266 REMARK 3 T TENSOR REMARK 3 T11: 0.2529 T22: 0.2837 REMARK 3 T33: 0.2264 T12: 0.0356 REMARK 3 T13: 0.0075 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8599 L22: 1.8688 REMARK 3 L33: 0.6387 L12: 0.2395 REMARK 3 L13: 0.5655 L23: -0.7374 REMARK 3 S TENSOR REMARK 3 S11: 0.1809 S12: 0.0434 S13: 0.0260 REMARK 3 S21: -0.1620 S22: -0.1846 S23: -0.0607 REMARK 3 S31: 0.0400 S32: -0.0258 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17201 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.540 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.52 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J0Q AND 1H2V REMARK 200 REMARK 200 REMARK: RHOMBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 150 MM KCL, 1.4 M REMARK 280 TRI-SODIUM CITRATE, EVAPORATION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.85350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.85350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 87 REMARK 465 SER A 88 REMARK 465 SER A 89 REMARK 465 HIS A 90 REMARK 465 ALA A 91 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 GLU B 7 REMARK 465 SER B 86 REMARK 465 GLY B 87 REMARK 465 SER B 88 REMARK 465 SER B 89 REMARK 465 HIS B 90 REMARK 465 ALA B 91 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 SER C 86 REMARK 465 GLY C 87 REMARK 465 SER C 88 REMARK 465 SER C 89 REMARK 465 HIS C 90 REMARK 465 ALA C 91 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ALA D 3 REMARK 465 ALA D 4 REMARK 465 SER D 86 REMARK 465 GLY D 87 REMARK 465 SER D 88 REMARK 465 SER D 89 REMARK 465 HIS D 90 REMARK 465 ALA D 91 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ALA E 5 REMARK 465 SER E 86 REMARK 465 GLY E 87 REMARK 465 SER E 88 REMARK 465 SER E 89 REMARK 465 HIS E 90 REMARK 465 ALA E 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP B 44 O LYS B 48 1.37 REMARK 500 H VAL C 36 O HOH C 103 1.49 REMARK 500 HZ1 LYS E 20 O HOH E 104 1.49 REMARK 500 OD1 ASP C 44 H LYS C 45 1.53 REMARK 500 HD21 ASN B 68 O LYS C 74 1.58 REMARK 500 HH21 ARG B 78 O HOH B 101 1.59 REMARK 500 O LYS E 50 O HOH E 101 1.87 REMARK 500 O HOH B 133 O HOH B 134 1.87 REMARK 500 O HOH D 136 O HOH D 151 1.89 REMARK 500 O HOH C 119 O HOH C 127 1.89 REMARK 500 O HOH D 103 O HOH D 143 1.95 REMARK 500 O HOH D 135 O HOH D 136 1.96 REMARK 500 O HOH E 149 O HOH E 151 1.97 REMARK 500 O HOH B 140 O HOH B 145 1.97 REMARK 500 O HOH B 137 O HOH B 145 1.99 REMARK 500 OD1 ASN A 16 O HOH A 101 2.00 REMARK 500 NH2 ARG B 78 O HOH B 101 2.02 REMARK 500 ND2 ASN B 68 O LYS C 74 2.04 REMARK 500 O HOH D 133 O HOH D 146 2.04 REMARK 500 O HOH A 113 O HOH A 135 2.05 REMARK 500 O HOH B 117 O HOH B 125 2.05 REMARK 500 O HOH D 133 O HOH D 148 2.05 REMARK 500 OE2 GLU E 60 O HOH E 102 2.05 REMARK 500 O HOH E 153 O HOH E 154 2.07 REMARK 500 O HOH E 107 O HOH E 142 2.08 REMARK 500 OE1 GLU A 28 O HOH A 102 2.09 REMARK 500 O HOH D 103 O HOH D 141 2.10 REMARK 500 O HOH E 109 O HOH E 124 2.14 REMARK 500 O HOH D 138 O HOH D 147 2.16 REMARK 500 O HOH B 130 O HOH B 138 2.16 REMARK 500 O HOH E 108 O HOH E 136 2.17 REMARK 500 OE1 GLU E 28 O HOH E 103 2.17 REMARK 500 O HOH B 114 O HOH B 149 2.17 REMARK 500 O HOH A 154 O HOH B 149 2.18 REMARK 500 O HOH A 104 O HOH A 112 2.18 REMARK 500 O HOH B 125 O HOH B 136 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 135 O HOH D 141 4749 1.91 REMARK 500 O HOH A 153 O HOH D 124 3444 2.03 REMARK 500 O HOH B 143 O HOH C 123 2759 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 35.90 -88.33 REMARK 500 ALA A 6 73.94 -151.82 REMARK 500 GLU A 7 81.16 40.45 REMARK 500 ALA A 8 -46.20 133.33 REMARK 500 ASP B 44 160.90 -45.67 REMARK 500 ALA C 4 47.54 -86.51 REMARK 500 LYS C 45 -62.85 15.81 REMARK 500 ASP C 46 -70.21 -76.12 REMARK 500 LYS C 48 -56.98 -151.02 REMARK 500 GLN D 51 48.29 -105.24 REMARK 500 ALA E 8 40.71 -88.84 REMARK 500 ASP E 9 21.93 -76.45 REMARK 500 ARG E 10 32.82 -87.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 154 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 155 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 156 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 157 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 158 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B 151 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH C 132 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH C 133 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH C 134 DISTANCE = 9.10 ANGSTROMS REMARK 525 HOH D 154 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH D 155 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH D 156 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH D 157 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH E 154 DISTANCE = 5.92 ANGSTROMS DBREF 5IQQ A 1 91 UNP Q9Y580 RBM7_HUMAN 1 91 DBREF 5IQQ B 1 91 UNP Q9Y580 RBM7_HUMAN 1 91 DBREF 5IQQ C 1 91 UNP Q9Y580 RBM7_HUMAN 1 91 DBREF 5IQQ D 1 91 UNP Q9Y580 RBM7_HUMAN 1 91 DBREF 5IQQ E 1 91 UNP Q9Y580 RBM7_HUMAN 1 91 SEQRES 1 A 91 MET GLY ALA ALA ALA ALA GLU ALA ASP ARG THR LEU PHE SEQRES 2 A 91 VAL GLY ASN LEU GLU THR LYS VAL THR GLU GLU LEU LEU SEQRES 3 A 91 PHE GLU LEU PHE HIS GLN ALA GLY PRO VAL ILE LYS VAL SEQRES 4 A 91 LYS ILE PRO LYS ASP LYS ASP GLY LYS PRO LYS GLN PHE SEQRES 5 A 91 ALA PHE VAL ASN PHE LYS HIS GLU VAL SER VAL PRO TYR SEQRES 6 A 91 ALA MET ASN LEU LEU ASN GLY ILE LYS LEU TYR GLY ARG SEQRES 7 A 91 PRO ILE LYS ILE GLN PHE ARG SER GLY SER SER HIS ALA SEQRES 1 B 91 MET GLY ALA ALA ALA ALA GLU ALA ASP ARG THR LEU PHE SEQRES 2 B 91 VAL GLY ASN LEU GLU THR LYS VAL THR GLU GLU LEU LEU SEQRES 3 B 91 PHE GLU LEU PHE HIS GLN ALA GLY PRO VAL ILE LYS VAL SEQRES 4 B 91 LYS ILE PRO LYS ASP LYS ASP GLY LYS PRO LYS GLN PHE SEQRES 5 B 91 ALA PHE VAL ASN PHE LYS HIS GLU VAL SER VAL PRO TYR SEQRES 6 B 91 ALA MET ASN LEU LEU ASN GLY ILE LYS LEU TYR GLY ARG SEQRES 7 B 91 PRO ILE LYS ILE GLN PHE ARG SER GLY SER SER HIS ALA SEQRES 1 C 91 MET GLY ALA ALA ALA ALA GLU ALA ASP ARG THR LEU PHE SEQRES 2 C 91 VAL GLY ASN LEU GLU THR LYS VAL THR GLU GLU LEU LEU SEQRES 3 C 91 PHE GLU LEU PHE HIS GLN ALA GLY PRO VAL ILE LYS VAL SEQRES 4 C 91 LYS ILE PRO LYS ASP LYS ASP GLY LYS PRO LYS GLN PHE SEQRES 5 C 91 ALA PHE VAL ASN PHE LYS HIS GLU VAL SER VAL PRO TYR SEQRES 6 C 91 ALA MET ASN LEU LEU ASN GLY ILE LYS LEU TYR GLY ARG SEQRES 7 C 91 PRO ILE LYS ILE GLN PHE ARG SER GLY SER SER HIS ALA SEQRES 1 D 91 MET GLY ALA ALA ALA ALA GLU ALA ASP ARG THR LEU PHE SEQRES 2 D 91 VAL GLY ASN LEU GLU THR LYS VAL THR GLU GLU LEU LEU SEQRES 3 D 91 PHE GLU LEU PHE HIS GLN ALA GLY PRO VAL ILE LYS VAL SEQRES 4 D 91 LYS ILE PRO LYS ASP LYS ASP GLY LYS PRO LYS GLN PHE SEQRES 5 D 91 ALA PHE VAL ASN PHE LYS HIS GLU VAL SER VAL PRO TYR SEQRES 6 D 91 ALA MET ASN LEU LEU ASN GLY ILE LYS LEU TYR GLY ARG SEQRES 7 D 91 PRO ILE LYS ILE GLN PHE ARG SER GLY SER SER HIS ALA SEQRES 1 E 91 MET GLY ALA ALA ALA ALA GLU ALA ASP ARG THR LEU PHE SEQRES 2 E 91 VAL GLY ASN LEU GLU THR LYS VAL THR GLU GLU LEU LEU SEQRES 3 E 91 PHE GLU LEU PHE HIS GLN ALA GLY PRO VAL ILE LYS VAL SEQRES 4 E 91 LYS ILE PRO LYS ASP LYS ASP GLY LYS PRO LYS GLN PHE SEQRES 5 E 91 ALA PHE VAL ASN PHE LYS HIS GLU VAL SER VAL PRO TYR SEQRES 6 E 91 ALA MET ASN LEU LEU ASN GLY ILE LYS LEU TYR GLY ARG SEQRES 7 E 91 PRO ILE LYS ILE GLN PHE ARG SER GLY SER SER HIS ALA FORMUL 6 HOH *254(H2 O) HELIX 1 AA1 THR A 22 HIS A 31 1 10 HELIX 2 AA2 GLN A 32 GLY A 34 5 3 HELIX 3 AA3 VAL A 61 ASN A 71 1 11 HELIX 4 AA4 THR B 22 HIS B 31 1 10 HELIX 5 AA5 GLN B 32 GLY B 34 5 3 HELIX 6 AA6 VAL B 61 ASN B 71 1 11 HELIX 7 AA7 GLU C 7 ASP C 9 5 3 HELIX 8 AA8 THR C 22 GLN C 32 1 11 HELIX 9 AA9 VAL C 61 ASN C 71 1 11 HELIX 10 AB1 THR D 22 HIS D 31 1 10 HELIX 11 AB2 GLN D 32 GLY D 34 5 3 HELIX 12 AB3 VAL D 61 ASN D 71 1 11 HELIX 13 AB4 THR E 22 HIS E 31 1 10 HELIX 14 AB5 GLN E 32 GLY E 34 5 3 HELIX 15 AB6 VAL E 61 ASN E 71 1 11 SHEET 1 AA1 4 VAL A 36 LYS A 40 0 SHEET 2 AA1 4 PHE A 52 PHE A 57 -1 O ASN A 56 N LYS A 38 SHEET 3 AA1 4 THR A 11 GLY A 15 -1 N LEU A 12 O VAL A 55 SHEET 4 AA1 4 LYS A 81 GLN A 83 -1 O GLN A 83 N PHE A 13 SHEET 1 AA2 2 LYS A 74 LEU A 75 0 SHEET 2 AA2 2 ARG A 78 PRO A 79 -1 O ARG A 78 N LEU A 75 SHEET 1 AA3 4 VAL B 36 LYS B 40 0 SHEET 2 AA3 4 ALA B 53 PHE B 57 -1 O PHE B 54 N LYS B 40 SHEET 3 AA3 4 THR B 11 GLY B 15 -1 N VAL B 14 O ALA B 53 SHEET 4 AA3 4 LYS B 81 GLN B 83 -1 O LYS B 81 N GLY B 15 SHEET 1 AA4 2 LYS B 74 LEU B 75 0 SHEET 2 AA4 2 ARG B 78 PRO B 79 -1 O ARG B 78 N LEU B 75 SHEET 1 AA5 4 VAL C 36 LYS C 40 0 SHEET 2 AA5 4 ALA C 53 PHE C 57 -1 O ASN C 56 N LYS C 38 SHEET 3 AA5 4 THR C 11 GLY C 15 -1 N VAL C 14 O ALA C 53 SHEET 4 AA5 4 LYS C 81 GLN C 83 -1 O LYS C 81 N GLY C 15 SHEET 1 AA6 2 LYS C 74 LEU C 75 0 SHEET 2 AA6 2 ARG C 78 PRO C 79 -1 O ARG C 78 N LEU C 75 SHEET 1 AA7 4 VAL D 36 LYS D 40 0 SHEET 2 AA7 4 PHE D 52 PHE D 57 -1 O ASN D 56 N LYS D 38 SHEET 3 AA7 4 THR D 11 GLY D 15 -1 N VAL D 14 O ALA D 53 SHEET 4 AA7 4 LYS D 81 PHE D 84 -1 O GLN D 83 N PHE D 13 SHEET 1 AA8 2 LYS D 74 LEU D 75 0 SHEET 2 AA8 2 ARG D 78 PRO D 79 -1 O ARG D 78 N LEU D 75 SHEET 1 AA9 4 VAL E 36 LYS E 40 0 SHEET 2 AA9 4 ALA E 53 PHE E 57 -1 O ASN E 56 N LYS E 38 SHEET 3 AA9 4 THR E 11 GLY E 15 -1 N LEU E 12 O VAL E 55 SHEET 4 AA9 4 LYS E 81 GLN E 83 -1 O GLN E 83 N PHE E 13 SHEET 1 AB1 2 LYS E 74 LEU E 75 0 SHEET 2 AB1 2 ARG E 78 PRO E 79 -1 O ARG E 78 N LEU E 75 CISPEP 1 ALA A 6 GLU A 7 0 0.33 CISPEP 2 ALA C 3 ALA C 4 0 0.96 CISPEP 3 ASP C 46 GLY C 47 0 6.01 CISPEP 4 GLY C 47 LYS C 48 0 -6.90 CISPEP 5 LYS C 48 PRO C 49 0 -12.78 CRYST1 115.707 83.210 60.826 90.00 119.63 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008643 0.000000 0.004916 0.00000 SCALE2 0.000000 0.012018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018914 0.00000