PDB Short entry for 5ITX HEADER DNA BINDING PROTEIN/DNA 17-MAR-16 5ITX TITLE CRYSTAL STRUCTURE OF HUMAN NEIL1(P2G R242K) BOUND TO DUPLEX DNA TITLE 2 CONTAINING THYMINE GLYCOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE 8-LIKE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 5 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 6 NEI-LIKE PROTEIN 1; COMPND 7 EC: 3.2.2.-,4.2.99.18; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (26-MER); COMPND 11 CHAIN: D, C, F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ENDONUCLEASE 8-LIKE 1; COMPND 15 CHAIN: E; COMPND 16 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 17 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 18 NEI-LIKE PROTEIN 1; COMPND 19 EC: 3.2.2.-,4.2.99.18; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEIL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: NEIL1; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA GLYCOSYLASE NEIL1 FPG NEI BASE EXCISION REPAIR, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHU,L.LU,J.ZHANG,Z.YUE,J.SONG,S.ZONG,M.LIU,O.STOVICEK,Y.GAO,C.YI REVDAT 3 08-NOV-23 5ITX 1 JRNL REMARK REVDAT 2 03-AUG-16 5ITX 1 JRNL REVDAT 1 06-JUL-16 5ITX 0 JRNL AUTH C.ZHU,L.LU,J.ZHANG,Z.YUE,J.SONG,S.ZONG,M.LIU,O.STOVICEK, JRNL AUTH 2 Y.Q.GAO,C.YI JRNL TITL TAUTOMERIZATION-DEPENDENT RECOGNITION AND EXCISION OF JRNL TITL 2 OXIDATION DAMAGE IN BASE-EXCISION DNA REPAIR JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 7792 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27354518 JRNL DOI 10.1073/PNAS.1604591113 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6242 REMARK 3 NUCLEIC ACID ATOMS : 1581 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ITX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 92.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLIC ACID (PH 7.0), 0.1 M REMARK 280 NACL, 0.05 M MGCL2 AND 24% (W/V) PEG 8000, PH 6.5, EVAPORATION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.99550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.48400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.48400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.99550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 204 REMARK 465 ARG A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 LEU A 210 REMARK 465 THR A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 GLN A 214 REMARK 465 LYS A 215 REMARK 465 ILE A 216 REMARK 465 ARG A 217 REMARK 465 THR A 218 REMARK 465 LYS A 219 REMARK 465 LEU A 220 REMARK 465 GLN A 221 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 GLU A 247 REMARK 465 SER A 248 REMARK 465 GLY A 249 REMARK 465 GLU A 250 REMARK 465 GLU A 251 REMARK 465 LYS A 291 REMARK 465 GLY A 292 REMARK 465 ARG A 293 REMARK 465 LYS A 294 REMARK 465 SER A 295 REMARK 465 ARG A 296 REMARK 465 LYS A 297 REMARK 465 LYS A 298 REMARK 465 LYS A 299 REMARK 465 SER A 300 REMARK 465 LYS A 301 REMARK 465 ALA A 302 REMARK 465 THR A 303 REMARK 465 GLN A 304 REMARK 465 LEU A 305 REMARK 465 SER A 306 REMARK 465 PRO A 307 REMARK 465 GLU A 308 REMARK 465 ASP A 309 REMARK 465 ARG A 310 REMARK 465 VAL A 311 REMARK 465 GLU A 312 REMARK 465 ASP A 313 REMARK 465 ALA A 314 REMARK 465 LEU A 315 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 SER A 318 REMARK 465 LYS A 319 REMARK 465 ALA A 320 REMARK 465 PRO A 321 REMARK 465 SER A 322 REMARK 465 ARG A 323 REMARK 465 THR A 324 REMARK 465 ARG A 325 REMARK 465 ARG A 326 REMARK 465 ALA A 327 REMARK 465 LYS A 328 REMARK 465 ARG A 329 REMARK 465 ASP A 330 REMARK 465 LEU A 331 REMARK 465 PRO A 332 REMARK 465 LYS A 333 REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 ALA A 336 REMARK 465 THR A 337 REMARK 465 GLN A 338 REMARK 465 ARG A 339 REMARK 465 PRO A 340 REMARK 465 GLU A 341 REMARK 465 GLY A 342 REMARK 465 THR A 343 REMARK 465 SER A 344 REMARK 465 LEU A 345 REMARK 465 GLN A 346 REMARK 465 GLN A 347 REMARK 465 ASP A 348 REMARK 465 PRO A 349 REMARK 465 GLU A 350 REMARK 465 ALA A 351 REMARK 465 PRO A 352 REMARK 465 THR A 353 REMARK 465 VAL A 354 REMARK 465 PRO A 355 REMARK 465 LYS A 356 REMARK 465 LYS A 357 REMARK 465 GLY A 358 REMARK 465 ARG A 359 REMARK 465 ARG A 360 REMARK 465 LYS A 361 REMARK 465 GLY A 362 REMARK 465 ARG A 363 REMARK 465 GLN A 364 REMARK 465 ALA A 365 REMARK 465 ALA A 366 REMARK 465 SER A 367 REMARK 465 GLY A 368 REMARK 465 HIS A 369 REMARK 465 CYS A 370 REMARK 465 ARG A 371 REMARK 465 PRO A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 VAL A 375 REMARK 465 LYS A 376 REMARK 465 ALA A 377 REMARK 465 ASP A 378 REMARK 465 ILE A 379 REMARK 465 PRO A 380 REMARK 465 SER A 381 REMARK 465 LEU A 382 REMARK 465 GLU A 383 REMARK 465 PRO A 384 REMARK 465 GLU A 385 REMARK 465 GLY A 386 REMARK 465 THR A 387 REMARK 465 SER A 388 REMARK 465 ALA A 389 REMARK 465 SER A 390 REMARK 465 MET B 1 REMARK 465 GLN B 202 REMARK 465 GLN B 203 REMARK 465 HIS B 204 REMARK 465 ARG B 205 REMARK 465 PRO B 206 REMARK 465 SER B 207 REMARK 465 PRO B 208 REMARK 465 GLU B 209 REMARK 465 LEU B 210 REMARK 465 THR B 211 REMARK 465 LEU B 212 REMARK 465 SER B 213 REMARK 465 GLN B 214 REMARK 465 LYS B 215 REMARK 465 ILE B 216 REMARK 465 ARG B 217 REMARK 465 THR B 218 REMARK 465 LYS B 219 REMARK 465 LEU B 220 REMARK 465 GLN B 221 REMARK 465 GLY B 245 REMARK 465 SER B 246 REMARK 465 GLU B 247 REMARK 465 SER B 248 REMARK 465 GLY B 249 REMARK 465 GLU B 250 REMARK 465 LYS B 291 REMARK 465 GLY B 292 REMARK 465 ARG B 293 REMARK 465 LYS B 294 REMARK 465 SER B 295 REMARK 465 ARG B 296 REMARK 465 LYS B 297 REMARK 465 LYS B 298 REMARK 465 LYS B 299 REMARK 465 SER B 300 REMARK 465 LYS B 301 REMARK 465 ALA B 302 REMARK 465 THR B 303 REMARK 465 GLN B 304 REMARK 465 LEU B 305 REMARK 465 SER B 306 REMARK 465 PRO B 307 REMARK 465 GLU B 308 REMARK 465 ASP B 309 REMARK 465 ARG B 310 REMARK 465 VAL B 311 REMARK 465 GLU B 312 REMARK 465 ASP B 313 REMARK 465 ALA B 314 REMARK 465 LEU B 315 REMARK 465 PRO B 316 REMARK 465 PRO B 317 REMARK 465 SER B 318 REMARK 465 LYS B 319 REMARK 465 ALA B 320 REMARK 465 PRO B 321 REMARK 465 SER B 322 REMARK 465 ARG B 323 REMARK 465 THR B 324 REMARK 465 ARG B 325 REMARK 465 ARG B 326 REMARK 465 ALA B 327 REMARK 465 LYS B 328 REMARK 465 ARG B 329 REMARK 465 ASP B 330 REMARK 465 LEU B 331 REMARK 465 PRO B 332 REMARK 465 LYS B 333 REMARK 465 ARG B 334 REMARK 465 THR B 335 REMARK 465 ALA B 336 REMARK 465 THR B 337 REMARK 465 GLN B 338 REMARK 465 ARG B 339 REMARK 465 PRO B 340 REMARK 465 GLU B 341 REMARK 465 GLY B 342 REMARK 465 THR B 343 REMARK 465 SER B 344 REMARK 465 LEU B 345 REMARK 465 GLN B 346 REMARK 465 GLN B 347 REMARK 465 ASP B 348 REMARK 465 PRO B 349 REMARK 465 GLU B 350 REMARK 465 ALA B 351 REMARK 465 PRO B 352 REMARK 465 THR B 353 REMARK 465 VAL B 354 REMARK 465 PRO B 355 REMARK 465 LYS B 356 REMARK 465 LYS B 357 REMARK 465 GLY B 358 REMARK 465 ARG B 359 REMARK 465 ARG B 360 REMARK 465 LYS B 361 REMARK 465 GLY B 362 REMARK 465 ARG B 363 REMARK 465 GLN B 364 REMARK 465 ALA B 365 REMARK 465 ALA B 366 REMARK 465 SER B 367 REMARK 465 GLY B 368 REMARK 465 HIS B 369 REMARK 465 CYS B 370 REMARK 465 ARG B 371 REMARK 465 PRO B 372 REMARK 465 ARG B 373 REMARK 465 LYS B 374 REMARK 465 VAL B 375 REMARK 465 LYS B 376 REMARK 465 ALA B 377 REMARK 465 ASP B 378 REMARK 465 ILE B 379 REMARK 465 PRO B 380 REMARK 465 SER B 381 REMARK 465 LEU B 382 REMARK 465 GLU B 383 REMARK 465 PRO B 384 REMARK 465 GLU B 385 REMARK 465 GLY B 386 REMARK 465 THR B 387 REMARK 465 SER B 388 REMARK 465 ALA B 389 REMARK 465 SER B 390 REMARK 465 MET E 1 REMARK 465 LEU E 201 REMARK 465 GLN E 202 REMARK 465 GLN E 203 REMARK 465 HIS E 204 REMARK 465 ARG E 205 REMARK 465 PRO E 206 REMARK 465 SER E 207 REMARK 465 PRO E 208 REMARK 465 GLU E 209 REMARK 465 LEU E 210 REMARK 465 THR E 211 REMARK 465 LEU E 212 REMARK 465 SER E 213 REMARK 465 GLN E 214 REMARK 465 LYS E 215 REMARK 465 ILE E 216 REMARK 465 ARG E 217 REMARK 465 THR E 218 REMARK 465 LYS E 219 REMARK 465 LEU E 220 REMARK 465 GLN E 221 REMARK 465 GLY E 240 REMARK 465 GLY E 245 REMARK 465 SER E 246 REMARK 465 GLU E 247 REMARK 465 SER E 248 REMARK 465 GLY E 249 REMARK 465 GLU E 250 REMARK 465 GLU E 251 REMARK 465 LYS E 291 REMARK 465 GLY E 292 REMARK 465 ARG E 293 REMARK 465 LYS E 294 REMARK 465 SER E 295 REMARK 465 ARG E 296 REMARK 465 LYS E 297 REMARK 465 LYS E 298 REMARK 465 LYS E 299 REMARK 465 SER E 300 REMARK 465 LYS E 301 REMARK 465 ALA E 302 REMARK 465 THR E 303 REMARK 465 GLN E 304 REMARK 465 LEU E 305 REMARK 465 SER E 306 REMARK 465 PRO E 307 REMARK 465 GLU E 308 REMARK 465 ASP E 309 REMARK 465 ARG E 310 REMARK 465 VAL E 311 REMARK 465 GLU E 312 REMARK 465 ASP E 313 REMARK 465 ALA E 314 REMARK 465 LEU E 315 REMARK 465 PRO E 316 REMARK 465 PRO E 317 REMARK 465 SER E 318 REMARK 465 LYS E 319 REMARK 465 ALA E 320 REMARK 465 PRO E 321 REMARK 465 SER E 322 REMARK 465 ARG E 323 REMARK 465 THR E 324 REMARK 465 ARG E 325 REMARK 465 ARG E 326 REMARK 465 ALA E 327 REMARK 465 LYS E 328 REMARK 465 ARG E 329 REMARK 465 ASP E 330 REMARK 465 LEU E 331 REMARK 465 PRO E 332 REMARK 465 LYS E 333 REMARK 465 ARG E 334 REMARK 465 THR E 335 REMARK 465 ALA E 336 REMARK 465 THR E 337 REMARK 465 GLN E 338 REMARK 465 ARG E 339 REMARK 465 PRO E 340 REMARK 465 GLU E 341 REMARK 465 GLY E 342 REMARK 465 THR E 343 REMARK 465 SER E 344 REMARK 465 LEU E 345 REMARK 465 GLN E 346 REMARK 465 GLN E 347 REMARK 465 ASP E 348 REMARK 465 PRO E 349 REMARK 465 GLU E 350 REMARK 465 ALA E 351 REMARK 465 PRO E 352 REMARK 465 THR E 353 REMARK 465 VAL E 354 REMARK 465 PRO E 355 REMARK 465 LYS E 356 REMARK 465 LYS E 357 REMARK 465 GLY E 358 REMARK 465 ARG E 359 REMARK 465 ARG E 360 REMARK 465 LYS E 361 REMARK 465 GLY E 362 REMARK 465 ARG E 363 REMARK 465 GLN E 364 REMARK 465 ALA E 365 REMARK 465 ALA E 366 REMARK 465 SER E 367 REMARK 465 GLY E 368 REMARK 465 HIS E 369 REMARK 465 CYS E 370 REMARK 465 ARG E 371 REMARK 465 PRO E 372 REMARK 465 ARG E 373 REMARK 465 LYS E 374 REMARK 465 VAL E 375 REMARK 465 LYS E 376 REMARK 465 ALA E 377 REMARK 465 ASP E 378 REMARK 465 ILE E 379 REMARK 465 PRO E 380 REMARK 465 SER E 381 REMARK 465 LEU E 382 REMARK 465 GLU E 383 REMARK 465 PRO E 384 REMARK 465 GLU E 385 REMARK 465 GLY E 386 REMARK 465 THR E 387 REMARK 465 SER E 388 REMARK 465 ALA E 389 REMARK 465 SER E 390 REMARK 465 ALA E 391 REMARK 465 ALA E 392 REMARK 465 LEU E 393 REMARK 465 GLY E 394 REMARK 465 HIS E 395 REMARK 465 HIS E 396 REMARK 465 HIS E 397 REMARK 465 HIS E 398 REMARK 465 HIS E 399 REMARK 465 HIS E 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 2 CB CG CD REMARK 470 DT D 306 P OP1 OP2 REMARK 470 PRO B 2 CB CG CD REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 PHE B 253 CD1 CD2 CE1 CE2 CZ REMARK 470 CYS B 262 SG REMARK 470 DT C 306 P OP1 OP2 REMARK 470 GLN E 142 CD OE1 NE2 REMARK 470 PHE E 253 CD1 CD2 CE1 CE2 CZ REMARK 470 DT F 306 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 3 C GLY B 175 1.63 REMARK 500 OE1 GLU E 3 C GLY E 175 1.67 REMARK 500 OE1 GLU B 3 CA GLY B 175 1.73 REMARK 500 OE1 GLU E 3 N GLY E 175 1.73 REMARK 500 OH TYR B 263 OP1 CTG C 297 1.75 REMARK 500 OH TYR E 263 OP1 CTG F 297 1.90 REMARK 500 O ALA E 194 CD2 LEU E 198 2.07 REMARK 500 OE1 GLU B 3 N ASN B 176 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 457 O HOH A 496 3554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 298 O3' DT C 299 P 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PRO A 68 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO A 68 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 PRO A 106 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO A 131 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D 298 O5' - P - OP1 ANGL. DEV. = -10.8 DEGREES REMARK 500 DG D 298 O5' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 DG D 313 O5' - P - OP1 ANGL. DEV. = -7.2 DEGREES REMARK 500 DG D 313 O5' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 PRO B 68 C - N - CD ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG B 78 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO B 105 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 DG C 298 O5' - P - OP1 ANGL. DEV. = -22.6 DEGREES REMARK 500 DG C 298 O5' - P - OP2 ANGL. DEV. = 10.7 DEGREES REMARK 500 PRO E 68 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 68 141.66 28.49 REMARK 500 PRO A 106 -62.25 -126.06 REMARK 500 ALA A 200 -20.31 99.26 REMARK 500 CYS A 262 -55.55 -136.91 REMARK 500 PRO B 68 -173.28 -64.08 REMARK 500 PRO B 72 170.89 -53.79 REMARK 500 SER B 82 38.40 -140.48 REMARK 500 PRO B 105 -63.69 -16.74 REMARK 500 GLN B 168 7.33 -66.66 REMARK 500 LYS B 187 24.50 45.86 REMARK 500 ALA B 200 55.42 132.46 REMARK 500 LYS B 242 49.46 83.92 REMARK 500 CYS B 262 -18.85 -142.42 REMARK 500 LEU B 288 37.67 -78.53 REMARK 500 GLU E 16 4.83 -66.66 REMARK 500 ARG E 34 52.77 -91.01 REMARK 500 PRO E 36 139.46 -27.68 REMARK 500 GLU E 41 67.42 -151.52 REMARK 500 ALA E 44 89.00 -176.15 REMARK 500 SER E 50 -151.80 -113.49 REMARK 500 ARG E 52 87.98 172.85 REMARK 500 LEU E 60 68.17 -114.00 REMARK 500 PRO E 68 171.02 23.87 REMARK 500 SER E 84 -167.63 -168.02 REMARK 500 HIS E 96 8.93 82.07 REMARK 500 ALA E 97 98.93 -62.67 REMARK 500 PRO E 106 70.33 -59.31 REMARK 500 GLN E 139 -67.55 -124.75 REMARK 500 TYR E 141 -70.15 -66.66 REMARK 500 ASP E 154 172.05 -40.31 REMARK 500 ASP E 167 94.35 -58.03 REMARK 500 GLN E 168 0.16 -64.35 REMARK 500 LYS E 187 46.36 36.67 REMARK 500 PHE E 191 41.06 -106.01 REMARK 500 GLU E 199 58.48 -61.99 REMARK 500 ARG E 242 70.60 61.44 REMARK 500 CYS E 262 -82.77 -154.43 REMARK 500 TYR E 263 123.12 -39.27 REMARK 500 PRO E 266 -71.11 -34.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 67 PRO A 68 -92.99 REMARK 500 PRO A 105 PRO A 106 104.86 REMARK 500 ALA A 200 LEU A 201 144.12 REMARK 500 GLY A 243 TYR A 244 -147.74 REMARK 500 GLN E 67 PRO E 68 -145.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 509 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A 513 DISTANCE = 8.47 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ITY RELATED DB: PDB REMARK 900 RELATED ID: 5ITQ RELATED DB: PDB REMARK 900 RELATED ID: 5ITT RELATED DB: PDB REMARK 900 RELATED ID: 5ITR RELATED DB: PDB REMARK 900 RELATED ID: 5ITU RELATED DB: PDB DBREF 5ITX A 1 390 UNP Q96FI4 NEIL1_HUMAN 1 390 DBREF 5ITX D 291 318 PDB 5ITX 5ITX 291 318 DBREF 5ITX B 1 390 UNP Q96FI4 NEIL1_HUMAN 1 390 DBREF 5ITX C 291 318 PDB 5ITX 5ITX 291 318 DBREF 5ITX E 1 390 UNP Q96FI4 NEIL1_HUMAN 1 390 DBREF 5ITX F 291 318 PDB 5ITX 5ITX 291 318 SEQADV 5ITX GLY E 2 UNP Q96FI4 PRO 2 ENGINEERED MUTATION SEQADV 5ITX ARG E 242 UNP Q96FI4 LYS 242 ENGINEERED MUTATION SEQADV 5ITX ALA E 391 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX ALA E 392 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX LEU E 393 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX GLY E 394 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 395 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 396 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 397 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 398 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 399 UNP Q96FI4 EXPRESSION TAG SEQADV 5ITX HIS E 400 UNP Q96FI4 EXPRESSION TAG SEQRES 1 A 390 MET PRO GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 A 390 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 A 390 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 A 390 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 A 390 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 A 390 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 A 390 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 A 390 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 A 390 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 A 390 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 A 390 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 A 390 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 A 390 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 A 390 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 A 390 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 A 390 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 A 390 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 A 390 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 A 390 GLU VAL VAL GLN LEU GLY GLY LYS GLY TYR GLY SER GLU SEQRES 20 A 390 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 A 390 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 A 390 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 A 390 PRO LEU ALA PRO LYS GLY ARG LYS SER ARG LYS LYS LYS SEQRES 24 A 390 SER LYS ALA THR GLN LEU SER PRO GLU ASP ARG VAL GLU SEQRES 25 A 390 ASP ALA LEU PRO PRO SER LYS ALA PRO SER ARG THR ARG SEQRES 26 A 390 ARG ALA LYS ARG ASP LEU PRO LYS ARG THR ALA THR GLN SEQRES 27 A 390 ARG PRO GLU GLY THR SER LEU GLN GLN ASP PRO GLU ALA SEQRES 28 A 390 PRO THR VAL PRO LYS LYS GLY ARG ARG LYS GLY ARG GLN SEQRES 29 A 390 ALA ALA SER GLY HIS CYS ARG PRO ARG LYS VAL LYS ALA SEQRES 30 A 390 ASP ILE PRO SER LEU GLU PRO GLU GLY THR SER ALA SER SEQRES 1 D 26 DC DG DT DC DC DA CTG DG DT DC DT DA DC SEQRES 2 D 26 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 B 390 MET PRO GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 B 390 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 B 390 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 B 390 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 B 390 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 B 390 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 B 390 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 B 390 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 B 390 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 B 390 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 B 390 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 B 390 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 B 390 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 B 390 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 B 390 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 B 390 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 B 390 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 B 390 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 B 390 GLU VAL VAL GLN LEU GLY GLY LYS GLY TYR GLY SER GLU SEQRES 20 B 390 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 B 390 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 B 390 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 B 390 PRO LEU ALA PRO LYS GLY ARG LYS SER ARG LYS LYS LYS SEQRES 24 B 390 SER LYS ALA THR GLN LEU SER PRO GLU ASP ARG VAL GLU SEQRES 25 B 390 ASP ALA LEU PRO PRO SER LYS ALA PRO SER ARG THR ARG SEQRES 26 B 390 ARG ALA LYS ARG ASP LEU PRO LYS ARG THR ALA THR GLN SEQRES 27 B 390 ARG PRO GLU GLY THR SER LEU GLN GLN ASP PRO GLU ALA SEQRES 28 B 390 PRO THR VAL PRO LYS LYS GLY ARG ARG LYS GLY ARG GLN SEQRES 29 B 390 ALA ALA SER GLY HIS CYS ARG PRO ARG LYS VAL LYS ALA SEQRES 30 B 390 ASP ILE PRO SER LEU GLU PRO GLU GLY THR SER ALA SER SEQRES 1 C 26 DC DG DT DC DC DA CTG DG DT DC DT DA DC SEQRES 2 C 26 DT DA DG DA DC DC DT DG DG DA DC DG DG SEQRES 1 E 400 MET GLY GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE SEQRES 2 E 400 VAL ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS SEQRES 3 E 400 VAL GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO SEQRES 4 E 400 PHE GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG SEQRES 5 E 400 GLY LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY SEQRES 6 E 400 ALA GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG SEQRES 7 E 400 PHE GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU SEQRES 8 E 400 GLU LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA SEQRES 9 E 400 PRO PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE SEQRES 10 E 400 ARG ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN SEQRES 11 E 400 PRO GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN SEQRES 12 E 400 PHE ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA SEQRES 13 E 400 PHE ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG SEQRES 14 E 400 PHE PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE SEQRES 15 E 400 LEU TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SEQRES 16 E 400 SER VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO SEQRES 17 E 400 GLU LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN SEQRES 18 E 400 ASN PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS SEQRES 19 E 400 GLU VAL VAL GLN LEU GLY GLY ARG GLY TYR GLY SER GLU SEQRES 20 E 400 SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU SEQRES 21 E 400 ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP SEQRES 22 E 400 ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY SEQRES 23 E 400 PRO LEU ALA PRO LYS GLY ARG LYS SER ARG LYS LYS LYS SEQRES 24 E 400 SER LYS ALA THR GLN LEU SER PRO GLU ASP ARG VAL GLU SEQRES 25 E 400 ASP ALA LEU PRO PRO SER LYS ALA PRO SER ARG THR ARG SEQRES 26 E 400 ARG ALA LYS ARG ASP LEU PRO LYS ARG THR ALA THR GLN SEQRES 27 E 400 ARG PRO GLU GLY THR SER LEU GLN GLN ASP PRO GLU ALA SEQRES 28 E 400 PRO THR VAL PRO LYS LYS GLY ARG ARG LYS GLY ARG GLN SEQRES 29 E 400 ALA ALA SER GLY HIS CYS ARG PRO ARG LYS VAL LYS ALA SEQRES 30 E 400 ASP ILE PRO SER LEU GLU PRO GLU GLY THR SER ALA SER SEQRES 31 E 400 ALA ALA LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 F 26 DC DG DT DC DC DA CTG DG DT DC DT DA DC SEQRES 2 F 26 DT DA DG DA DC DC DT DG DG DA DC DG DG HET CTG D 297 22 HET CTG C 297 22 HET CTG F 297 22 HETNAM CTG (5R,6S)-5,6-DIHYDRO-5,6-DIHYDROXYTHYMIDINE-5'- HETNAM 2 CTG MONOPHOSPHATE FORMUL 2 CTG 3(C10 H17 N2 O10 P) FORMUL 7 HOH *183(H2 O) HELIX 1 AA1 GLU A 3 CYS A 18 1 16 HELIX 2 AA2 GLU A 140 ASN A 151 1 12 HELIX 3 AA3 ASP A 154 ARG A 159 5 6 HELIX 4 AA4 PRO A 160 LEU A 165 1 6 HELIX 5 AA5 GLY A 175 LYS A 187 1 13 HELIX 6 AA6 LYS A 193 GLU A 199 1 7 HELIX 7 AA7 ASP A 224 GLY A 240 1 17 HELIX 8 AA8 PHE A 253 LEU A 260 1 8 HELIX 9 AA9 GLU B 3 ARG B 19 1 17 HELIX 10 AB1 GLU B 140 ARG B 150 1 11 HELIX 11 AB2 ASP B 154 ARG B 159 5 6 HELIX 12 AB3 PRO B 160 LEU B 165 1 6 HELIX 13 AB4 GLY B 175 TYR B 184 1 10 HELIX 14 AB5 LYS B 193 GLU B 199 1 7 HELIX 15 AB6 ASP B 224 LEU B 239 1 16 HELIX 16 AB7 ASP B 252 LEU B 260 1 9 HELIX 17 AB8 GLU E 3 ARG E 19 1 17 HELIX 18 AB9 GLU E 140 ASN E 151 1 12 HELIX 19 AC1 LYS E 155 ARG E 159 5 5 HELIX 20 AC2 PRO E 160 LEU E 165 1 6 HELIX 21 AC3 GLY E 175 ARG E 185 1 11 HELIX 22 AC4 LYS E 193 GLU E 199 1 7 HELIX 23 AC5 ASP E 224 GLN E 238 1 15 HELIX 24 AC6 PHE E 253 LEU E 260 1 8 SHEET 1 AA1 8 GLY A 83 PRO A 89 0 SHEET 2 AA1 8 LEU A 110 ASP A 116 -1 O ALA A 111 N VAL A 88 SHEET 3 AA1 8 ALA A 97 THR A 103 -1 N LEU A 99 O PHE A 114 SHEET 4 AA1 8 PHE A 23 LYS A 29 -1 N GLU A 28 O ARG A 100 SHEET 5 AA1 8 VAL A 38 ARG A 52 -1 O TYR A 45 N PHE A 23 SHEET 6 AA1 8 GLU A 55 PRO A 62 -1 O ARG A 57 N SER A 50 SHEET 7 AA1 8 LEU A 73 ARG A 78 -1 O LEU A 73 N LEU A 60 SHEET 8 AA1 8 ARG A 122 LEU A 125 -1 O ARG A 122 N ARG A 78 SHEET 1 AA2 2 SER A 269 GLN A 272 0 SHEET 2 AA2 2 THR A 278 PHE A 281 -1 O ILE A 279 N LEU A 271 SHEET 1 AA3 5 PHE B 23 CYS B 26 0 SHEET 2 AA3 5 GLU B 41 ARG B 52 -1 O TYR B 45 N PHE B 23 SHEET 3 AA3 5 GLU B 55 PRO B 62 -1 O ARG B 57 N SER B 50 SHEET 4 AA3 5 LEU B 73 ARG B 78 -1 O LEU B 73 N LEU B 60 SHEET 5 AA3 5 ARG B 122 LEU B 125 -1 O ARG B 122 N ARG B 78 SHEET 1 AA4 4 GLU B 28 LYS B 29 0 SHEET 2 AA4 4 ALA B 97 TYR B 102 -1 O ARG B 100 N GLU B 28 SHEET 3 AA4 4 LEU B 110 ASP B 116 -1 O PHE B 114 N LEU B 99 SHEET 4 AA4 4 GLY B 83 PRO B 89 -1 N VAL B 88 O ALA B 111 SHEET 1 AA5 2 SER B 269 GLN B 272 0 SHEET 2 AA5 2 THR B 278 PHE B 281 -1 O PHE B 281 N SER B 269 SHEET 1 AA6 4 PHE E 23 LYS E 29 0 SHEET 2 AA6 4 ALA E 97 THR E 103 -1 O TYR E 102 N GLY E 24 SHEET 3 AA6 4 LEU E 110 VAL E 115 -1 O PHE E 114 N LEU E 99 SHEET 4 AA6 4 PHE E 85 PRO E 89 -1 N GLN E 86 O CYS E 113 SHEET 1 AA7 4 SER E 48 ALA E 49 0 SHEET 2 AA7 4 GLU E 55 ILE E 59 -1 O ILE E 59 N SER E 48 SHEET 3 AA7 4 ALA E 74 ARG E 78 -1 O LEU E 75 N LEU E 58 SHEET 4 AA7 4 TRP E 123 LEU E 125 -1 O ASP E 124 N VAL E 76 SHEET 1 AA8 2 SER E 269 GLN E 272 0 SHEET 2 AA8 2 THR E 278 PHE E 281 -1 O ILE E 279 N LEU E 271 LINK O3' DA D 296 P CTG D 297 1555 1555 1.61 LINK O3' CTG D 297 P DG D 298 1555 1555 1.57 LINK O3' DA C 296 P CTG C 297 1555 1555 1.57 LINK O3' CTG C 297 P DG C 298 1555 1555 1.54 LINK OE1 GLU E 3 CA GLY E 175 1555 1555 1.28 LINK O3' DA F 296 P CTG F 297 1555 1555 1.62 LINK O3' CTG F 297 P DG F 298 1555 1555 1.60 CISPEP 1 GLN B 67 PRO B 68 0 -8.04 CISPEP 2 LEU B 125 GLY B 126 0 -20.03 CRYST1 73.991 109.378 170.968 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005849 0.00000